Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009914

Physical Location & Seq

Genomic Coordinates Forward (+)

44719454 .. 44721427

Gene Structure 1974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G547100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGAGGTCCAAAACTCAATGTGGCATCAATCTCAACCTGATCCTCCTCTGCTGCTTCTTCATCTTCCTCTTCACCATCTTCATAATCAGATCGAACTTCTCATCTCCCCTCCAAACCCCATCTACATCCACATCCATCAACATCTCCCAAGCCCATCTCTCAACCTCAACCCCTCACTCCAAATCCCCACAATCCTCAACACCATGCCCTTCCCTTGAACAACCCTTCATCCCAACATGCACTAAAACCCCACCTTCCCTAGCCAATGCCATCATTCACTATGCAACAACAAACATCACCCCACAACAAACCATCAAAGAAATATCAGTCTCATCCAGAATCCTACAAAAGAAATCACCCTGCAATTTCCTAGTCTTTGGCCTTGGACTTGACAGCTTGATGTGGACAGCTCTCAACCATGGAGGAAGAACAGTTTTCTTGGAAGAAGACAAGTCATGGATTGAGCAAATCCAACAAAAGCTACCCAACTTGGAGGCCTACCATGTTTCCTATGACACCAAGGTTCACCAAGCAGACAAGCTCATGGAGATTGGGATGAAGGAAGAGTGCAAAGTTGTTGGGGATCCAAGATTTTCAAAGTGTGAATTGGCCCTCAAGAACTGGCCAAGTGAGGTGTATGACATAGAGTGGGATTTGATCATGGTGGATGCACCCACAGGGTACTTTGATGGAGCTCCAGGCAGAATGAGTGCCATATACACAGCTGGGTTGTTGGGGAGGAACAGAGAGGAAGGGGAGACTGATGTGTTTGTGCATGATGTGGACAGAAATGTAGAGGATAAATTCTCAAAGGCTTTCCTTTGTGAAGGATACTTGAGAGAAGAAGAGGGTAGAATTAGGCGCTTCACCATTCCAAGTCACAGGGCTCGCTTGGGCAGACCCTTTTGCCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Polysacc_synt_4

Protein Analysis

305

Amino Acids

34.32

Weight (kDa)

6.71

Isoelectric Point (pI)

