Rh6BG002800

Leucine-rich repeat receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Reverse (-)
441424 .. 442710
1287 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG002800.1

Sequence Viewer

Length: 1287 bp
ATGCTCACCTCATGGAAAAAGGGCACAGACTGCTGCACGTGGTCCGGCGTTAACTGCAACAGCAACAACCGGGTCAGAATGCTGTCCCTCTCGGGCCAACCCGACAAGCCCAACTCATTTTTATCCGGTACAATCTCTCCCTCCCTCTCAAAGCTCAAATTCCTAGACGGCATCTATCTCCAGGACCTCAGAAACCTCACGGGTCCTTTCCCGGTTTTCCTCTTCCAGCTCCCCAATCTCAAATACGTCTACATCGAAAACAGCAAGCTCTCGGGTCGGATACCCGATTCCGTCGGTAACTTGACCCAGCTTGAGGCCCTCAGTTTCTACTACAACCGGTTCACCGGTCCAATCCCGAGTTCAATATCCAGGTTGACTCAGTTGGGTCAGCTCAAACTCGGCGGCAACCTTTTAACCGGGTCCATACCCATCGGCATCAAAAACCTCAACAAGCTCACCTATCTGACTCTCGAGCGAAACGGGTTGTCGGGTCCCATACCCGACTTCTTCGCCTCTTTTCCAGAGCTCCGAATTCTCAATCTTACCCGTAATAAATTTACCGGGAAAATCCCAGCTTCAATCTCCGCTTTGGCGCCAAAATTGCTCTACCTTGAGTTTGGTCACAATGCCTTGACCGGTCAAATTCCAGCATTTCTAGGAAACTTCAGGGCCCTTGATACCCTTGATCTTGGTTACAATAAATTAACAGGCACTGTGCCTCAGACACTTGCCAACTTGACCAAGATCTTCAATCTGGATCTTTCTCATAATCAACTTGTGGATCCATTCCCACAGCTGAATGTGAAAGGCATCGAGTCACTTGATCTATCTTACAACAAGTTCCATCTGAATGAGATTCCGAAATGGGTTACTTCTTCGCCGATCATTTACTCTCTGAAGCTTGCGAATTGCGGGATTAAGTTGAAGCTGGAGGACTGGAAGCCTGCGCAGACCTATTACTATGACTACATTGATTTGTCTGGGAATCAGATTACCGGTAGTCCGGTTGGATTGTTGAACAAGACTGATTTCTTGGTGGGTTTTTGGGCTTCCGGAAACAAGTTGAAGTTTAATCTGGAGAGTTTGAGGATTGGGCAGACATTGAAGCACTTAGACGTGTCTAGGAATTTGGTTTTCGGGAAGGTGCCTAAAACAGTGTCTGGGCTTGACACATTGAACGTGAGCTATAATCATCTGTGTGGACAACTTCCGGCCACCAAGTTTCCGGCTTCAGCATTTTTGGGGAACGATTGTCTCTGCGGTCCTCCACTGGCTGCATGTAAATAA

Protein Analysis

428

Amino Acids

47.19

Weight (kDa)

9.36

Isoelectric Point (pI)

