Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8000114.1

Orthogroup ID

OG0009914

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 447

Gene Structure 447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8000114.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

atcaaagaacgactacccaacttggaatcctaccacgtcgtgtacgacaccaaagttcatgaagctgagaagctcttcgagcatggcacgaaggaagagtgcaagactgtgagcgatccaaggttttccaagtgcccattgacgctgaagaacttgccgggagatgtgtacgacatggaatgggatttgatcatggtggatgcgcctacagggtactttgatggagctcccggtcggatgagtgctatatacacggcgggtttgatggggaggaacagagaggagggtgagactgatgtgtttgttcatgatgtagatagagtggtcgaggataaattttccaaggcgtttctttgtgaagggtatttgagagaacaagaggggaggattaggcattttacgattccgagtcacagaactcgtctcggcagaccattttgcccgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Polysacc_synt_4

Protein Analysis

148

Amino Acids

17.08

Weight (kDa)

5.69

Isoelectric Point (pI)

30.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009914)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33800 AT4G09990
fragaria_vesca	FvH4_5g32940
malus_domestica	MD03G1203200.v1.1 MD08G1215400.v1.1 MD15G1399700.v1.1
prunus_persica	Prupe.1G547100_v2.0.a1
pyrus_communis	pycom15g35850
rosa_chinensis	RchiOBHm_Chr7g0230891
rosa_laevigata	RLG00000001452
rosa_multiflora	Rmu_co8000114.1_g000001 Rmu_sc0000483.1_g000011 Rmu_sc0000551.1_g000012
rosa_roxburghii	Rroxscaffold_3G00229720
rosa_rugosa	Rorug07G0263100
rosa_samantha	Rh7AG416200 Rh7BG392200 Rh7CG435300 Rh7DG410700
rosa_wichuraiana	Rw7G034320 Rw7G034480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	257
AclWI	GGATC	1 cut(s)	110
AcsI	RAATTY	1 cut(s)	335
AcuI	CTGAAG	1 cut(s)	167
AdeI	CACNNNGTG	1 cut(s)	40
AfaI	GTAC	3 cut(s)	44, 170, 215
AjiI	CACGTC	1 cut(s)	37
AluBI	AGCT	3 cut(s)	65, 73, 227
AluI	AGCT	3 cut(s)	65, 73, 227
Alw21I	GWGCWC	1 cut(s)	229
Alw26I	GTCTC	2 cut(s)	284, 428
AlwI	GGATC	1 cut(s)	110
ApoI	RAATTY	1 cut(s)	335
Asp700I	GAANNNNTTC	1 cut(s)	74
AspLEI	GCGC	1 cut(s)	205
AsuC2I	CCSGG	2 cut(s)	159, 231
AsuHPI	GGTGA	1 cut(s)	299
BaeGI	GKGCMC	1 cut(s)	137
BanII	GRGCYC	1 cut(s)	229
Bbv12I	GWGCWC	1 cut(s)	229
BccI	CCATC	2 cut(s)	215, 259
BceAI	ACGGC	1 cut(s)	270
BclI	TGATCA	1 cut(s)	189
BcnI	CCSGG	2 cut(s)	159, 231
BcoDI	GTCTC	2 cut(s)	284, 428
BfmI	CTRYAG	1 cut(s)	207
Bme1390I	CCNGG	2 cut(s)	159, 231