54.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009914)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33800 AT4G09990
fragaria_vesca	FvH4_5g32940
malus_domestica	MD03G1203200.v1.1 MD08G1215400.v1.1 MD15G1399700.v1.1
prunus_persica	Prupe.1G547100_v2.0.a1
pyrus_communis	pycom15g35850
rosa_chinensis	RchiOBHm_Chr7g0230891
rosa_laevigata	RLG00000001452
rosa_multiflora	Rmu_co8000114.1_g000001 Rmu_sc0000483.1_g000011 Rmu_sc0000551.1_g000012
rosa_roxburghii	Rroxscaffold_3G00229720
rosa_rugosa	Rorug07G0263100
rosa_samantha	Rh7AG416200 Rh7BG392200 Rh7CG435300 Rh7DG410700
rosa_wichuraiana	Rw7G034320 Rw7G034480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	34, 578, 591
AcoI	YGGCCR	1 cut(s)	623
AcsI	RAATTY	1 cut(s)	803
AfaI	GTAC	1 cut(s)	683
AgsI	TTSAA	2 cut(s)	218, 597
AjnI	CCWGG	1 cut(s)	697
AluBI	AGCT	6 cut(s)	396, 410, 481, 541, 695, 725
AluI	AGCT	6 cut(s)	396, 410, 481, 541, 695, 725
Alw21I	GWGCWC	1 cut(s)	697
Alw26I	GTCTC	2 cut(s)	334, 752
AlwI	GGATC	3 cut(s)	34, 578, 591
AoxI	GGCC	4 cut(s)	379, 495, 609, 623
ApeKI	GCWGC	1 cut(s)	51
ApoI	RAATTY	1 cut(s)	803
AspLEI	GCGC	1 cut(s)	864
AspS9I	GGNCC	2 cut(s)	6, 610
AsuHPI	GGTGA	5 cut(s)	64, 289, 348, 518, 859
AvaII	GGWCC	1 cut(s)	6
BalI	TGGCCA	1 cut(s)	625
BamHI	GGATCC	1 cut(s)	583
BanII	GRGCYC	2 cut(s)	697, 889
BbsI	GAAGAC	1 cut(s)	453
Bbv12I	GWGCWC	1 cut(s)	697
BbvI	GCAGC	1 cut(s)	38
BccI	CCATC	7 cut(s)	83, 127, 143, 162, 278, 320, 683
BciT130I	CCWGG	1 cut(s)	699
BciVI	GTATCC	1 cut(s)	824
BclI	TGATCA	1 cut(s)	657
BcoDI	GTCTC	2 cut(s)	334, 752
BfaI	CTAG	2 cut(s)	260, 371
BfoI	RGCGCY	1 cut(s)	865
BfuI	GTATCC	1 cut(s)	824
BisI	GCNGC	1 cut(s)	52
BlsI	GCNGC	1 cut(s)	53
Bme1390I	CCNGG	1 cut(s)	699
Bme18I	GGWCC	1 cut(s)	6
BmgT120I	GGNCC	2 cut(s)	6, 610
BmiI	GGNNCC	1 cut(s)	585
BmrFI	CCNGG	1 cut(s)	699
BmsI	GCATC	2 cut(s)	33, 658
BpiI	GAAGAC	1 cut(s)	453
BpmI	CTGGAG	1 cut(s)	681
BpuEI	CTTGAG	2 cut(s)	599, 856
BsaJI	CCNNGG	3 cut(s)	382, 418, 519
Bse1I	ACTGG	1 cut(s)	626
BseBI	CCWGG	1 cut(s)	699
BseDI	CCNNGG	3 cut(s)	382, 418, 519
BseGI	GGATG	6 cut(s)	125, 131, 228, 332, 561, 673
BseNI	ACTGG	1 cut(s)	626
BseRI	GAGGAG	1 cut(s)	35
BseXI	GCAGC	1 cut(s)	38
BseYI	CCCAGC	1 cut(s)	725
BshFI	GGCC	4 cut(s)	381, 497, 611, 625
BsiHKAI	GWGCWC	1 cut(s)	697
BsmAI	GTCTC	2 cut(s)	334, 752
BsnI	GGCC	4 cut(s)	381, 497, 611, 625
Bsp1286I	GDGCHC	2 cut(s)	697, 889
Bsp143I	GATC	4 cut(s)	39, 89, 583, 657