27.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 45 - 157 8.5e-09 Leucine-rich repeat region
LRR_8 PF13855 202 - 259 9.9e-08 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 948
AccB1I GGYRCC 2 cut(s) 592, 1144
AccI GTMKAC 1 cut(s) 249
AccIII TCCGGA 1 cut(s) 1052
AciI CCGC 4 cut(s) 402, 585, 912, 1260
AclWI GGATC 3 cut(s) 765, 776, 789
AcoI YGGCCR 1 cut(s) 1212
AcsI RAATTY 5 cut(s) 158, 531, 554, 642, 1126
AcuI CTGAAG 3 cut(s) 649, 917, 1215
AcvI CACGTG 1 cut(s) 39
AcyI GRCGYC 1 cut(s) 593
AfaI GTAC 1 cut(s) 130
AfiI CCNNNNNNNGG 1 cut(s) 313
AflIII ACRYGT 1 cut(s) 1116
AgeI ACCGGT 4 cut(s) 336, 344, 635, 995
AgsI TTSAA 8 cut(s) 363, 579, 751, 925, 1018, 1066, 1105, 1177
AjiI CACGTC 1 cut(s) 1117
AjnI CCWGG 2 cut(s) 180, 368
AjuI GAANNNNNNNTTGG 2 cut(s) 343, 375
Alw21I GWGCWC 1 cut(s) 528
Alw26I GTCTC 1 cut(s) 1259
AlwI GGATC 3 cut(s) 765, 776, 789
AlwNI CAGNNNCTG 2 cut(s) 713, 1160
Ama87I CYCGRG 4 cut(s) 91, 271, 355, 470
Aor13HI TCCGGA 1 cut(s) 1052
AoxI GGCC 4 cut(s) 94, 315, 669, 1212
ApaI GGGCCC 1 cut(s) 673
ApeKI GCWGC 2 cut(s) 33, 1274
ApoI RAATTY 5 cut(s) 158, 531, 554, 642, 1126
AsiGI ACCGGT 4 cut(s) 336, 344, 635, 995
AspLEI GCGC 2 cut(s) 595, 949
AsuC2I CCSGG 4 cut(s) 71, 212, 418, 562
AsuHPI GGTGA 2 cut(s) 334, 448
AvaI CYCGRG 4 cut(s) 91, 271, 355, 470
AvaII GGWCC 7 cut(s) 42, 184, 203, 347, 420, 491, 1262
BaeGI GKGCMC 2 cut(s) 26, 673
BamHI GGATCC 1 cut(s) 781
BanI GGYRCC 2 cut(s) 592, 1144
BanII GRGCYC 2 cut(s) 528, 673
BbrPI CACGTG 1 cut(s) 39
Bbv12I GWGCWC 1 cut(s) 528
BbvI GCAGC 2 cut(s) 20, 1261
BccI CCATC 2 cut(s) 437, 852
BceAI ACGGC 1 cut(s) 184
BciT130I CCWGG 2 cut(s) 182, 370
BciVI GTATCC 1 cut(s) 273
BcnI CCSGG 4 cut(s) 71, 212, 418, 562
BcoDI GTCTC 1 cut(s) 1259
BfaI CTAG 3 cut(s) 164, 656, 1122
BfoI RGCGCY 1 cut(s) 596
BfuI GTATCC 1 cut(s) 273
BglII AGATCT 1 cut(s) 744
BisI GCNGC 3 cut(s) 34, 403, 1275
BlsI GCNGC 3 cut(s) 35, 404, 1276
Bme1390I CCNGG 6 cut(s) 71, 182, 212, 370, 418, 562
Bme18I GGWCC 7 cut(s) 42, 184, 203, 347, 420, 491, 1262
BmeT110I CYCGRG 4 cut(s) 91, 271, 355, 470
BmgBI CACGTC 1 cut(s) 1117
BmiI GGNNCC 8 cut(s) 204, 421, 492, 493, 594, 671, 783, 1146
BmrFI CCNGG 6 cut(s) 71, 182, 212, 370, 418, 562
