Rw7G034480

Glucuronoxylan 4-O-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0009914
Physical Location & Seq
Forward (+)
51155831 .. 51157001
1171 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G034480.1

Sequence Viewer

Length: 903 bp
ATGAGGTCCAAGCCTCAATGTGGCATTAATCTCAAGCTCATTGTCCTCTTCTGCTCCTTTCTCCTCCTCTTCCTTATCTTAATACTCAGATCAAACCTCGCATCTCCTCTGAAAACCCCATCTTCATCATCCACCACGATCTCAGAAACCCACCTTTCAAATTCAACTACTGATCAACCTCGAGTCCCAAAATGCCCATCACTTGAAGTACCCTTCATTCCCACATGCACAAAAACCCCACCTTCCTTAGCCAATGCCCTCATCCACTACGCCACCACAAACATCACCCCACAGCAAACCTTCAAAGAAATATCAGTATCAGCAAGGATCTTAGCCAAGAAGGCGCCCTGCAACTTCCTTGTCTTCGGCTTAGGCCTCGACAGCCTCATGTGGGCAGCTCTCAATCACGGCGGCCGCACCGTTTTCCTAGAAGAGGACCAGTCCTGGATCGACCAGATCAAAGAACGACTACCCAACTTGGAATCCTACCACGTCGTGTACGACACCAAAGTTCATGAAGCTGAGAAGCTCTTCGAGCATGGCACGAAGGAAGAGTGCAAGACTGTGAGCGATCCAAGGTTTTCCAAGTGCCCATTGACGCTGAAGAACTTGCCGGGAGATGTGTACGACATGGAATGGGATTTGATCATGGTGGATGCACCTACAGGGTACTTTGATGGAGCTCCCGGTCGGATGAGTGCTATATACACGGCGGGTTTGATGGGGAGGAACAGAGAGGAGGGTGAGACTGATGTGTTTGTTCATGATGTAGATAGAGTGGTCGAGGATAAATTTTCCAAGGCGTTTCTTTGTGAAGGGTATTTGAGAGAACAAGAGGGGAGGATTAGGCATTTTACGATTCCGAGTCACAGAACTCGTCTCGGCAGACCATTTTGCCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Polysacc_synt_4

Protein Analysis

300

Amino Acids

33.78

Weight (kDa)

6.75

Isoelectric Point (pI)

