AT1G33800

glucuronoxylan 4-O-methyltransferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0009914
Physical Location & Seq
Forward (+)
12261165 .. 12262750
1586 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G33800.1

Sequence Viewer

Length: 894 bp
ATGAGGACCAAATCTCCATCTTCTCTTAATCTCAAGGTCATATTCATAGGTTCCTCAATCTTGATCTTGATCATCATCTACTTAGCAAGATCAAACATCTCTTCTTCCTCTTCAAAGCCAATCTCCAAAACAAATCTCTCCCAAGAAGAAGAAGAAACTCAGCATAAACAAGAAGGATGTCCAACAACACAACAATGCACAAAGATGCCACTTTCTTTATCCGATGCATTGGTTCATTACGTCACTAGTAACGTCACTCCACAACAAACATTTGATGAAGTCTCTGTCTCAAAGAGAGTCTTGGACAAGAAGTCTCCTTGTAACTTCCTTGTCTTTGGCTTAGGTCACGACAGTTTAATGTGGGCATCTCTTAACCATGGTGGTCGTACCTTGTTTATTGAAGAAGACCAAGCTTGGATTGCGATAGTAACTAAGAAGTTCCCAAACTTAGAATCTTACCACGTAGTTTACGACACAAAAGTCAAAGATTCAGACAAGCTGATGGAACTAGGAAGATCAGAAGAGTGTAGATCTGTGTCTGATCCGAGAAACTCCAAATGTGATCTTGCGTTGAAAGATTTCCCGGCGGACTTTTACGAGACGAAATGGGATCTGATCATGGTTGATGCACCAACTGGTTACCATGAAGAAGCTCCGGGGAGGATGAGTGCTATTTACACGGCGGGGCTTTTGGCTCGTAACCGTGAAGATGGTGAAACTGACGTTTTTGTTCACGACGTTAACCGTCCGGTGGAAGATGAGTTCTCGGCGACTTTCTTGTGTAAAGGTTATATGAGGGAGCAAAATGGGAGACTTAGACATTTTACTATTCCTAGTCATCGGGCTCGTGCTGGACGACCTTTTTGTCCGGTGGAAGTTGATCGCCGCCGTTAA

Protein Analysis

297

Amino Acids

33.67

Weight (kDa)

6.51

Isoelectric Point (pI)