BmsI GCATC 3 cut(s) 180, 444, 819
BpmI CTGGAG 3 cut(s) 164, 950, 1097
BpuEI CTTGAG 2 cut(s) 332, 632
BpuMI CCSGG 4 cut(s) 71, 212, 418, 562
BsaAI YACGTR 1 cut(s) 39
BsaHI GRCGYC 1 cut(s) 593
BsaWI WCCGGW 7 cut(s) 125, 336, 344, 635, 995, 1003, 1052
BsaXI ACNNNNNCTCC 2 cut(s) 121, 151
Bsc4I CCNNNNNNNGG 1 cut(s) 313
Bse118I RCCGGY 4 cut(s) 336, 344, 635, 995
Bse1I ACTGG 2 cut(s) 941, 1275
BseAI TCCGGA 1 cut(s) 1052
BseBI CCWGG 2 cut(s) 182, 370
BseLI CCNNNNNNNGG 1 cut(s) 313
BseMII CTCAG 4 cut(s) 202, 334, 392, 734
BseNI ACTGG 2 cut(s) 941, 1275
BseSI GKGCMC 2 cut(s) 26, 673
BseXI GCAGC 2 cut(s) 20, 1261
BseYI CCCAGC 2 cut(s) 306, 571
BsgI GTGCAG 1 cut(s) 19
BshFI GGCC 4 cut(s) 96, 317, 671, 1214
BshNI GGYRCC 2 cut(s) 592, 1144
BshTI ACCGGT 4 cut(s) 336, 344, 635, 995
BsiHKAI GWGCWC 1 cut(s) 528
BsiHKCI CYCGRG 4 cut(s) 91, 271, 355, 470
BslFI GGGAC 2 cut(s) 70, 477
BslI CCNNNNNNNGG 1 cut(s) 313
BsmAI GTCTC 1 cut(s) 1259
BsmFI GGGAC 2 cut(s) 70, 477
BsmI GAATGC 1 cut(s) 84
BsnI GGCC 4 cut(s) 96, 317, 671, 1214
BsoBI CYCGRG 4 cut(s) 91, 271, 355, 470
Bsp120I GGGCCC 1 cut(s) 669
Bsp1286I GDGCHC 3 cut(s) 26, 528, 673
Bsp13I TCCGGA 1 cut(s) 1052
Bsp143I GATC 6 cut(s) 685, 744, 757, 781, 823, 882
BspACI CCGC 4 cut(s) 402, 585, 912, 1260
BspANI GGCC 4 cut(s) 96, 317, 671, 1214
BspCNI CTCAG 4 cut(s) 201, 333, 391, 733
BspEI TCCGGA 1 cut(s) 1052
BspLI GGNNCC 8 cut(s) 204, 421, 492, 493, 594, 671, 783, 1146
BspPI GGATC 3 cut(s) 765, 776, 789
BspT107I GGYRCC 2 cut(s) 592, 1144
BsrFI RCCGGY 4 cut(s) 336, 344, 635, 995
BsrI ACTGG 2 cut(s) 941, 1275
BssAI RCCGGY 4 cut(s) 336, 344, 635, 995
BssMI GATC 6 cut(s) 685, 744, 757, 781, 823, 882
BssNI GRCGYC 1 cut(s) 593
Bst2UI CCWGG 2 cut(s) 182, 370
Bst4CI ACNGT 2 cut(s) 715, 1156
Bst6I CTCTTC 1 cut(s) 227
BstACI GRCGYC 1 cut(s) 593
BstAPI GCANNNNNTGC 1 cut(s) 30
BstBAI YACGTR 1 cut(s) 39
BstC8I GCNNGC 3 cut(s) 266, 903, 945
BstDEI CTNAG 5 cut(s) 188, 320, 378, 720, 1111
BstH2I RGCGCY 1 cut(s) 596
BstHHI GCGC 2 cut(s) 595, 949
BstKTI GATC 6 cut(s) 688, 747, 760, 784, 826, 885
BstMAI GTCTC 1 cut(s) 1259
BstMBI GATC 6 cut(s) 685, 744, 757, 781, 823, 882
BstMWI GCNNNNNNNGC 3 cut(s) 30, 54, 601