Bsp19I	CCATGG	1 cut(s)	418
BspANI	GGCC	4 cut(s)	381, 497, 611, 625
BspLI	GGNNCC	1 cut(s)	585
BspPI	GGATC	3 cut(s)	34, 578, 591
BsrI	ACTGG	1 cut(s)	626
BssECI	CCNNGG	3 cut(s)	382, 418, 519
BssMI	GATC	4 cut(s)	39, 89, 583, 657
BssT1I	CCWWGG	3 cut(s)	382, 418, 519
Bst2UI	CCWGG	1 cut(s)	699
Bst4CI	ACNGT	1 cut(s)	433
Bst6I	CTCTTC	3 cut(s)	74, 558, 840
BstC8I	GCNNGC	1 cut(s)	889
BstDSI	CCRYGG	1 cut(s)	418
BstF5I	GGATG	6 cut(s)	125, 131, 228, 332, 561, 673
BstH2I	RGCGCY	1 cut(s)	865
BstHHI	GCGC	1 cut(s)	864
BstKTI	GATC	4 cut(s)	42, 92, 586, 660
BstMAI	GTCTC	2 cut(s)	334, 752
BstMBI	GATC	4 cut(s)	39, 89, 583, 657
BstNI	CCWGG	1 cut(s)	699
BstNSI	RCATGY	1 cut(s)	240
BstSCI	CCNGG	1 cut(s)	697
BstV1I	GCAGC	1 cut(s)	38
BstV2I	GAAGAC	1 cut(s)	453
BstX2I	RGATCY	1 cut(s)	583
BstYI	RGATCY	1 cut(s)	583
BsuI	GTATCC	1 cut(s)	824
BsuRI	GGCC	4 cut(s)	381, 497, 611, 625
BtgI	CCRYGG	1 cut(s)	418
BtsCI	GGATG	6 cut(s)	125, 131, 228, 332, 561, 673
Cac8I	GCNNGC	1 cut(s)	889
CfoI	GCGC	1 cut(s)	864
Cfr13I	GGNCC	2 cut(s)	6, 610
Csp6I	GTAC	1 cut(s)	682
CviAII	CATG	8 cut(s)	204, 237, 419, 456, 503, 544, 661, 776
CviQI	GTAC	1 cut(s)	682
DpnI	GATC	4 cut(s)	41, 91, 585, 659
DpnII	GATC	4 cut(s)	39, 89, 583, 657
EaeI	YGGCCR	1 cut(s)	623
Eam1104I	CTCTTC	3 cut(s)	74, 558, 840
EarI	CTCTTC	3 cut(s)	74, 558, 840
Ecl136II	GAGCTC	1 cut(s)	695
Eco130I	CCWWGG	3 cut(s)	382, 418, 519
Eco147I	AGGCCT	1 cut(s)	497
Eco24I	GRGCYC	2 cut(s)	697, 889
Eco47I	GGWCC	1 cut(s)	6
Eco53kI	GAGCTC	1 cut(s)	695
EcoICRI	GAGCTC	1 cut(s)	695
EcoRII	CCWGG	1 cut(s)	697
EcoT14I	CCWWGG	3 cut(s)	382, 418, 519
EcoT38I	GRGCYC	2 cut(s)	697, 889
ErhI	CCWWGG	3 cut(s)	382, 418, 519
FaeI	CATG	8 cut(s)	207, 240, 422, 459, 506, 547, 664, 779
FatI	CATG	8 cut(s)	203, 236, 418, 455, 502, 543, 660, 775
FbaI	TGATCA	1 cut(s)	657
Fnu4HI	GCNGC	1 cut(s)	52
FokI	GGATG	6 cut(s)	112, 118, 215, 319, 568, 680
FriOI	GRGCYC	2 cut(s)	697, 889
Fsp4HI	GCNGC	1 cut(s)	52
FspBI	CTAG	2 cut(s)	260, 371
GlaI	GCGC	1 cut(s)	863
GluI	GCNGC	1 cut(s)	52
GsaI	CCCAGC	1 cut(s)	729
GsuI	CTGGAG	1 cut(s)	681
HaeII	RGCGCY	1 cut(s)	865
HaeIII	GGCC	4 cut(s)	381, 497, 611, 625
HhaI	GCGC	1 cut(s)	864
Hin1II	CATG	8 cut(s)	207, 240, 422, 459, 506, 547, 664, 779
Hin6I	GCGC	1 cut(s)	862
HinP1I	GCGC	1 cut(s)	862
HinfI	GANTC	1 cut(s)	339
HphI	GGTGA	5 cut(s)	64, 289, 348, 518, 859
Hpy166II	GTNNAC	3 cut(s)	405, 526, 784