60.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IRX15_IRX15L_GXM PF21729 93 - 275 1.7e-79 IRX15/IRX15L/GXM
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 479, 864
AciI CCGC 3 cut(s) 587, 683, 886
AclWI GGATC 2 cut(s) 536, 618
AfaI GTAC 1 cut(s) 388
AfiI CCNNNNNNNGG 1 cut(s) 751
AgsI TTSAA 3 cut(s) 114, 401, 574
AhdI GACNNNNNGTC 1 cut(s) 310
AhlI ACTAGT 1 cut(s) 245
AloI GAACNNNNNNTCC 2 cut(s) 746, 778
AluBI AGCT 3 cut(s) 413, 499, 653
AluI AGCT 3 cut(s) 413, 499, 653
Alw26I GTCTC 5 cut(s) 286, 292, 318, 593, 805
AlwI GGATC 2 cut(s) 536, 618
ArsI GACNNNNNNTTYG 2 cut(s) 846, 878
Asp700I GAANNNNTTC 1 cut(s) 578
AspS9I GGNCC 1 cut(s) 6
AsuC2I CCSGG 2 cut(s) 584, 657
AsuHPI GGTGA 1 cut(s) 725
AvaII GGWCC 1 cut(s) 6
BanII GRGCYC 1 cut(s) 847
BauI CACGAG 1 cut(s) 846
BbsI GAAGAC 1 cut(s) 411
BccI CCATC 3 cut(s) 25, 496, 704
BceAI ACGGC 2 cut(s) 696, 873
BclI TGATCA 2 cut(s) 69, 615
BcnI CCSGG 2 cut(s) 584, 657
BcoDI GTCTC 5 cut(s) 286, 292, 318, 593, 805
BcuI ACTAGT 1 cut(s) 245
BfaI CTAG 3 cut(s) 246, 509, 834
BglII AGATCT 1 cut(s) 530
BisI GCNGC 1 cut(s) 886
BlsI GCNGC 1 cut(s) 887
Bme1390I CCNGG 2 cut(s) 584, 657
Bme18I GGWCC 1 cut(s) 6
BmeRI GACNNNNNGTC 1 cut(s) 310
BmgT120I GGNCC 1 cut(s) 6
BmiI GGNNCC 1 cut(s) 52
BmrFI CCNGG 2 cut(s) 584, 657
BmsI GCATC 4 cut(s) 195, 214, 374, 616
BpiI GAAGAC 1 cut(s) 411
Bpu10I CCTNAGC 1 cut(s) 340
BpuEI CTTGAG 1 cut(s) 17
BpuMI CCSGG 2 cut(s) 584, 657
BsaAI YACGTR 1 cut(s) 463
BsaBI GATNNNNATC 2 cut(s) 68, 74
BsaJI CCNNGG 2 cut(s) 376, 656
BsaWI WCCGGW 2 cut(s) 748, 868
BsaXI ACNNNNNCTCC 3 cut(s) 28, 652, 682
Bsc4I CCNNNNNNNGG 1 cut(s) 751
Bse1I ACTGG 1 cut(s) 640
Bse8I GATNNNNATC 2 cut(s) 68, 74
BseDI CCNNGG 2 cut(s) 376, 656
BseGI GGATG 2 cut(s) 182, 669
BseJI GATNNNNATC 2 cut(s) 68, 74
BseLI CCNNNNNNNGG 1 cut(s) 751
BseMII CTCAG 1 cut(s) 173
BseNI ACTGG 1 cut(s) 640
BsiSI CCGG 4 cut(s) 584, 656, 749, 869
BslI CCNNNNNNNGG 1 cut(s) 751
BsmAI GTCTC 5 cut(s) 286, 292, 318, 593, 805
BsmBI CGTCTC 1 cut(s) 593
Bsp1286I GDGCHC 1 cut(s) 847
Bsp19I CCATGG 1 cut(s) 376
BspACI CCGC 3 cut(s) 587, 683, 886
BspCNI CTCAG 1 cut(s) 172
BspLI GGNNCC 1 cut(s) 52
BspPI GGATC 2 cut(s) 536, 618
BsrI ACTGG 1 cut(s) 640
BssECI CCNNGG 2 cut(s) 376, 656
BssSI CACGAG 1 cut(s) 846
BssT1I CCWWGG 1 cut(s) 376
Bst2BI CACGAG 1 cut(s) 846
Bst4CI ACNGT 3 cut(s) 353, 704, 746
