AT1G33670

BEST Arabidopsis thaliana protein match is Leucine-rich repeat (LRR) family protein (TAIR

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
12201963 .. 12203408
1446 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G33670.1

Sequence Viewer

Length: 1368 bp
ATGAACTCTTGTTCCTTCCCTCTCTTCCTCTTTGTTATCTTTCTCCGGTGTTTAAGTTCCACGGGAGCTGCCACATGTCATCCTGATGACAAAGCGGGTCTTTTAGCTTTCAAATCGGGTATAACCCAAGATCCTTCGGGTATTCTCAGCTCATGGCAGAAAGATATTGACTGCTGCTCCTGGTACGGTATCTTTTGCCTCCCTACGATTCATGGCGACCGCGTCACCATGATGGCATTAGACGGAAATACGGATGTTGGTGAAACCTTTCTCTCCGGCACTATCTCACCGTTGCTCGCCAAACTCCATCACCTCAACGAGATTCGCCTCACCAATCTTCGAAAGATCACTGGATCTTTTCCCCACTTCCTCTTCAAATTACCAAAGCTAAGGACTGTTTACTTAGAGAATAACCGTCTCTCTGGTCCCCTTCCTGCCAACATCGGTGCACTAAGTAATTTGGAAATTTTGAGTGTGGCGGGAAACCGGTTCAGCGGTTCGATCCCAAGTTCGATGTCTAAGTTAACTAGCTTACTCCAACTCAAGCTCAACGGTAACCGCCTTTCTGGCATCTTCCCAGACATATTCAAATCCATGCGGCAACTTCGATTTCTTGATCTCTCCAGCAACAGATTCTCTGGAAACCTTCCTTCATCGATTGCATCTCTTGCACCGACTCTTTCTACCCTTGAGGTGGGCCATAACAAGCTATCGGGGACTATCCCGGACTATTTATCGAGATTCGAGCTTCTCTCCGCATTAAATCTCTCTAGGAATGGGTACACAGGGGTCGTGCCGATGAGTTTTGCCAATCTGACCAACATTATCTTTCTTGATCTCTCCCACAATCTGCTTACCGGTCCATTCCCTGTCTTGAACTCATTAGGCATCGAATATCTACATCTTTCGTACAACCGATTTCACCTTGAAACAATCCCCGAATGGGTGACCTTGTCGAAGTTCATCTACTCATTGAAGCTTGCAAAATGTGGGATCAAAATGAGCTTAGACCATTGGATGCCAGCAGACACCTCTTTCTACCATCACATTGATTTTTCGGAAAACGAGATCTCAGGGAGTCCAATAAGGTTTTTTAACCAGATGGATTTTATGGTGGAGTTCCATGCACCGGGGAACAAACTCCAGTTCGACTTGGGGAAGCTAAAGTTTGGAATCTTCTTGAAAACCCTGGATTTGTCAAGGAACTTGGTATTTGGGAAGGTACCGGTGACGGTGACCAGACTGCAGACACTAAACTTGAGTCAAAACCATCTTTGCGGAAAGCTTCCATCGACAAAGTTCCCGGCTAGTGCTTTTGTCGATAACAAGTGTCTTTGCGGCTTTCCACTTTCTCCTTGTAAAGCTTAG

Protein Analysis

455

Amino Acids

50.43

Weight (kDa)

9.05

Isoelectric Point (pI)

