Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009914

Physical Location & Seq

Genomic Coordinates Reverse (-)

6258880 .. 6260259

Gene Structure 1380 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G09990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGAGGAATAAATCCCAATCATTCATCAGCTCAAAGCTTATATTCATTTGTTGCTCAATCTTGGTGTTGTTCATTCTCTTCTTGAAAAGAGCAAGCTTCTCTTCCAATTCAACCGCAACCATTCGAGACGAATATCACCAGAAATCGAAGTGCCCATCAACCCCACAACAATGCACCAAATTGCCCACTTCTCTATCCGACGCATTGGTTCACTATGTCACCTCAGAGATCACACCACAACAAACGTTTGATGAAGTCTCAGTCTCAAAGAGAGTCTTGGACAAGAAGTCTCCTTGTAACTTCCTCGTCTTTGGCTTAGGACACGATAGCTTGATGTGGGCATCTCTCAATCACGGTGGACGCACTTTGTTCCTCGAGGAAGATGAAGCTTGGATTGAGACAGTAACTAAGAAATTCCCAAACTTGGAATCCTACCACGTCGTATACGACACAAAAGTGAAAGATTCCAACAAGCTTATGGAGCTAAAGAGAACAGAGGATTGCAAAGCCGTGTCTGATCCTAGAGATTCCAAATGTGCTCTGTCTCTCAAGGGTTTTCCAGCTGACGTGTACGAGACGCAATGGGATGTGATAATGGTCGATGCTCCCACTGGTTACCACGATGAAGCTCCAGGGAGGATGAGCGCTATTTACACTGCGGGTTTATTGGCTCGTAACCGTTATGACGGTGGGGAGACTGATGTTTTCGTTCACGATATTAACCGGCCGGTGGAGGACGAGTTCTCGGTGGCGTTCTTGTGTGGAGGGTACATGAAAGAGCAGCAAGGAAGACTTAGGCATTTCAACATCCCTAGCCACCGGGCTAGCTTCGGTACACCGTTTTGTCCGGCGGATATCAGTCGCCGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006725 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009698 GO:0009808 GO:0009987 GO:0010383 GO:0010410 GO:0012505 GO:0016740 GO:0016741 GO:0019748 GO:0030775 GO:0032259 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0071554 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Polysacc_synt_4

Protein Analysis

290

Amino Acids

32.84

Weight (kDa)

6.75

Isoelectric Point (pI)

50.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IRX15_IRX15L_GXM	PF21729	85 - 268	1.4e-78	IRX15/IRX15L/GXM