Bst6I CTCTTC 3 cut(s) 106, 115, 516
BstBAI YACGTR 1 cut(s) 463
BstDEI CTNAG 6 cut(s) 82, 159, 340, 432, 448, 815
BstDSI CCRYGG 1 cut(s) 376
BstEII GGTNACC 1 cut(s) 638
BstF5I GGATG 2 cut(s) 182, 669
BstMAI GTCTC 5 cut(s) 286, 292, 318, 593, 805
BstMWI GCNNNNNNNGC 1 cut(s) 419
BstPI GGTNACC 1 cut(s) 638
BstSCI CCNGG 2 cut(s) 582, 655
BstV2I GAAGAC 1 cut(s) 411
BstX2I RGATCY 2 cut(s) 530, 610
BstYI RGATCY 2 cut(s) 530, 610
BtgI CCRYGG 1 cut(s) 376
BtsCI GGATG 2 cut(s) 182, 669
Cfr13I GGNCC 1 cut(s) 6
Csp6I GTAC 1 cut(s) 387
CviAII CATG 3 cut(s) 377, 619, 644
CviJI RGCY 8 cut(s) 118, 339, 413, 499, 653, 688, 695, 845
CviKI_1 RGCY 8 cut(s) 118, 339, 413, 499, 653, 688, 695, 845
CviQI GTAC 1 cut(s) 387
DdeI CTNAG 6 cut(s) 82, 159, 340, 432, 448, 815
DrdI GACNNNNNNGTC 2 cut(s) 479, 864
DriI GACNNNNNGTC 1 cut(s) 310
DseDI GACNNNNNNGTC 2 cut(s) 479, 864
Eam1104I CTCTTC 3 cut(s) 106, 115, 516
Eam1105I GACNNNNNGTC 1 cut(s) 310
EarI CTCTTC 3 cut(s) 106, 115, 516
EciI GGCGGA 1 cut(s) 602
Eco130I CCWWGG 1 cut(s) 376
Eco24I GRGCYC 1 cut(s) 847
Eco47I GGWCC 1 cut(s) 6
Eco91I GGTNACC 1 cut(s) 638
EcoO65I GGTNACC 1 cut(s) 638
EcoT14I CCWWGG 1 cut(s) 376
EcoT22I ATGCAT 1 cut(s) 229
EcoT38I GRGCYC 1 cut(s) 847
ErhI CCWWGG 1 cut(s) 376
Esp3I CGTCTC 1 cut(s) 593
FaeI CATG 3 cut(s) 380, 622, 647
FaiI YATR 8 cut(s) 41, 47, 165, 378, 620, 645, 792, 794
FalI AAGNNNNNCTT 2 cut(s) 284, 316
FatI CATG 3 cut(s) 376, 618, 643
FauI CCCGC 1 cut(s) 676
FbaI TGATCA 2 cut(s) 69, 615
Fnu4HI GCNGC 1 cut(s) 886
FokI GGATG 2 cut(s) 189, 676
FriOI GRGCYC 1 cut(s) 847
Fsp4HI GCNGC 1 cut(s) 886
FspBI CTAG 3 cut(s) 246, 509, 834
GluI GCNGC 1 cut(s) 886
HapII CCGG 4 cut(s) 584, 656, 749, 869
Hin1II CATG 3 cut(s) 380, 622, 647
HincII GTYRAC 1 cut(s) 742
HindII GTYRAC 1 cut(s) 742
HindIII AAGCTT 1 cut(s) 411
HinfI GANTC 3 cut(s) 297, 452, 488
HpaI GTTAAC 1 cut(s) 742
HpaII CCGG 4 cut(s) 584, 656, 749, 869
HphI GGTGA 1 cut(s) 725
Hpy166II GTNNAC 3 cut(s) 469, 733, 742
Hpy188I TCNGA 6 cut(s) 223, 493, 520, 541, 546, 615
Hpy188III TCNNGA 4 cut(s) 61, 67, 347, 734
Hpy8I GTNNAC 3 cut(s) 469, 733, 742
Hpy99I CGWCG 1 cut(s) 740
HpyAV CCTTC 1 cut(s) 167
HpyCH4III ACNGT 3 cut(s) 353, 704, 746
HpyCH4IV ACGT 5 cut(s) 240, 252, 462, 723, 738
HpyCH4V TGCA 3 cut(s) 198, 227, 629
HpyF10VI GCNNNNNNNGC 1 cut(s) 419
HpyF3I CTNAG 6 cut(s) 82, 159, 340, 432, 448, 815