35.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 27 - 66 3.8e-14 Leucine rich repeat N-terminal domain
LRR_14 PF23598 97 - 208 1e-08 Leucine-rich repeat region
LRR_8 PF13855 152 - 212 3.9e-10 Leucine rich repeat
LRR_8 PF13855 225 - 285 2.6e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1222
AccB1I GGYRCC 1 cut(s) 1222
AccII CGCG 1 cut(s) 222
AciI CCGC 9 cut(s) 95, 220, 479, 495, 559, 598, 756, 1278, 1338
AclWI GGATC 4 cut(s) 125, 361, 496, 1001
AcsI RAATTY 1 cut(s) 465
AfaI GTAC 4 cut(s) 185, 782, 911, 1224
AfiI CCNNNNNNNGG 3 cut(s) 694, 943, 1129
AflIII ACRYGT 1 cut(s) 74
AgeI ACCGGT 3 cut(s) 486, 857, 1225
AgsI TTSAA 7 cut(s) 112, 376, 589, 877, 929, 976, 1183
AjnI CCWGG 2 cut(s) 179, 1188
AloI GAACNNNNNNTCC 1 cut(s) 28
Alw21I GWGCWC 1 cut(s) 451
Alw26I GTCTC 1 cut(s) 422
Alw44I GTGCAC 1 cut(s) 447
AlwI GGATC 4 cut(s) 125, 361, 496, 1001
AoxI GGCC 1 cut(s) 697
ApaLI GTGCAC 1 cut(s) 447
ApeKI GCWGC 2 cut(s) 68, 174
ApoI RAATTY 1 cut(s) 465
AsiGI ACCGGT 3 cut(s) 486, 857, 1225
Asp700I GAANNNNTTC 1 cut(s) 267
Asp718I GGTACC 1 cut(s) 1222
AspS9I GGNCC 3 cut(s) 425, 697, 860
AsuC2I CCSGG 3 cut(s) 725, 1131, 1304
AsuHPI GGTGA 9 cut(s) 217, 272, 279, 302, 322, 914, 958, 1240, 1246
AsuII TTCGAA 1 cut(s) 340
AvaII GGWCC 2 cut(s) 425, 860
BaeGI GKGCMC 1 cut(s) 451
BanI GGYRCC 1 cut(s) 1222
BarI GAAGNNNNNNTAC 2 cut(s) 950, 982
Bbv12I GWGCWC 1 cut(s) 451
BbvI GCAGC 2 cut(s) 55, 161
BccI CCATC 6 cut(s) 226, 315, 1050, 1096, 1278, 1297
BciT130I CCWGG 2 cut(s) 181, 1190
BcnI CCSGG 3 cut(s) 725, 1131, 1304
BcoDI GTCTC 1 cut(s) 422
BfaI CTAG 3 cut(s) 528, 771, 1308
BfmI CTRYAG 1 cut(s) 1244
BglI GCCNNNNNGGC 1 cut(s) 567
BglII AGATCT 1 cut(s) 1068
BisI GCNGC 4 cut(s) 69, 175, 599, 1339
BlsI GCNGC 4 cut(s) 70, 176, 600, 1340
Bme1390I CCNGG 5 cut(s) 181, 725, 1131, 1190, 1304
Bme18I GGWCC 2 cut(s) 425, 860
BmgT120I GGNCC 3 cut(s) 425, 697, 860
BmiI GGNNCC 2 cut(s) 427, 1224
BmrFI CCNGG 5 cut(s) 181, 725, 1131, 1190, 1304
BmsI GCATC 4 cut(s) 579, 671, 897, 1008
BplI GAGNNNNNCTC 2 cut(s) 737, 769
BpmI CTGGAG 2 cut(s) 607, 1127
Bpu10I CCTNAGC 1 cut(s) 389
Bpu14I TTCGAA 1 cut(s) 340
BpuEI CTTGAG 3 cut(s) 527, 710, 1279
BpuMI CCSGG 3 cut(s) 725, 1131, 1304
Bsa29I ATCGAT 1 cut(s) 656
BsaJI CCNNGG 3 cut(s) 60, 1130, 1188
BsaWI WCCGGW 4 cut(s) 45, 486, 857, 1225
BsaXI ACNNNNNCTCC 2 cut(s) 161, 191
Bsc4I CCNNNNNNNGG 3 cut(s) 694, 943, 1129
Bse118I RCCGGY 3 cut(s) 486, 857, 1225
Bse1I ACTGG 2 cut(s) 355, 1144
BseBI CCWGG 2 cut(s) 181, 1190
BseCI ATCGAT 1 cut(s) 656
BseDI CCNNGG 3 cut(s) 60, 1130, 1188
BseGI GGATG 3 cut(s) 79, 259, 1023
BseLI CCNNNNNNNGG 3 cut(s) 694, 943, 1129