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009914)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33800 AT4G09990
fragaria_vesca	FvH4_5g32940
malus_domestica	MD03G1203200.v1.1 MD08G1215400.v1.1 MD15G1399700.v1.1
prunus_persica	Prupe.1G547100_v2.0.a1
pyrus_communis	pycom15g35850
rosa_chinensis	RchiOBHm_Chr7g0230891
rosa_laevigata	RLG00000001452
rosa_multiflora	Rmu_co8000114.1_g000001 Rmu_sc0000483.1_g000011 Rmu_sc0000551.1_g000012
rosa_roxburghii	Rroxscaffold_3G00229720
rosa_rugosa	Rorug07G0263100
rosa_samantha	Rh7AG416200 Rh7BG392200 Rh7CG435300 Rh7DG410700
rosa_wichuraiana	Rw7G034320 Rw7G034480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	374
AccI	GTMKAC	1 cut(s)	444
AciI	CCGC	4 cut(s)	114, 659, 851, 865
AclI	AACGTT	1 cut(s)	245
AclWI	GGATC	1 cut(s)	512
AcoI	YGGCCR	1 cut(s)	725
AcsI	RAATTY	1 cut(s)	413
AfaI	GTAC	3 cut(s)	572, 770, 835
AfeI	AGCGCT	1 cut(s)	646
AfiI	CCNNNNNNNGG	2 cut(s)	424, 730
AflIII	ACRYGT	1 cut(s)	567
AgsI	TTSAA	3 cut(s)	85, 111, 805
AhdI	GACNNNNNGTC	1 cut(s)	286
AjiI	CACGTC	2 cut(s)	439, 568
AjnI	CCWGG	1 cut(s)	631
AleI	CACNNNNGTG	1 cut(s)	455
AloI	GAACNNNNNNTCC	2 cut(s)	725, 757
Alw21I	GWGCWC	1 cut(s)	541
Alw26I	GTCTC	8 cut(s)	120, 262, 268, 294, 392, 549, 569, 689
AlwI	GGATC	1 cut(s)	512
Ama87I	CYCGRG	1 cut(s)	374
Aor51HI	AGCGCT	1 cut(s)	646
AoxI	GGCC	1 cut(s)	725
ApeKI	GCWGC	1 cut(s)	781
ApoI	RAATTY	1 cut(s)	413
AspLEI	GCGC	1 cut(s)	647
AsuC2I	CCSGG	1 cut(s)	821
AsuHPI	GGTGA	2 cut(s)	128, 211
AsuNHI	GCTAGC	1 cut(s)	824
AvaI	CYCGRG	1 cut(s)	374
BaeGI	GKGCMC	1 cut(s)	155
BbsI	GAAGAC	1 cut(s)	796
Bbv12I	GWGCWC	1 cut(s)	541
BbvI	GCAGC	1 cut(s)	793
BccI	CCATC	1 cut(s)	163
BceAI	ACGGC	1 cut(s)	494
BciT130I	CCWGG	1 cut(s)	633
BcnI	CCSGG	1 cut(s)	821
BcoDI	GTCTC	8 cut(s)	120, 262, 268, 294, 392, 549, 569, 689
BfaI	CTAG	3 cut(s)	522, 813, 825
BfoI	RGCGCY	1 cut(s)	648
BisI	GCNGC	2 cut(s)	782, 865
BlsI	GCNGC	2 cut(s)	783, 866
Bme1390I	CCNGG	2 cut(s)	633, 821
BmeRI	GACNNNNNGTC	1 cut(s)	286
BmeT110I	CYCGRG	1 cut(s)	374
BmgBI	CACGTC	2 cut(s)	439, 568
BmrFI	CCNGG	2 cut(s)	633, 821
BmsI	GCATC	2 cut(s)	350, 592
BmtI	GCTAGC	1 cut(s)	828
BpiI	GAAGAC	1 cut(s)	796
BpmI	CTGGAG	1 cut(s)	615
Bpu10I	CCTNAGC	1 cut(s)	316
BpuEI	CTTGAG	1 cut(s)	533
BpuMI	CCSGG	1 cut(s)	821