43.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IRX15_IRX15L_GXM PF21729 102 - 285 9.4e-78 IRX15/IRX15L/GXM
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 343
AciI CCGC 3 cut(s) 411, 415, 713
AclWI GGATC 3 cut(s) 335, 455, 566
AcoI YGGCCR 1 cut(s) 412
AcsI RAATTY 2 cut(s) 160, 791
AcuI CTGAAG 1 cut(s) 623
AcyI GRCGYC 1 cut(s) 344
AdeI CACNNNGTG 1 cut(s) 496
AfaI GTAC 4 cut(s) 210, 500, 626, 671
AfiI CCNNNNNNNGG 3 cut(s) 20, 391, 433
AgsI TTSAA 4 cut(s) 159, 165, 206, 304
AjiI CACGTC 1 cut(s) 493
AjnI CCWGG 1 cut(s) 443
AluBI AGCT 5 cut(s) 37, 398, 521, 529, 683
AluI AGCT 5 cut(s) 37, 398, 521, 529, 683
Alw21I GWGCWC 1 cut(s) 685
Alw26I GTCTC 2 cut(s) 740, 884
AlwI GGATC 3 cut(s) 335, 455, 566
Ama87I CYCGRG 1 cut(s) 180
AoxI GGCC 2 cut(s) 373, 412
ApeKI GCWGC 1 cut(s) 395
ApoI RAATTY 2 cut(s) 160, 791
AseI ATTAAT 1 cut(s) 27
Asp700I GAANNNNTTC 1 cut(s) 530
AspLEI GCGC 1 cut(s) 346
AspS9I GGNCC 2 cut(s) 6, 436
AsuC2I CCSGG 2 cut(s) 615, 687
AsuHPI GGTGA 2 cut(s) 277, 755
AvaI CYCGRG 1 cut(s) 180
AvaII GGWCC 2 cut(s) 6, 436
BaeGI GKGCMC 1 cut(s) 593
BanI GGYRCC 1 cut(s) 343
BanII GRGCYC 1 cut(s) 685
BbsI GAAGAC 1 cut(s) 355
Bbv12I GWGCWC 1 cut(s) 685
BbvI GCAGC 1 cut(s) 407
BccI CCATC 4 cut(s) 127, 205, 671, 715
BceAI ACGGC 2 cut(s) 424, 726
BciT130I CCWGG 1 cut(s) 445
BclI TGATCA 2 cut(s) 172, 645
BcnI CCSGG 2 cut(s) 615, 687
BcoDI GTCTC 2 cut(s) 740, 884
BfaI CTAG 1 cut(s) 428
BfmI CTRYAG 1 cut(s) 663
BfoI RGCGCY 1 cut(s) 347
BglI GCCNNNNNGGC 1 cut(s) 341
BisI GCNGC 3 cut(s) 396, 412, 415
BlsI GCNGC 3 cut(s) 397, 413, 416
Bme1390I CCNGG 3 cut(s) 445, 615, 687
Bme18I GGWCC 2 cut(s) 6, 436
BmeT110I CYCGRG 1 cut(s) 180
BmgBI CACGTC 1 cut(s) 493
BmgT120I GGNCC 2 cut(s) 6, 436
BmiI GGNNCC 1 cut(s) 345
BmrFI CCNGG 3 cut(s) 445, 615, 687
BmsI GCATC 2 cut(s) 110, 646
BpiI GAAGAC 1 cut(s) 355
Bpu10I CCTNAGC 2 cut(s) 247, 370
BpuEI CTTGAG 1 cut(s) 17
BpuMI CCSGG 2 cut(s) 615, 687
BsaHI GRCGYC 1 cut(s) 344
BsaJI CCNNGG 2 cut(s) 575, 798
Bsc4I CCNNNNNNNGG 3 cut(s) 20, 391, 433
Bse1I ACTGG 1 cut(s) 439
BseBI CCWGG 1 cut(s) 445
BseDI CCNNGG 2 cut(s) 575, 798
BseGI GGATG 4 cut(s) 128, 261, 661, 699
BseLI CCNNNNNNNGG 3 cut(s) 20, 391, 433
BseMII CTCAG 3 cut(s) 100, 156, 513
BseNI ACTGG 1 cut(s) 439
BseRI GAGGAG 4 cut(s) 53, 56, 96, 752
BseSI GKGCMC 1 cut(s) 593
BseX3I CGGCCG 1 cut(s) 412
BseXI GCAGC 1 cut(s) 407
Bsh1285I CGRYCG 2 cut(s) 415, 691
BshFI GGCC 2 cut(s) 375, 414
BshNI GGYRCC 1 cut(s) 343
BsiEI CGRYCG 2 cut(s) 415, 691