BseMII CTCAG 2 cut(s) 160, 1086
BseNI ACTGG 2 cut(s) 355, 1144
BseSI GKGCMC 1 cut(s) 451
BseXI GCAGC 2 cut(s) 55, 161
Bsh1236I CGCG 1 cut(s) 222
Bsh1285I CGRYCG 1 cut(s) 220
BshFI GGCC 1 cut(s) 699
BshNI GGYRCC 1 cut(s) 1222
BshTI ACCGGT 3 cut(s) 486, 857, 1225
BshVI ATCGAT 1 cut(s) 656
BsiEI CGRYCG 1 cut(s) 220
BsiHKAI GWGCWC 1 cut(s) 451
BsiSI CCGG 8 cut(s) 46, 276, 487, 725, 858, 1130, 1226, 1304
BslFI GGGAC 2 cut(s) 411, 730
BslI CCNNNNNNNGG 3 cut(s) 694, 943, 1129
BsmAI GTCTC 1 cut(s) 422
BsmBI CGTCTC 1 cut(s) 422
BsmFI GGGAC 2 cut(s) 411, 730
BsnI GGCC 1 cut(s) 699
Bsp119I TTCGAA 1 cut(s) 340
Bsp1286I GDGCHC 1 cut(s) 451
Bsp143I GATC 8 cut(s) 130, 345, 353, 501, 616, 835, 993, 1068
BspACI CCGC 9 cut(s) 95, 220, 479, 495, 559, 598, 756, 1278, 1338
BspANI GGCC 1 cut(s) 699
BspCNI CTCAG 2 cut(s) 159, 1085
BspDI ATCGAT 1 cut(s) 656
BspFNI CGCG 1 cut(s) 222
BspLI GGNNCC 2 cut(s) 427, 1224
BspMAI CTGCAG 1 cut(s) 1248
BspPI GGATC 4 cut(s) 125, 361, 496, 1001
BspT104I TTCGAA 1 cut(s) 340
BspT107I GGYRCC 1 cut(s) 1222
BsrFI RCCGGY 3 cut(s) 486, 857, 1225
BsrI ACTGG 2 cut(s) 355, 1144
BssAI RCCGGY 3 cut(s) 486, 857, 1225
BssECI CCNNGG 3 cut(s) 60, 1130, 1188
BssMI GATC 8 cut(s) 130, 345, 353, 501, 616, 835, 993, 1068
Bst2UI CCWGG 2 cut(s) 181, 1190
Bst4CI ACNGT 6 cut(s) 188, 291, 397, 416, 554, 1234
Bst6I CTCTTC 2 cut(s) 29, 377
BstAPI GCANNNNNTGC 1 cut(s) 668
BstBI TTCGAA 1 cut(s) 340
BstC8I GCNNGC 3 cut(s) 297, 981, 1023
BstDEI CTNAG 8 cut(s) 146, 389, 403, 452, 519, 1006, 1072, 1365
BstDSI CCRYGG 1 cut(s) 60
BstEII GGTNACC 3 cut(s) 554, 946, 1234
BstF5I GGATG 3 cut(s) 79, 259, 1023
BstFNI CGCG 1 cut(s) 222
BstKTI GATC 8 cut(s) 133, 348, 356, 504, 619, 838, 996, 1071
BstMAI GTCTC 1 cut(s) 422
BstMBI GATC 8 cut(s) 130, 345, 353, 501, 616, 835, 993, 1068
BstMCI CGRYCG 1 cut(s) 220
BstMWI GCNNNNNNNGC 2 cut(s) 567, 668
BstNI CCWGG 2 cut(s) 181, 1190
BstNSI RCATGY 1 cut(s) 78
BstPI GGTNACC 3 cut(s) 554, 946, 1234
BstSCI CCNGG 5 cut(s) 179, 723, 1129, 1188, 1302
BstSFI CTRYAG 1 cut(s) 1244
BstSLI GKGCMC 1 cut(s) 451
BstUI CGCG 1 cut(s) 222
BstV1I GCAGC 2 cut(s) 55, 161
BstX2I RGATCY 3 cut(s) 130, 353, 1068
BstYI RGATCY 3 cut(s) 130, 353, 1068
Bsu15I ATCGAT 1 cut(s) 656
BsuRI GGCC 1 cut(s) 699
BsuTUI ATCGAT 1 cut(s) 656
BtgI CCRYGG 1 cut(s) 60
BtsCI GGATG 3 cut(s) 79, 259, 1023
BtsIMutI CAGTG 1 cut(s) 348
Cac8I GCNNGC 3 cut(s) 297, 981, 1023
Cfr10I RCCGGY 3 cut(s) 486, 857, 1225
Cfr13I GGNCC 3 cut(s) 425, 697, 860
ClaI ATCGAT 1 cut(s) 656
CseI GACGC 1 cut(s) 211
Csp6I GTAC 4 cut(s) 184, 781, 910, 1223
CspAI ACCGGT 3 cut(s) 486, 857, 1225
CviAII CATG 6 cut(s) 75, 153, 212, 229, 595, 1124