HpySE526I ACGT 5 cut(s) 240, 252, 462, 723, 738
Hsp92II CATG 3 cut(s) 380, 622, 647
Ksp22I TGATCA 2 cut(s) 69, 615
KspAI GTTAAC 1 cut(s) 742
LmnI GCTCC 2 cut(s) 658, 799
LpnPI CCDG 6 cut(s) 597, 621, 669, 762, 837, 882
LweI GCATC 4 cut(s) 195, 214, 374, 616
MaeI CTAG 3 cut(s) 246, 509, 834
MaeII ACGT 5 cut(s) 240, 252, 462, 723, 738
MaeIII GTNAC 8 cut(s) 241, 248, 253, 320, 344, 427, 638, 698
MflI RGATCY 2 cut(s) 530, 610
MhlI GDGCHC 1 cut(s) 847
MlyI GAGTC 1 cut(s) 306
MmeI TCCRAC 1 cut(s) 206
MnlI CCTC 4 cut(s) 64, 118, 654, 789
Mph1103I ATGCAT 1 cut(s) 229
MroXI GAANNNNTTC 1 cut(s) 578
MseI TTAA 5 cut(s) 27, 356, 372, 741, 892
MslI CAYNNNNRTG 2 cut(s) 193, 203
MspI CCGG 4 cut(s) 584, 656, 749, 869
MspR9I CCNGG 2 cut(s) 584, 657
MwoI GCNNNNNNNGC 1 cut(s) 419
NciI CCSGG 2 cut(s) 584, 657
NcoI CCATGG 1 cut(s) 376
NlaIII CATG 3 cut(s) 380, 622, 647
NlaIV GGNNCC 1 cut(s) 52
NmeAIII GCCGAG 1 cut(s) 746
NmuCI GTSAC 3 cut(s) 241, 253, 344
NsiI ATGCAT 1 cut(s) 229
PcsI WCGNNNNNNNCGW 2 cut(s) 468, 853
PdmI GAANNNNTTC 1 cut(s) 578
PfeI GAWTC 2 cut(s) 452, 488
PkrI GCNGC 1 cut(s) 887
PleI GAGTC 1 cut(s) 305
PpsI GAGTC 1 cut(s) 305
Ppu21I YACGTR 1 cut(s) 463
PspEI GGTNACC 1 cut(s) 638
PspN4I GGNNCC 1 cut(s) 52
PspPI GGNCC 1 cut(s) 6
PsuI RGATCY 2 cut(s) 530, 610
RsaI GTAC 1 cut(s) 388
RsaNI GTAC 1 cut(s) 387
RseI CAYNNNNRTG 2 cut(s) 193, 203
SaqAI TTAA 5 cut(s) 27, 356, 372, 741, 892
SatI GCNGC 1 cut(s) 886
Sau96I GGNCC 1 cut(s) 6
SchI GAGTC 1 cut(s) 306
ScrFI CCNGG 2 cut(s) 584, 657
SduI GDGCHC 1 cut(s) 847
SfaNI GCATC 4 cut(s) 195, 214, 374, 616
SinI GGWCC 1 cut(s) 6
SmiMI CAYNNNNRTG 2 cut(s) 193, 203
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
SpeI ACTAGT 1 cut(s) 245
SsiI CCGC 3 cut(s) 587, 683, 886
SspMI CTAG 3 cut(s) 246, 509, 834
StyD4I CCNGG 2 cut(s) 582, 655
StyI CCWWGG 1 cut(s) 376
TaaI ACNGT 3 cut(s) 353, 704, 746
TaiI ACGT 5 cut(s) 243, 255, 465, 726, 741
TauI GCSGC 1 cut(s) 888
TfiI GAWTC 2 cut(s) 452, 488
Tru1I TTAA 5 cut(s) 27, 356, 372, 741, 892
Tru9I TTAA 5 cut(s) 27, 356, 372, 741, 892
TseFI GTSAC 3 cut(s) 241, 253, 344
Tsp45I GTSAC 3 cut(s) 241, 253, 344
TspDTI ATGAA 4 cut(s) 34, 224, 291, 660
VpaK11BI GGWCC 1 cut(s) 6
XmnI GAANNNNTTC 1 cut(s) 578
XspI CTAG 3 cut(s) 246, 509, 834
Zsp2I ATGCAT 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.