BmgBI	CACGTC	1 cut(s)	37
BmrFI	CCNGG	2 cut(s)	159, 231
BmsI	GCATC	1 cut(s)	190
BpuMI	CCSGG	2 cut(s)	159, 231
BsaJI	CCNNGG	2 cut(s)	119, 342
BseDI	CCNNGG	2 cut(s)	119, 342
BseGI	GGATG	2 cut(s)	205, 243
BseMII	CTCAG	1 cut(s)	57
BseRI	GAGGAG	1 cut(s)	296
BseSI	GKGCMC	1 cut(s)	137
Bsh1285I	CGRYCG	1 cut(s)	235
BsiEI	CGRYCG	1 cut(s)	235
BsiHKAI	GWGCWC	1 cut(s)	229
BsiSI	CCGG	2 cut(s)	158, 231
BsmAI	GTCTC	2 cut(s)	284, 428
BsmBI	CGTCTC	1 cut(s)	428
Bsp1286I	GDGCHC	2 cut(s)	137, 229
Bsp143I	GATC	2 cut(s)	115, 189
BspACI	CCGC	1 cut(s)	257
BspCNI	CTCAG	1 cut(s)	58
BspHI	TCATGA	2 cut(s)	58, 307
BspPI	GGATC	1 cut(s)	110
BspQI	GCTCTTC	1 cut(s)	80
BssECI	CCNNGG	2 cut(s)	119, 342
BssMI	GATC	2 cut(s)	115, 189
BssT1I	CCWWGG	2 cut(s)	119, 342
Bst4CI	ACNGT	1 cut(s)	109
Bst6I	CTCTTC	2 cut(s)	80, 90
BstDEI	CTNAG	1 cut(s)	66
BstF5I	GGATG	2 cut(s)	205, 243
BstHHI	GCGC	1 cut(s)	205
BstKTI	GATC	2 cut(s)	118, 192
BstMAI	GTCTC	2 cut(s)	284, 428
BstMBI	GATC	2 cut(s)	115, 189
BstMCI	CGRYCG	1 cut(s)	235
BstMWI	GCNNNNNNNGC	1 cut(s)	79
BstSCI	CCNGG	2 cut(s)	157, 229
BstSFI	CTRYAG	1 cut(s)	207
BstSLI	GKGCMC	1 cut(s)	137
BtrI	CACGTC	1 cut(s)	37
BtsCI	GGATG	2 cut(s)	205, 243
CciI	TCATGA	2 cut(s)	58, 307
CfoI	GCGC	1 cut(s)	205
CseI	GACGC	1 cut(s)	151
Csp6I	GTAC	3 cut(s)	43, 169, 214
CviAII	CATG	5 cut(s)	59, 83, 175, 193, 308
CviJI	RGCY	3 cut(s)	65, 73, 227
CviKI_1	RGCY	3 cut(s)	65, 73, 227
CviQI	GTAC	3 cut(s)	43, 169, 214
DdeI	CTNAG	1 cut(s)	66
DpnI	GATC	2 cut(s)	117, 191
DpnII	GATC	2 cut(s)	115, 189
DraIII	CACNNNGTG	1 cut(s)	40
Eam1104I	CTCTTC	2 cut(s)	80, 90
EarI	CTCTTC	2 cut(s)	80, 90
Ecl136II	GAGCTC	1 cut(s)	227
Eco130I	CCWWGG	2 cut(s)	119, 342
Eco24I	GRGCYC	1 cut(s)	229
Eco53kI	GAGCTC	1 cut(s)	227
Eco57I	CTGAAG	1 cut(s)	167
EcoICRI	GAGCTC	1 cut(s)	227
EcoT14I	CCWWGG	2 cut(s)	119, 342
EcoT38I	GRGCYC	1 cut(s)	229
ErhI	CCWWGG	2 cut(s)	119, 342
Esp3I	CGTCTC	1 cut(s)	428
FaeI	CATG	5 cut(s)	62, 86, 178, 196, 311
FaiI	YATR	7 cut(s)	60, 84, 176, 194, 248, 250, 309
FatI	CATG	5 cut(s)	58, 82, 174, 192, 307
FauI	CCCGC	1 cut(s)	250
FbaI	TGATCA	1 cut(s)	189
FokI	GGATG	2 cut(s)	212, 250
FriOI	GRGCYC	1 cut(s)	229
GlaI	GCGC	1 cut(s)	204
HapII	CCGG	2 cut(s)	158, 231
HgaI	GACGC	1 cut(s)	151
HhaI	GCGC	1 cut(s)	205
Hin1II	CATG	5 cut(s)	62, 86, 178, 196, 311