CviQI GTAC 4 cut(s) 184, 781, 910, 1223
DdeI CTNAG 8 cut(s) 146, 389, 403, 452, 519, 1006, 1072, 1365
DpnI GATC 8 cut(s) 132, 347, 355, 503, 618, 837, 995, 1070
DpnII GATC 8 cut(s) 130, 345, 353, 501, 616, 835, 993, 1068
Eam1104I CTCTTC 2 cut(s) 29, 377
EarI CTCTTC 2 cut(s) 29, 377
Eco47I GGWCC 2 cut(s) 425, 860
Eco91I GGTNACC 3 cut(s) 554, 946, 1234
EcoO65I GGTNACC 3 cut(s) 554, 946, 1234
EcoRII CCWGG 2 cut(s) 179, 1188
Esp3I CGTCTC 1 cut(s) 422
FaeI CATG 6 cut(s) 78, 156, 215, 232, 598, 1127
FalI AAGNNNNNCTT 2 cut(s) 84, 116
FaqI GGGAC 2 cut(s) 411, 730
FatI CATG 6 cut(s) 74, 152, 211, 228, 594, 1123
FauI CCCGC 2 cut(s) 88, 472
Fnu4HI GCNGC 4 cut(s) 69, 175, 599, 1339
FokI GGATG 3 cut(s) 66, 266, 1030
Fsp4HI GCNGC 4 cut(s) 69, 175, 599, 1339
FspBI CTAG 3 cut(s) 528, 771, 1308
GluI GCNGC 4 cut(s) 69, 175, 599, 1339
GsuI CTGGAG 2 cut(s) 607, 1127
HaeIII GGCC 1 cut(s) 699
HapII CCGG 8 cut(s) 46, 276, 487, 725, 858, 1130, 1226, 1304
HgaI GACGC 1 cut(s) 211
Hin1II CATG 6 cut(s) 78, 156, 215, 232, 598, 1127
HincII GTYRAC 1 cut(s) 525
HindII GTYRAC 1 cut(s) 525
HindIII AAGCTT 3 cut(s) 977, 1283, 1362
HinfI GANTC 8 cut(s) 208, 322, 633, 676, 741, 1078, 1173, 1261
HpaI GTTAAC 1 cut(s) 525
HpaII CCGG 8 cut(s) 46, 276, 487, 725, 858, 1130, 1226, 1304
HphI GGTGA 9 cut(s) 217, 272, 279, 302, 322, 914, 958, 1240, 1246
Hpy166II GTNNAC 4 cut(s) 400, 449, 525, 783
Hpy188I TCNGA 2 cut(s) 816, 1060
Hpy188III TCNNGA 7 cut(s) 83, 614, 639, 738, 833, 874, 1180
Hpy8I GTNNAC 4 cut(s) 400, 449, 525, 783
HpyAV CCTTC 6 cut(s) 25, 144, 440, 656, 660, 1213
HpyCH4III ACNGT 6 cut(s) 188, 291, 397, 416, 554, 1234
HpyCH4V TGCA 6 cut(s) 449, 662, 671, 983, 1127, 1246
HpyF10VI GCNNNNNNNGC 2 cut(s) 567, 668
HpyF3I CTNAG 8 cut(s) 146, 389, 403, 452, 519, 1006, 1072, 1365
Hsp92II CATG 6 cut(s) 78, 156, 215, 232, 598, 1127
KpnI GGTACC 1 cut(s) 1226
KspAI GTTAAC 1 cut(s) 525
Kzo9I GATC 8 cut(s) 130, 345, 353, 501, 616, 835, 993, 1068
LmnI GCTCC 2 cut(s) 65, 182
Lsp1109I GCAGC 2 cut(s) 55, 161
LweI GCATC 4 cut(s) 579, 671, 897, 1008
MaeI CTAG 3 cut(s) 528, 771, 1308
MaeIII GTNAC 5 cut(s) 223, 554, 946, 1228, 1234
MalI GATC 8 cut(s) 132, 347, 355, 503, 618, 837, 995, 1070
MboI GATC 8 cut(s) 130, 345, 353, 501, 616, 835, 993, 1068
MboII GAAGA 5 cut(s) 16, 329, 364, 565, 1168
MflI RGATCY 3 cut(s) 130, 353, 1068
MhlI GDGCHC 1 cut(s) 451
MluCI AATT 3 cut(s) 377, 457, 465
MlyI GAGTC 3 cut(s) 670, 1087, 1270
MmeI TCCRAC 1 cut(s) 562
MnlI CCTC 8 cut(s) 30, 38, 209, 323, 338, 380, 685, 1042
MroXI GAANNNNTTC 1 cut(s) 267
MseI TTAA 4 cut(s) 53, 524, 761, 1095
MslI CAYNNNNRTG 2 cut(s) 84, 230