BsiHKAI GWGCWC 1 cut(s) 685
BsiHKCI CYCGRG 1 cut(s) 180
BsiSI CCGG 2 cut(s) 614, 687
BslFI GGGAC 1 cut(s) 170
BslI CCNNNNNNNGG 3 cut(s) 20, 391, 433
BsmAI GTCTC 2 cut(s) 740, 884
BsmBI CGTCTC 1 cut(s) 884
BsmFI GGGAC 1 cut(s) 170
BsnI GGCC 2 cut(s) 375, 414
BsoBI CYCGRG 1 cut(s) 180
Bsp1286I GDGCHC 2 cut(s) 593, 685
Bsp143I GATC 8 cut(s) 89, 138, 172, 327, 447, 456, 571, 645
BspACI CCGC 3 cut(s) 411, 415, 713
BspANI GGCC 2 cut(s) 375, 414
BspCNI CTCAG 3 cut(s) 99, 155, 514
BspHI TCATGA 2 cut(s) 514, 763
BspLI GGNNCC 1 cut(s) 345
BspPI GGATC 3 cut(s) 335, 455, 566
BspQI GCTCTTC 1 cut(s) 536
BspT107I GGYRCC 1 cut(s) 343
BsrI ACTGG 1 cut(s) 439
BssECI CCNNGG 2 cut(s) 575, 798
BssMI GATC 8 cut(s) 89, 138, 172, 327, 447, 456, 571, 645
BssNI GRCGYC 1 cut(s) 344
BssT1I CCWWGG 2 cut(s) 575, 798
Bst2UI CCWGG 1 cut(s) 445
Bst4CI ACNGT 2 cut(s) 421, 565
Bst6I CTCTTC 5 cut(s) 53, 74, 426, 536, 546
BstACI GRCGYC 1 cut(s) 344
BstDEI CTNAG 6 cut(s) 86, 142, 247, 331, 370, 522
BstENI CCTNNNNNAGG 1 cut(s) 431
BstF5I GGATG 4 cut(s) 128, 261, 661, 699
BstH2I RGCGCY 1 cut(s) 347
BstHHI GCGC 1 cut(s) 346
BstKTI GATC 8 cut(s) 92, 141, 175, 330, 450, 459, 574, 648
BstMAI GTCTC 2 cut(s) 740, 884
BstMBI GATC 8 cut(s) 89, 138, 172, 327, 447, 456, 571, 645
BstMCI CGRYCG 2 cut(s) 415, 691
BstMWI GCNNNNNNNGC 3 cut(s) 341, 381, 535
BstNI CCWGG 1 cut(s) 445
BstNSI RCATGY 1 cut(s) 228
BstSCI CCNGG 3 cut(s) 443, 613, 685
BstSFI CTRYAG 1 cut(s) 663
BstSLI GKGCMC 1 cut(s) 593
BstV1I GCAGC 1 cut(s) 407
BstV2I GAAGAC 1 cut(s) 355
BstX2I RGATCY 1 cut(s) 327
BstYI RGATCY 1 cut(s) 327
BstZI CGGCCG 1 cut(s) 412
BsuRI GGCC 2 cut(s) 375, 414
BtrI CACGTC 1 cut(s) 493
BtsCI GGATG 4 cut(s) 128, 261, 661, 699
CciI TCATGA 2 cut(s) 514, 763
CciNI GCGGCCGC 1 cut(s) 412
CfoI GCGC 1 cut(s) 346
Cfr13I GGNCC 2 cut(s) 6, 436
CseI GACGC 1 cut(s) 607
Csp6I GTAC 4 cut(s) 209, 499, 625, 670
CviAII CATG 7 cut(s) 225, 388, 515, 539, 631, 649, 764
CviQI GTAC 4 cut(s) 209, 499, 625, 670
DdeI CTNAG 6 cut(s) 86, 142, 247, 331, 370, 522
DinI GGCGCC 1 cut(s) 345
DpnI GATC 8 cut(s) 91, 140, 174, 329, 449, 458, 573, 647
DpnII GATC 8 cut(s) 89, 138, 172, 327, 447, 456, 571, 645
DraIII CACNNNGTG 1 cut(s) 496
EaeI YGGCCR 1 cut(s) 412
EagI CGGCCG 1 cut(s) 412
Eam1104I CTCTTC 5 cut(s) 53, 74, 426, 536, 546
EarI CTCTTC 5 cut(s) 53, 74, 426, 536, 546
Ecl136II GAGCTC 1 cut(s) 683
EclXI CGGCCG 1 cut(s) 412
Eco130I CCWWGG 2 cut(s) 575, 798
Eco147I AGGCCT 1 cut(s) 375
Eco24I GRGCYC 1 cut(s) 685
Eco47I GGWCC 2 cut(s) 6, 436