Hin6I	GCGC	1 cut(s)	203
HinP1I	GCGC	1 cut(s)	203
HinfI	GANTC	3 cut(s)	26, 403, 409
HpaII	CCGG	2 cut(s)	158, 231
HphI	GGTGA	1 cut(s)	299
Hpy166II	GTNNAC	2 cut(s)	43, 169
Hpy188I	TCNGA	2 cut(s)	237, 408
Hpy188III	TCNNGA	2 cut(s)	59, 308
Hpy8I	GTNNAC	2 cut(s)	43, 169
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	2 cut(s)	85, 353
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	1 cut(s)	102
HpyF10VI	GCNNNNNNNGC	1 cut(s)	79
HpyF3I	CTNAG	1 cut(s)	66
HpySE526I	ACGT	1 cut(s)	36
Hsp92II	CATG	5 cut(s)	62, 86, 178, 196, 311
HspAI	GCGC	1 cut(s)	203
Ksp22I	TGATCA	1 cut(s)	189
Kzo9I	GATC	2 cut(s)	115, 189
LguI	GCTCTTC	1 cut(s)	80
LmnI	GCTCC	2 cut(s)	224, 232
LpnPI	CCDG	3 cut(s)	171, 195, 244
LweI	GCATC	1 cut(s)	190
MaeII	ACGT	1 cut(s)	36
MaeIII	GTNAC	1 cut(s)	410
MalI	GATC	2 cut(s)	117, 191
MboI	GATC	2 cut(s)	115, 189
MboII	GAAGA	3 cut(s)	67, 107, 160
MhlI	GDGCHC	2 cut(s)	137, 229
MluCI	AATT	1 cut(s)	335
MlyI	GAGTC	1 cut(s)	418
MmeI	TCCRAC	1 cut(s)	215
MnlI	CCTC	6 cut(s)	264, 274, 277, 322, 373, 378
MroXI	GAANNNNTTC	1 cut(s)	74
MspI	CCGG	2 cut(s)	158, 231
MspR9I	CCNGG	2 cut(s)	159, 231
MwoI	GCNNNNNNNGC	1 cut(s)	79
NciI	CCSGG	2 cut(s)	159, 231
NdeII	GATC	2 cut(s)	115, 189
NlaIII	CATG	5 cut(s)	62, 86, 178, 196, 311
NmeAIII	GCCGAG	1 cut(s)	405
NmuCI	GTSAC	1 cut(s)	410
PagI	TCATGA	2 cut(s)	58, 307
PciSI	GCTCTTC	1 cut(s)	80
PcsI	WCGNNNNNNNCGW	1 cut(s)	42
PdmI	GAANNNNTTC	1 cut(s)	74
PfeI	GAWTC	2 cut(s)	26, 403
PleI	GAGTC	1 cut(s)	417
PpsI	GAGTC	1 cut(s)	417
Psp124BI	GAGCTC	1 cut(s)	229
RsaI	GTAC	3 cut(s)	44, 170, 215
RsaNI	GTAC	3 cut(s)	43, 169, 214
SacI	GAGCTC	1 cut(s)	229
SapI	GCTCTTC	1 cut(s)	80
Sau3AI	GATC	2 cut(s)	115, 189
SchI	GAGTC	1 cut(s)	418
ScrFI	CCNGG	2 cut(s)	159, 231
SduI	GDGCHC	2 cut(s)	137, 229
SetI	ASST	5 cut(s)	39, 67, 75, 125, 229
SfaNI	GCATC	1 cut(s)	190
SfcI	CTRYAG	1 cut(s)	207
Sse9I	AATT	1 cut(s)	335
SsiI	CCGC	1 cut(s)	257
SstI	GAGCTC	1 cut(s)	229
StyD4I	CCNGG	2 cut(s)	157, 229
StyI	CCWWGG	2 cut(s)	119, 342
TaaI	ACNGT	1 cut(s)	109
TaiI	ACGT	1 cut(s)	39
TaqI	TCGA	2 cut(s)	78, 327
TasI	AATT	1 cut(s)	335
TfiI	GAWTC	2 cut(s)	26, 403
TseFI	GTSAC	1 cut(s)	410
Tsp45I	GTSAC	1 cut(s)	410
TspDTI	ATGAA	3 cut(s)	47, 75, 296
XapI	RAATTY	1 cut(s)	335
XmnI	GAANNNNTTC	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.