BstNI CCWGG 2 cut(s) 182, 370
BstNSI RCATGY 1 cut(s) 1281
BstSCI CCNGG 6 cut(s) 69, 180, 210, 368, 416, 560
BstSLI GKGCMC 2 cut(s) 26, 673
BstV1I GCAGC 2 cut(s) 20, 1261
BstX2I RGATCY 3 cut(s) 744, 757, 781
BstYI RGATCY 3 cut(s) 744, 757, 781
BsuI GTATCC 1 cut(s) 273
BsuRI GGCC 4 cut(s) 96, 317, 671, 1214
BtrI CACGTC 1 cut(s) 1117
BtsIMutI CAGTG 3 cut(s) 711, 1161, 1268
Cac8I GCNNGC 3 cut(s) 266, 903, 945
CaiI CAGNNNCTG 2 cut(s) 713, 1160
CfoI GCGC 2 cut(s) 595, 949
Cfr10I RCCGGY 4 cut(s) 336, 344, 635, 995
Csp6I GTAC 1 cut(s) 129
CspAI ACCGGT 4 cut(s) 336, 344, 635, 995
CviAII CATG 2 cut(s) 12, 1278
CviQI GTAC 1 cut(s) 129
DdeI CTNAG 5 cut(s) 188, 320, 378, 720, 1111
DinI GGCGCC 1 cut(s) 594
DpnI GATC 6 cut(s) 687, 746, 759, 783, 825, 884
DpnII GATC 6 cut(s) 685, 744, 757, 781, 823, 882
EaeI YGGCCR 1 cut(s) 1212
Eam1104I CTCTTC 1 cut(s) 227
EarI CTCTTC 1 cut(s) 227
Ecl136II GAGCTC 1 cut(s) 526
Eco24I GRGCYC 2 cut(s) 528, 673
Eco47I GGWCC 7 cut(s) 42, 184, 203, 347, 420, 491, 1262
Eco53kI GAGCTC 1 cut(s) 526
Eco57I CTGAAG 3 cut(s) 649, 917, 1215
Eco72I CACGTG 1 cut(s) 39
Eco88I CYCGRG 4 cut(s) 91, 271, 355, 470
EcoICRI GAGCTC 1 cut(s) 526
EcoO109I RGGNCCY 6 cut(s) 184, 203, 316, 491, 669, 670
EcoRI GAATTC 1 cut(s) 531
EcoRII CCWGG 2 cut(s) 180, 368
EcoT38I GRGCYC 2 cut(s) 528, 673
EgeI GGCGCC 1 cut(s) 594
EheI GGCGCC 1 cut(s) 594
FaeI CATG 2 cut(s) 15, 1281
FaiI YATR 7 cut(s) 13, 425, 497, 768, 963, 1188, 1279
FaqI GGGAC 2 cut(s) 70, 477
FatI CATG 2 cut(s) 11, 1277
FauI CCCGC 1 cut(s) 905
FblI GTMKAC 1 cut(s) 249
Fnu4HI GCNGC 3 cut(s) 34, 403, 1275
FriOI GRGCYC 2 cut(s) 528, 673
Fsp4HI GCNGC 3 cut(s) 34, 403, 1275
FspBI CTAG 3 cut(s) 164, 656, 1122
FspI TGCGCA 1 cut(s) 948
GlaI GCGC 2 cut(s) 594, 948
GluI GCNGC 3 cut(s) 34, 403, 1275
GsaI CCCAGC 2 cut(s) 310, 575
GsuI CTGGAG 3 cut(s) 164, 950, 1097
HaeII RGCGCY 1 cut(s) 596
HaeIII GGCC 4 cut(s) 96, 317, 671, 1214
HhaI GCGC 2 cut(s) 595, 949
Hin1I GRCGYC 1 cut(s) 593
Hin1II CATG 2 cut(s) 15, 1281
Hin6I GCGC 2 cut(s) 593, 947
HinP1I GCGC 2 cut(s) 593, 947
HincII GTYRAC 2 cut(s) 52, 375
HindII GTYRAC 2 cut(s) 52, 375
HindIII AAGCTT 1 cut(s) 899
HinfI GANTC 6 cut(s) 287, 376, 466, 815, 856, 985