BsaJI	CCNNGG	1 cut(s)	632
BsaXI	ACNNNNNCTCC	2 cut(s)	725, 755
Bsc4I	CCNNNNNNNGG	2 cut(s)	424, 730
Bse118I	RCCGGY	2 cut(s)	723, 727
Bse1I	ACTGG	1 cut(s)	616
Bse3DI	GCAATG	1 cut(s)	587
BseBI	CCWGG	1 cut(s)	633
BseDI	CCNNGG	1 cut(s)	632
BseGI	GGATG	3 cut(s)	592, 645, 807
BseLI	CCNNNNNNNGG	2 cut(s)	424, 730
BseMI	GCAATG	1 cut(s)	587
BseMII	CTCAG	2 cut(s)	237, 273
BseNI	ACTGG	1 cut(s)	616
BseSI	GKGCMC	1 cut(s)	155
BseX3I	CGGCCG	1 cut(s)	725
BseXI	GCAGC	1 cut(s)	793
Bsh1285I	CGRYCG	1 cut(s)	728
BshFI	GGCC	1 cut(s)	727
BsiEI	CGRYCG	1 cut(s)	728
BsiHKAI	GWGCWC	1 cut(s)	541
BsiHKCI	CYCGRG	1 cut(s)	374
BsiSI	CCGG	4 cut(s)	724, 728, 820, 848
BslI	CCNNNNNNNGG	2 cut(s)	424, 730
BsmAI	GTCTC	8 cut(s)	120, 262, 268, 294, 392, 549, 569, 689
BsmBI	CGTCTC	2 cut(s)	120, 569
BsnI	GGCC	1 cut(s)	727
BsoBI	CYCGRG	1 cut(s)	374
Bsp1286I	GDGCHC	2 cut(s)	155, 541
Bsp143I	GATC	2 cut(s)	228, 517
BspACI	CCGC	4 cut(s)	114, 659, 851, 865
BspANI	GGCC	1 cut(s)	727
BspCNI	CTCAG	2 cut(s)	236, 272
BspOI	GCTAGC	1 cut(s)	828
BspPI	GGATC	1 cut(s)	512
BsrDI	GCAATG	1 cut(s)	587
BsrFI	RCCGGY	2 cut(s)	723, 727
BsrI	ACTGG	1 cut(s)	616
BssAI	RCCGGY	2 cut(s)	723, 727
BssECI	CCNNGG	1 cut(s)	632
BssMI	GATC	2 cut(s)	228, 517
BssNAI	GTATAC	1 cut(s)	445
Bst1107I	GTATAC	1 cut(s)	445
Bst2UI	CCWGG	1 cut(s)	633
Bst4CI	ACNGT	5 cut(s)	356, 403, 680, 689, 840
Bst6I	CTCTTC	2 cut(s)	83, 106
BstC8I	GCNNGC	2 cut(s)	94, 826
BstDEI	CTNAG	5 cut(s)	223, 259, 316, 408, 794
BstEII	GGTNACC	1 cut(s)	614
BstF5I	GGATG	3 cut(s)	592, 645, 807
BstH2I	RGCGCY	1 cut(s)	648
BstHHI	GCGC	1 cut(s)	647
BstKTI	GATC	2 cut(s)	231, 520
BstMAI	GTCTC	8 cut(s)	120, 262, 268, 294, 392, 549, 569, 689
BstMBI	GATC	2 cut(s)	228, 517
BstMCI	CGRYCG	1 cut(s)	728
BstMWI	GCNNNNNNNGC	1 cut(s)	481
BstNI	CCWGG	1 cut(s)	633
BstPI	GGTNACC	1 cut(s)	614
BstSCI	CCNGG	2 cut(s)	631, 819
BstSLI	GKGCMC	1 cut(s)	155
BstV1I	GCAGC	1 cut(s)	793
BstV2I	GAAGAC	1 cut(s)	796
BstZ17I	GTATAC	1 cut(s)	445
BstZI	CGGCCG	1 cut(s)	725
BsuRI	GGCC	1 cut(s)	727
BtrI	CACGTC	2 cut(s)	439, 568
BtsCI	GGATG	3 cut(s)	592, 645, 807
BtsI	GCAGTG	1 cut(s)	654
BtsIMutI	CAGTG	2 cut(s)	609, 654
Cac8I	GCNNGC	2 cut(s)	94, 826
CfoI	GCGC	1 cut(s)	647
Cfr10I	RCCGGY	2 cut(s)	723, 727
CseI	GACGC	3 cut(s)	209, 369, 586
Csp6I	GTAC	3 cut(s)	571, 769, 834