Eco52I CGGCCG 1 cut(s) 412
Eco53kI GAGCTC 1 cut(s) 683
Eco57I CTGAAG 1 cut(s) 623
Eco88I CYCGRG 1 cut(s) 180
EcoICRI GAGCTC 1 cut(s) 683
EcoNI CCTNNNNNAGG 1 cut(s) 431
EcoRII CCWGG 1 cut(s) 443
EcoT14I CCWWGG 2 cut(s) 575, 798
EcoT38I GRGCYC 1 cut(s) 685
EgeI GGCGCC 1 cut(s) 345
EheI GGCGCC 1 cut(s) 345
ErhI CCWWGG 2 cut(s) 575, 798
Esp3I CGTCTC 1 cut(s) 884
FaeI CATG 7 cut(s) 228, 391, 518, 542, 634, 652, 767
FaiI YATR 9 cut(s) 226, 389, 516, 540, 632, 650, 704, 706, 765
FaqI GGGAC 1 cut(s) 170
FatI CATG 7 cut(s) 224, 387, 514, 538, 630, 648, 763
FauI CCCGC 1 cut(s) 706
FbaI TGATCA 2 cut(s) 172, 645
Fnu4HI GCNGC 3 cut(s) 396, 412, 415
FokI GGATG 4 cut(s) 115, 248, 668, 706
FriOI GRGCYC 1 cut(s) 685
Fsp4HI GCNGC 3 cut(s) 396, 412, 415
FspBI CTAG 1 cut(s) 428
GlaI GCGC 1 cut(s) 345
GluI GCNGC 3 cut(s) 396, 412, 415
HaeII RGCGCY 1 cut(s) 347
HaeIII GGCC 2 cut(s) 375, 414
HapII CCGG 2 cut(s) 614, 687
HgaI GACGC 1 cut(s) 607
HhaI GCGC 1 cut(s) 346
Hin1I GRCGYC 1 cut(s) 344
Hin1II CATG 7 cut(s) 228, 391, 518, 542, 634, 652, 767
Hin6I GCGC 1 cut(s) 344
HinP1I GCGC 1 cut(s) 344
HinfI GANTC 4 cut(s) 183, 482, 859, 865
HpaII CCGG 2 cut(s) 614, 687
HphI GGTGA 2 cut(s) 277, 755
Hpy166II GTNNAC 2 cut(s) 499, 625
Hpy188I TCNGA 5 cut(s) 89, 111, 145, 693, 864
Hpy188III TCNNGA 2 cut(s) 515, 764
Hpy8I GTNNAC 2 cut(s) 499, 625
Hpy99I CGWCG 1 cut(s) 497
HpyAV CCTTC 6 cut(s) 223, 252, 310, 334, 541, 809
HpyCH4III ACNGT 2 cut(s) 421, 565
HpyCH4IV ACGT 1 cut(s) 492
HpyCH4V TGCA 4 cut(s) 228, 351, 558, 659
HpyF10VI GCNNNNNNNGC 3 cut(s) 341, 381, 535
HpyF3I CTNAG 6 cut(s) 86, 142, 247, 331, 370, 522
HpySE526I ACGT 1 cut(s) 492
Hsp92I GRCGYC 1 cut(s) 344
Hsp92II CATG 7 cut(s) 228, 391, 518, 542, 634, 652, 767
HspAI GCGC 1 cut(s) 344
KasI GGCGCC 1 cut(s) 343
Ksp22I TGATCA 2 cut(s) 172, 645
Kzo9I GATC 8 cut(s) 89, 138, 172, 327, 447, 456, 571, 645
LguI GCTCTTC 1 cut(s) 536
LmnI GCTCC 3 cut(s) 59, 680, 688
LpnPI CCDG 8 cut(s) 361, 430, 452, 457, 467, 627, 651, 700
Lsp1109I GCAGC 1 cut(s) 407
LweI GCATC 2 cut(s) 110, 646
MaeI CTAG 1 cut(s) 428
MaeII ACGT 1 cut(s) 492
MaeIII GTNAC 1 cut(s) 866
MalI GATC 8 cut(s) 91, 140, 174, 329, 449, 458, 573, 647
MboI GATC 8 cut(s) 89, 138, 172, 327, 447, 456, 571, 645
MboII GAAGA 8 cut(s) 40, 61, 114, 355, 443, 523, 563, 616
MflI RGATCY 1 cut(s) 327
MhlI GDGCHC 2 cut(s) 593, 685
MluCI AATT 2 cut(s) 160, 791
Mly113I GGCGCC 1 cut(s) 344
MlyI GAGTC 2 cut(s) 192, 874
MmeI TCCRAC 1 cut(s) 671
MroXI GAANNNNTTC 1 cut(s) 530