Hpy188I	TCNGA	1 cut(s)	89
Hpy188III	TCNNGA	2 cut(s)	336, 616
Hpy8I	GTNNAC	3 cut(s)	405, 526, 784
HpyAV	CCTTC	6 cut(s)	219, 235, 264, 553, 746, 821
HpyCH4III	ACNGT	1 cut(s)	433
HpyCH4V	TGCA	6 cut(s)	240, 284, 363, 570, 671, 775
Hsp92II	CATG	8 cut(s)	207, 240, 422, 459, 506, 547, 664, 779
HspAI	GCGC	1 cut(s)	862
Ksp22I	TGATCA	1 cut(s)	657
Kzo9I	GATC	4 cut(s)	39, 89, 583, 657
LmnI	GCTCC	2 cut(s)	692, 700
LpnPI	CCDG	9 cut(s)	50, 349, 373, 607, 663, 684, 711, 711, 868
Lsp1109I	GCAGC	1 cut(s)	38
LweI	GCATC	2 cut(s)	33, 658
MaeI	CTAG	2 cut(s)	260, 371
MaeIII	GTNAC	1 cut(s)	878
MalI	GATC	4 cut(s)	41, 91, 585, 659
MboI	GATC	4 cut(s)	39, 89, 583, 657
MflI	RGATCY	1 cut(s)	583
MhlI	GDGCHC	2 cut(s)	697, 889
MlsI	TGGCCA	1 cut(s)	625
MluCI	AATT	4 cut(s)	364, 605, 803, 855
MluNI	TGGCCA	1 cut(s)	625
MmeI	TCCRAC	1 cut(s)	496
Mox20I	TGGCCA	1 cut(s)	625
MscI	TGGCCA	1 cut(s)	625
Msp20I	TGGCCA	1 cut(s)	625
MspA1I	CMGCKG	1 cut(s)	725
MspR9I	CCNGG	1 cut(s)	699
MvaI	CCWGG	1 cut(s)	699
NcoI	CCATGG	1 cut(s)	418
NdeII	GATC	4 cut(s)	39, 89, 583, 657
NlaIII	CATG	8 cut(s)	207, 240, 422, 459, 506, 547, 664, 779
NlaIV	GGNNCC	1 cut(s)	585
NmuCI	GTSAC	1 cut(s)	878
NspI	RCATGY	1 cut(s)	240
PceI	AGGCCT	1 cut(s)	497
PfeI	GAWTC	1 cut(s)	339
PkrI	GCNGC	1 cut(s)	53
Psp124BI	GAGCTC	1 cut(s)	697
Psp6I	CCWGG	1 cut(s)	697
PspFI	CCCAGC	1 cut(s)	725
PspGI	CCWGG	1 cut(s)	697
PspN4I	GGNNCC	1 cut(s)	585
PspPI	GGNCC	2 cut(s)	6, 610
PsuI	RGATCY	1 cut(s)	583
PvuII	CAGCTG	1 cut(s)	725
RsaI	GTAC	1 cut(s)	683
RsaNI	GTAC	1 cut(s)	682
SacI	GAGCTC	1 cut(s)	697
SatI	GCNGC	1 cut(s)	52
Sau3AI	GATC	4 cut(s)	39, 89, 583, 657
Sau96I	GGNCC	2 cut(s)	6, 610
ScrFI	CCNGG	1 cut(s)	699
SduI	GDGCHC	2 cut(s)	697, 889
SfaNI	GCATC	2 cut(s)	33, 658
SinI	GGWCC	1 cut(s)	6
SmlI	CTYRAG	2 cut(s)	614, 835
SmoI	CTYRAG	2 cut(s)	614, 835
Sse9I	AATT	4 cut(s)	364, 605, 803, 855
SseBI	AGGCCT	1 cut(s)	497
SspMI	CTAG	2 cut(s)	260, 371
SstI	GAGCTC	1 cut(s)	697
StuI	AGGCCT	1 cut(s)	497
StyD4I	CCNGG	1 cut(s)	697
StyI	CCWWGG	3 cut(s)	382, 418, 519
TaaI	ACNGT	1 cut(s)	433
TaqI	TCGA	1 cut(s)	92
TasI	AATT	4 cut(s)	364, 605, 803, 855
TfiI	GAWTC	1 cut(s)	339
TseFI	GTSAC	1 cut(s)	878
TseI	GCWGC	1 cut(s)	51
Tsp45I	GTSAC	1 cut(s)	878
TspDTI	ATGAA	4 cut(s)	49, 70, 217, 572
VpaK11BI	GGWCC	1 cut(s)	6
XapI	RAATTY	1 cut(s)	803
XceI	RCATGY	1 cut(s)	240
XspI	CTAG	2 cut(s)	260, 371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.