CspCI	CAANNNNNGTGG	2 cut(s)	337, 372
CviAII	CATG	1 cut(s)	772
CviQI	GTAC	3 cut(s)	571, 769, 834
DdeI	CTNAG	5 cut(s)	223, 259, 316, 408, 794
DpnI	GATC	2 cut(s)	230, 519
DpnII	GATC	2 cut(s)	228, 517
DriI	GACNNNNNGTC	1 cut(s)	286
EaeI	YGGCCR	1 cut(s)	725
EagI	CGGCCG	1 cut(s)	725
Eam1104I	CTCTTC	2 cut(s)	83, 106
Eam1105I	GACNNNNNGTC	1 cut(s)	286
EarI	CTCTTC	2 cut(s)	83, 106
EciI	GGCGGA	1 cut(s)	866
EclXI	CGGCCG	1 cut(s)	725
Eco32I	GATATC	1 cut(s)	856
Eco47III	AGCGCT	1 cut(s)	646
Eco52I	CGGCCG	1 cut(s)	725
Eco88I	CYCGRG	1 cut(s)	374
Eco91I	GGTNACC	1 cut(s)	614
EcoO65I	GGTNACC	1 cut(s)	614
EcoRII	CCWGG	1 cut(s)	631
EcoRV	GATATC	1 cut(s)	856
Esp3I	CGTCTC	2 cut(s)	120, 569
FaeI	CATG	1 cut(s)	775
FaiI	YATR	6 cut(s)	41, 216, 445, 479, 684, 773
FalI	AAGNNNNNCTT	6 cut(s)	85, 117, 260, 292, 777, 809
FatI	CATG	1 cut(s)	771
FauI	CCCGC	1 cut(s)	652
FblI	GTMKAC	1 cut(s)	444
Fnu4HI	GCNGC	2 cut(s)	782, 865
FokI	GGATG	3 cut(s)	599, 652, 794
Fsp4HI	GCNGC	2 cut(s)	782, 865
FspBI	CTAG	3 cut(s)	522, 813, 825
GlaI	GCGC	1 cut(s)	646
GluI	GCNGC	2 cut(s)	782, 865
GsuI	CTGGAG	1 cut(s)	615
HaeII	RGCGCY	1 cut(s)	648
HaeIII	GGCC	1 cut(s)	727
HapII	CCGG	4 cut(s)	724, 728, 820, 848
HgaI	GACGC	3 cut(s)	209, 369, 586
HhaI	GCGC	1 cut(s)	647
Hin1II	CATG	1 cut(s)	775
Hin6I	GCGC	1 cut(s)	645
HinP1I	GCGC	1 cut(s)	645
HindIII	AAGCTT	4 cut(s)	35, 94, 387, 473
HinfI	GANTC	4 cut(s)	273, 428, 464, 527
HpaII	CCGG	4 cut(s)	724, 728, 820, 848
HphI	GGTGA	2 cut(s)	128, 211
Hpy166II	GTNNAC	6 cut(s)	211, 359, 445, 571, 712, 836
Hpy188I	TCNGA	3 cut(s)	199, 226, 517
Hpy188III	TCNNGA	3 cut(s)	82, 125, 713
Hpy8I	GTNNAC	6 cut(s)	211, 359, 445, 571, 712, 836
Hpy99I	CGWCG	2 cut(s)	203, 443
HpyCH4III	ACNGT	5 cut(s)	356, 403, 680, 689, 840
HpyCH4IV	ACGT	3 cut(s)	245, 438, 567
HpyCH4V	TGCA	2 cut(s)	174, 504
HpyF10VI	GCNNNNNNNGC	1 cut(s)	481
HpyF3I	CTNAG	5 cut(s)	223, 259, 316, 408, 794
HpySE526I	ACGT	3 cut(s)	245, 438, 567
Hsp92II	CATG	1 cut(s)	775
HspAI	GCGC	1 cut(s)	645
Kzo9I	GATC	2 cut(s)	228, 517
LmnI	GCTCC	3 cut(s)	481, 610, 634
LpnPI	CCDG	9 cut(s)	152, 573, 597, 618, 645, 737, 741, 833, 861
Lsp1109I	GCAGC	1 cut(s)	793
LweI	GCATC	2 cut(s)	350, 592
MaeI	CTAG	3 cut(s)	522, 813, 825
MaeII	ACGT	3 cut(s)	245, 438, 567