HpaI GTTAAC 1 cut(s) 52
HphI GGTGA 2 cut(s) 334, 448
Hpy166II GTNNAC 5 cut(s) 52, 250, 342, 375, 1202
Hpy188III TCNNGA 7 cut(s) 355, 470, 521, 755, 1053, 1076, 1138
Hpy8I GTNNAC 5 cut(s) 52, 250, 342, 375, 1202
Hpy99I CGWCG 1 cut(s) 296
HpyAV CCTTC 1 cut(s) 1135
HpyCH4III ACNGT 2 cut(s) 715, 1156
HpyCH4IV ACGT 4 cut(s) 38, 246, 1116, 1179
HpyCH4V TGCA 3 cut(s) 36, 57, 1277
HpyF10VI GCNNNNNNNGC 3 cut(s) 30, 54, 601
HpyF3I CTNAG 5 cut(s) 188, 320, 378, 720, 1111
HpySE526I ACGT 4 cut(s) 38, 246, 1116, 1179
Hsp92I GRCGYC 1 cut(s) 593
Hsp92II CATG 2 cut(s) 15, 1281
HspAI GCGC 2 cut(s) 593, 947
KasI GGCGCC 1 cut(s) 592
KflI GGGWCCC 1 cut(s) 491
Kpn2I TCCGGA 1 cut(s) 1052
KspAI GTTAAC 1 cut(s) 52
Kzo9I GATC 6 cut(s) 685, 744, 757, 781, 823, 882
LmnI GCTCC 2 cut(s) 234, 531
Lsp1109I GCAGC 2 cut(s) 20, 1261
LweI GCATC 3 cut(s) 180, 444, 819
MaeI CTAG 3 cut(s) 164, 656, 1122
MaeII ACGT 4 cut(s) 38, 246, 1116, 1179
MaeIII GTNAC 5 cut(s) 296, 620, 692, 816, 868
MalI GATC 6 cut(s) 687, 746, 759, 783, 825, 884
MboI GATC 6 cut(s) 685, 744, 757, 781, 823, 882
MboII GAAGA 4 cut(s) 214, 499, 739, 867
MflI RGATCY 3 cut(s) 744, 757, 781
MhlI GDGCHC 3 cut(s) 26, 528, 673
MluCI AATT 8 cut(s) 158, 531, 554, 599, 642, 701, 907, 1126
Mly113I GGCGCC 1 cut(s) 593
MlyI GAGTC 3 cut(s) 370, 460, 824
MmeI TCCRAC 2 cut(s) 257, 988
MroI TCCGGA 1 cut(s) 1052
MseI TTAA 5 cut(s) 51, 413, 704, 918, 1071
MslI CAYNNNNRTG 2 cut(s) 849, 1197
MspA1I CMGCKG 1 cut(s) 796
MspR9I CCNGG 6 cut(s) 71, 182, 212, 370, 418, 562
Mva1269I GAATGC 1 cut(s) 84
MvaI CCWGG 2 cut(s) 182, 370
MwoI GCNNNNNNNGC 3 cut(s) 30, 54, 601
NarI GGCGCC 1 cut(s) 593
NciI CCSGG 4 cut(s) 71, 212, 418, 562
NdeII GATC 6 cut(s) 685, 744, 757, 781, 823, 882
NlaIII CATG 2 cut(s) 15, 1281
NlaIV GGNNCC 8 cut(s) 204, 421, 492, 493, 594, 671, 783, 1146
NmeAIII GCCGAG 1 cut(s) 378
NmuCI GTSAC 2 cut(s) 620, 816
NsbI TGCGCA 1 cut(s) 948
NspI RCATGY 1 cut(s) 1281
PaeR7I CTCGAG 1 cut(s) 470
PcsI WCGNNNNNNNCGW 1 cut(s) 252
PctI GAATGC 1 cut(s) 84
PfeI GAWTC 3 cut(s) 287, 856, 985
PfoI TCCNGGA 1 cut(s) 180
PinAI ACCGGT 4 cut(s) 336, 344, 635, 995
PkrI GCNGC 3 cut(s) 35, 404, 1276
PleI GAGTC 3 cut(s) 370, 460, 823
PluTI GGCGCC 1 cut(s) 596