MspA1I CMGCKG 1 cut(s) 495
MspI CCGG 8 cut(s) 46, 276, 487, 725, 858, 1130, 1226, 1304
MspR9I CCNGG 5 cut(s) 181, 725, 1131, 1190, 1304
MvaI CCWGG 2 cut(s) 181, 1190
MvnI CGCG 1 cut(s) 222
MwoI GCNNNNNNNGC 2 cut(s) 567, 668
NciI CCSGG 3 cut(s) 725, 1131, 1304
NdeII GATC 8 cut(s) 130, 345, 353, 501, 616, 835, 993, 1068
NlaIII CATG 6 cut(s) 78, 156, 215, 232, 598, 1127
NlaIV GGNNCC 2 cut(s) 427, 1224
NmuCI GTSAC 4 cut(s) 223, 946, 1228, 1234
NspI RCATGY 1 cut(s) 78
NspV TTCGAA 1 cut(s) 340
PciI ACATGT 1 cut(s) 74
PdmI GAANNNNTTC 1 cut(s) 267
PfeI GAWTC 5 cut(s) 208, 322, 633, 741, 1173
PflFI GACNNNGTC 2 cut(s) 221, 952
PfoI TCCNGGA 1 cut(s) 723
PinAI ACCGGT 3 cut(s) 486, 857, 1225
PkrI GCNGC 4 cut(s) 70, 176, 600, 1340
PleI GAGTC 3 cut(s) 670, 1086, 1269
PpsI GAGTC 3 cut(s) 670, 1086, 1269
PscI ACATGT 1 cut(s) 74
Psp6I CCWGG 2 cut(s) 179, 1188
PspEI GGTNACC 3 cut(s) 554, 946, 1234
PspGI CCWGG 2 cut(s) 179, 1188
PspN4I GGNNCC 2 cut(s) 427, 1224
PspPI GGNCC 3 cut(s) 425, 697, 860
PstI CTGCAG 1 cut(s) 1248
PsuI RGATCY 3 cut(s) 130, 353, 1068
PsyI GACNNNGTC 2 cut(s) 221, 952
RsaI GTAC 4 cut(s) 185, 782, 911, 1224
RsaNI GTAC 4 cut(s) 184, 781, 910, 1223
RseI CAYNNNNRTG 2 cut(s) 84, 230
SaqAI TTAA 4 cut(s) 53, 524, 761, 1095
SatI GCNGC 4 cut(s) 69, 175, 599, 1339
Sau3AI GATC 8 cut(s) 130, 345, 353, 501, 616, 835, 993, 1068
Sau96I GGNCC 3 cut(s) 425, 697, 860
SchI GAGTC 3 cut(s) 670, 1087, 1270
ScrFI CCNGG 5 cut(s) 181, 725, 1131, 1190, 1304
SduI GDGCHC 1 cut(s) 451
SfaNI GCATC 4 cut(s) 579, 671, 897, 1008
SfcI CTRYAG 1 cut(s) 1244
SfuI TTCGAA 1 cut(s) 340
SinI GGWCC 2 cut(s) 425, 860
SmiMI CAYNNNNRTG 2 cut(s) 84, 230
SmlI CTYRAG 3 cut(s) 542, 689, 1258
SmoI CTYRAG 3 cut(s) 542, 689, 1258
Sse9I AATT 3 cut(s) 377, 457, 465
SsiI CCGC 9 cut(s) 95, 220, 479, 495, 559, 598, 756, 1278, 1338
SspMI CTAG 3 cut(s) 528, 771, 1308
StyD4I CCNGG 5 cut(s) 179, 723, 1129, 1188, 1302
TaaI ACNGT 6 cut(s) 188, 291, 397, 416, 554, 1234
TasI AATT 3 cut(s) 377, 457, 465
TauI GCSGC 2 cut(s) 601, 1341
TfiI GAWTC 5 cut(s) 208, 322, 633, 741, 1173
Tru1I TTAA 4 cut(s) 53, 524, 761, 1095
Tru9I TTAA 4 cut(s) 53, 524, 761, 1095
TscAI CASTG 1 cut(s) 355
TseFI GTSAC 4 cut(s) 223, 946, 1228, 1234
TseI GCWGC 2 cut(s) 68, 174
Tsp45I GTSAC 4 cut(s) 223, 946, 1228, 1234
TspDTI ATGAA 4 cut(s) 17, 200, 642, 952
TspGWI ACGGA 2 cut(s) 258, 266
TspRI CASTG 1 cut(s) 355
Tth111I GACNNNGTC 2 cut(s) 221, 952
VneI GTGCAC 1 cut(s) 447
VpaK11BI GGWCC 2 cut(s) 425, 860
XapI RAATTY 1 cut(s) 465
XceI RCATGY 1 cut(s) 78
XmnI GAANNNNTTC 1 cut(s) 267
XspI CTAG 3 cut(s) 528, 771, 1308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.