MseI TTAA 2 cut(s) 27, 80
MspI CCGG 2 cut(s) 614, 687
MspR9I CCNGG 3 cut(s) 445, 615, 687
MvaI CCWGG 1 cut(s) 445
MwoI GCNNNNNNNGC 3 cut(s) 341, 381, 535
NarI GGCGCC 1 cut(s) 344
NciI CCSGG 2 cut(s) 615, 687
NdeII GATC 8 cut(s) 89, 138, 172, 327, 447, 456, 571, 645
NlaIII CATG 7 cut(s) 228, 391, 518, 542, 634, 652, 767
NlaIV GGNNCC 1 cut(s) 345
NmeAIII GCCGAG 1 cut(s) 861
NmuCI GTSAC 1 cut(s) 866
NotI GCGGCCGC 1 cut(s) 412
NspI RCATGY 1 cut(s) 228
PaeR7I CTCGAG 1 cut(s) 180
PagI TCATGA 2 cut(s) 514, 763
PceI AGGCCT 1 cut(s) 375
PciSI GCTCTTC 1 cut(s) 536
PcsI WCGNNNNNNNCGW 1 cut(s) 498
PdmI GAANNNNTTC 1 cut(s) 530
PfeI GAWTC 2 cut(s) 482, 859
PfoI TCCNGGA 1 cut(s) 443
PkrI GCNGC 3 cut(s) 397, 413, 416
PleI GAGTC 2 cut(s) 191, 873
PluTI GGCGCC 1 cut(s) 347
PpsI GAGTC 2 cut(s) 191, 873
PshBI ATTAAT 1 cut(s) 27
Psp124BI GAGCTC 1 cut(s) 685
Psp6I CCWGG 1 cut(s) 443
PspGI CCWGG 1 cut(s) 443
PspN4I GGNNCC 1 cut(s) 345
PspPI GGNCC 2 cut(s) 6, 436
PspXI VCTCGAGB 1 cut(s) 180
PsuI RGATCY 1 cut(s) 327
RsaI GTAC 4 cut(s) 210, 500, 626, 671
RsaNI GTAC 4 cut(s) 209, 499, 625, 670
SacI GAGCTC 1 cut(s) 685
SapI GCTCTTC 1 cut(s) 536
SaqAI TTAA 2 cut(s) 27, 80
SatI GCNGC 3 cut(s) 396, 412, 415
Sau3AI GATC 8 cut(s) 89, 138, 172, 327, 447, 456, 571, 645
Sau96I GGNCC 2 cut(s) 6, 436
SchI GAGTC 2 cut(s) 192, 874
ScrFI CCNGG 3 cut(s) 445, 615, 687
SduI GDGCHC 2 cut(s) 593, 685
SfaNI GCATC 2 cut(s) 110, 646
SfcI CTRYAG 1 cut(s) 663
SfoI GGCGCC 1 cut(s) 345
Sfr274I CTCGAG 1 cut(s) 180
SinI GGWCC 2 cut(s) 6, 436
SlaI CTCGAG 1 cut(s) 180
SmlI CTYRAG 2 cut(s) 32, 180
SmoI CTYRAG 2 cut(s) 32, 180
Sse9I AATT 2 cut(s) 160, 791
SseBI AGGCCT 1 cut(s) 375
SsiI CCGC 3 cut(s) 411, 415, 713
SspDI GGCGCC 1 cut(s) 343
SspMI CTAG 1 cut(s) 428
SstI GAGCTC 1 cut(s) 685
StuI AGGCCT 1 cut(s) 375
StyD4I CCNGG 3 cut(s) 443, 613, 685
StyI CCWWGG 2 cut(s) 575, 798
TaaI ACNGT 2 cut(s) 421, 565
TaiI ACGT 1 cut(s) 495
TaqI TCGA 5 cut(s) 181, 378, 450, 534, 783
TasI AATT 2 cut(s) 160, 791
TauI GCSGC 2 cut(s) 414, 417
TfiI GAWTC 2 cut(s) 482, 859
Tru1I TTAA 2 cut(s) 27, 80
Tru9I TTAA 2 cut(s) 27, 80
TseFI GTSAC 1 cut(s) 866
TseI GCWGC 1 cut(s) 395
Tsp45I GTSAC 1 cut(s) 866
TspDTI ATGAA 5 cut(s) 114, 205, 503, 531, 752
VpaK11BI GGWCC 2 cut(s) 6, 436
VspI ATTAAT 1 cut(s) 27
XagI CCTNNNNNAGG 1 cut(s) 431
XapI RAATTY 2 cut(s) 160, 791
XceI RCATGY 1 cut(s) 228
XhoI CTCGAG 1 cut(s) 180
XmnI GAANNNNTTC 1 cut(s) 530
XspI CTAG 1 cut(s) 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.