PmaCI CACGTG 1 cut(s) 39
PmlI CACGTG 1 cut(s) 39
PpsI GAGTC 3 cut(s) 370, 460, 823
Ppu21I YACGTR 1 cut(s) 39
PpuMI RGGWCCY 3 cut(s) 184, 203, 491
Psp124BI GAGCTC 1 cut(s) 528
Psp5II RGGWCCY 3 cut(s) 184, 203, 491
Psp6I CCWGG 2 cut(s) 180, 368
PspCI CACGTG 1 cut(s) 39
PspFI CCCAGC 2 cut(s) 306, 571
PspGI CCWGG 2 cut(s) 180, 368
PspN4I GGNNCC 8 cut(s) 204, 421, 492, 493, 594, 671, 783, 1146
PspOMI GGGCCC 1 cut(s) 669
PspPPI RGGWCCY 3 cut(s) 184, 203, 491
PstNI CAGNNNCTG 2 cut(s) 713, 1160
PsuI RGATCY 3 cut(s) 744, 757, 781
PvuII CAGCTG 1 cut(s) 796
RsaI GTAC 1 cut(s) 130
RsaNI GTAC 1 cut(s) 129
RseI CAYNNNNRTG 2 cut(s) 849, 1197
SacI GAGCTC 1 cut(s) 528
SaqAI TTAA 5 cut(s) 51, 413, 704, 918, 1071
SatI GCNGC 3 cut(s) 34, 403, 1275
Sau3AI GATC 6 cut(s) 685, 744, 757, 781, 823, 882
SchI GAGTC 3 cut(s) 370, 460, 824
ScrFI CCNGG 6 cut(s) 71, 182, 212, 370, 418, 562
SduI GDGCHC 3 cut(s) 26, 528, 673
SfaNI GCATC 3 cut(s) 180, 444, 819
SfoI GGCGCC 1 cut(s) 594
Sfr274I CTCGAG 1 cut(s) 470
SinI GGWCC 7 cut(s) 42, 184, 203, 347, 420, 491, 1262
SlaI CTCGAG 1 cut(s) 470
SmiMI CAYNNNNRTG 2 cut(s) 849, 1197
SmlI CTYRAG 3 cut(s) 311, 470, 611
SmoI CTYRAG 3 cut(s) 311, 470, 611
Sse9I AATT 8 cut(s) 158, 531, 554, 599, 642, 701, 907, 1126
SsiI CCGC 4 cut(s) 402, 585, 912, 1260
SspDI GGCGCC 1 cut(s) 592
SspMI CTAG 3 cut(s) 164, 656, 1122
SstI GAGCTC 1 cut(s) 528
StyD4I CCNGG 6 cut(s) 69, 180, 210, 368, 416, 560
TaaI ACNGT 2 cut(s) 715, 1156
TaiI ACGT 4 cut(s) 41, 249, 1119, 1182
TaqI TCGA 3 cut(s) 255, 471, 813
TasI AATT 8 cut(s) 158, 531, 554, 599, 642, 701, 907, 1126
TauI GCSGC 1 cut(s) 405
TfiI GAWTC 3 cut(s) 287, 856, 985
Tru1I TTAA 5 cut(s) 51, 413, 704, 918, 1071
Tru9I TTAA 5 cut(s) 51, 413, 704, 918, 1071
TscAI CASTG 3 cut(s) 718, 1161, 1275
TseFI GTSAC 2 cut(s) 620, 816
TseI GCWGC 2 cut(s) 33, 1274
Tsp45I GTSAC 2 cut(s) 620, 816
TspGWI ACGGA 1 cut(s) 280
TspRI CASTG 3 cut(s) 718, 1161, 1275
VpaK11BI GGWCC 7 cut(s) 42, 184, 203, 347, 420, 491, 1262
XapI RAATTY 5 cut(s) 158, 531, 554, 642, 1126
XceI RCATGY 1 cut(s) 1281
XhoI CTCGAG 1 cut(s) 470
XmiI GTMKAC 1 cut(s) 249
XspI CTAG 3 cut(s) 164, 656, 1122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.