MaeIII	GTNAC	5 cut(s)	217, 296, 403, 614, 674
MalI	GATC	2 cut(s)	230, 519
MboI	GATC	2 cut(s)	228, 517
MboII	GAAGA	4 cut(s)	70, 93, 392, 801
MhlI	GDGCHC	2 cut(s)	155, 541
MluCI	AATT	3 cut(s)	106, 179, 413
MlyI	GAGTC	1 cut(s)	282
MmeI	TCCRAC	2 cut(s)	222, 492
MnlI	CCTC	8 cut(s)	232, 314, 370, 383, 490, 630, 727, 758
MseI	TTAA	1 cut(s)	720
MslI	CAYNNNNRTG	2 cut(s)	169, 455
MspA1I	CMGCKG	1 cut(s)	563
MspI	CCGG	4 cut(s)	724, 728, 820, 848
MspR9I	CCNGG	2 cut(s)	633, 821
MvaI	CCWGG	1 cut(s)	633
MwoI	GCNNNNNNNGC	1 cut(s)	481
NciI	CCSGG	1 cut(s)	821
NdeII	GATC	2 cut(s)	228, 517
NheI	GCTAGC	1 cut(s)	824
NlaIII	CATG	1 cut(s)	775
NmuCI	GTSAC	1 cut(s)	217
OliI	CACNNNNGTG	1 cut(s)	455
PaeR7I	CTCGAG	1 cut(s)	374
PcsI	WCGNNNNNNNCGW	1 cut(s)	444
PfeI	GAWTC	3 cut(s)	428, 464, 527
PkrI	GCNGC	2 cut(s)	783, 866
PleI	GAGTC	1 cut(s)	281
PpsI	GAGTC	1 cut(s)	281
Psp1406I	AACGTT	1 cut(s)	245
Psp6I	CCWGG	1 cut(s)	631
PspEI	GGTNACC	1 cut(s)	614
PspGI	CCWGG	1 cut(s)	631
PspXI	VCTCGAGB	1 cut(s)	374
PvuII	CAGCTG	1 cut(s)	563
RsaI	GTAC	3 cut(s)	572, 770, 835
RsaNI	GTAC	3 cut(s)	571, 769, 834
RseI	CAYNNNNRTG	2 cut(s)	169, 455
SaqAI	TTAA	1 cut(s)	720
SatI	GCNGC	2 cut(s)	782, 865
Sau3AI	GATC	2 cut(s)	228, 517
SchI	GAGTC	1 cut(s)	282
ScrFI	CCNGG	2 cut(s)	633, 821
SduI	GDGCHC	2 cut(s)	155, 541
SfaNI	GCATC	2 cut(s)	350, 592
Sfr274I	CTCGAG	1 cut(s)	374
SlaI	CTCGAG	1 cut(s)	374
SmiMI	CAYNNNNRTG	2 cut(s)	169, 455
SmlI	CTYRAG	2 cut(s)	374, 548
SmoI	CTYRAG	2 cut(s)	374, 548
Sse9I	AATT	3 cut(s)	106, 179, 413
SsiI	CCGC	4 cut(s)	114, 659, 851, 865
SspMI	CTAG	3 cut(s)	522, 813, 825
StyD4I	CCNGG	2 cut(s)	631, 819
TaaI	ACNGT	5 cut(s)	356, 403, 680, 689, 840
TaiI	ACGT	3 cut(s)	248, 441, 570
TaqI	TCGA	4 cut(s)	124, 146, 375, 600
TasI	AATT	3 cut(s)	106, 179, 413
TauI	GCSGC	1 cut(s)	867
TfiI	GAWTC	3 cut(s)	428, 464, 527
Tru1I	TTAA	1 cut(s)	720
Tru9I	TTAA	1 cut(s)	720
TscAI	CASTG	2 cut(s)	616, 661
TseFI	GTSAC	1 cut(s)	217
TseI	GCWGC	1 cut(s)	781
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	7 cut(s)	13, 34, 61, 267, 399, 639, 788
TspRI	CASTG	2 cut(s)	616, 661
XapI	RAATTY	1 cut(s)	413
XcmI	CCANNNNNNNNNTGG	1 cut(s)	475
XhoI	CTCGAG	1 cut(s)	374
XmiI	GTMKAC	1 cut(s)	444
XspI	CTAG	3 cut(s)	522, 813, 825

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.