Rorug07G0263100

Glucuronoxylan 4-O-methyltransferase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
24721983 .. 24724076
2094 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0263100.1

Sequence Viewer

Length: 2004 bp
ATGGCATCAAGCTCTAAAACAGCCTCTGCATCATCATCAGCTCATCAGTGGAAGTATGATGTATTTTTGAGTTTCAGGGGTGCTGACACTCGCAGGAGTATCGCATCCGACATATACGATGGACTGCAGAACAAGAGAGGAATTAAAACTTTCATGGATGATCAAGATCTTGAAGTAGGGGATGTTATTTCTCCCAGTCTCCTAACAGCAATTGAAGAATCAAGGTTTGCAATTGTGGTTTTCTCGCCAAACTATGCTTTTTCTACTTGGTGTTTGGAGGAACTTACAAAGATTTGTCAATGCATGGAAGACAACAGAATTCTTCCCCTTTTTTGTAATGTCAATCCTACTGATGTAAGATATCAGAAGATGACCATTAAAGATGCTTTCACCGAGCATGAAATCTCTGGGAAATACGAATCAAAGAAGTTGCAACAATGGAGAGATGCATTAAACAAGGTCGCCACTTTTTCTGGGTGGCATGCAGACAAGTTTAAGACTGATAGAGAACTTGTTGATGCCATTGTGGACTTTGTCTGCACTAAAGTCCTACCTACTACAACTGAGTCCACCGGGGATTTCACAGTATTTGAAGCAACAAGACAAGCCATGGATCAGCTTATGAAGGCATTAAAAGATAACAAGGTCACTGCCGTTGGGGTATACGGCATGGGGGGCGTTGGAAAGACAACCCTTGTGGAACAAGTCGGTCAAGAAGCTCGGAAGCAAGGCCTTTTTGATCGTGTGATTATGGTTACAGTTAATCAAACCCCTGATTTGAAAATAATTCAAGGCATATTGGCAGATAGGCTAGGCATCAAATTGATGAACGAGACAGATGAGGGAAGAGCTTCTAGATTGTATTCAGAGATAATGAGAAGAAACAAAACCCTTATAATCTTGGACAACGTTTGGGGTATAATAAACCTGACAAGCATAGGAATTCCCACCTACGACAATCTTCAAAGTTGCAACTCCAAAGTCCTACTTACCACAAGGAGACAGAATGTTTGTCATGCCATGGCAAGCCAAGAAAATATCATCCTCAATAGCCTATCGAAAGAAGATTCATGGACATTGTTTGTGAAATATGCAAGAATGTCTTTTGAATCAACCGATTTCGAGGATGTCGCAAGGAAGGTAGCTGGAGAATGTGGTGGTCTACCAGTTGCATTGATAGCAGTTGCAAGGGCACTTGGAGATAAAGACTTGACAGAATGGAAACACGCAGCTCAACGGCTAGAGAAGTCGCAAGTTGCCAACCGTGAAGATGAAGGAGTTGCATTCAAATGCATAAAATTAAGCTATGATTTCTTGAAAGATGAGGACTCCAAGTCATGCTTCTTGCTTTGTTGCCTATTCCCAGAAGACTATGACATCCAAATAGAAGACTTGTTCAAGTATGGGATCGGGAAAGGATTGTTTAAAGATGCTGCCACAATCCAAGAAGCCAGAGGAGAAGCTGATTTAGTGGCCAAGCACCTTATACATTCTAGCTTGCTTTTGGATAGTGAATATGATGGCTGTGTTAGGATGCATGATGTCATCCGGGATACAGCCATTCAAATTACACAATCTGAAGATGAGGATGGATTTCTGGTAAAAGCTGGCTGTGGTTTGAAGAATTGGCCATGTCGATTGCGTGAAGGCCACTCTGCAATTTCAGTCATGAAGAATGACATTCGCGAGCTACCTAAGGAGCTGGTATGTCCGAAACTCCAAATTTTATTACTACAAGAGAATGATGATTTAGATCAGATCCCTGATACTTTCTTCAAAAATACTAGCTCACTAAGAGTCATAGATCTTAGTTACACTAGTATATCATCCCTATCCAAGTCATTTATTCACCTAAGCAATCTGCAAGGTTTGCATTTAGATTCTTGCCAGAATATATCTGACATTTCCATACTGAAAAATTTTAAGAAGCTTGAGATTCTCAGTATGAAAGAATACCCTCTAAAGGAATTGTCAACAGAAATAGGAAATTTGACCAAGTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

667

Amino Acids

75.1

Weight (kDa)

5.47

Isoelectric Point (pI)

41.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 18 - 190 9.3e-46 TIR domain
TIR_2 PF13676 21 - 116 1.6e-15 TIR domain
NB-ARC PF00931 202 - 366 3.2e-31 NB-ARC domain
LRR_8 PF13855 571 - 630 2.2e-11 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 896
AccI GTMKAC 2 cut(s) 663, 1162
AccII CGCG 1 cut(s) 1686
AclI AACGTT 1 cut(s) 909
AclWI GGATC 3 cut(s) 621, 1415, 1753
AcoI YGGCCR 2 cut(s) 1473, 1628
AcsI RAATTY 5 cut(s) 318, 942, 1722, 1918, 1987
AcuI CTGAAG 1 cut(s) 1599
AfaI GTAC 1 cut(s) 2000
AfiI CCNNNNNNNGG 1 cut(s) 1963
AhdI GACNNNNNGTC 1 cut(s) 1333
AhlI ACTAGT 1 cut(s) 1817
AjuI GAANNNNNNNTTGG 2 cut(s) 1325, 1357
Alw26I GTCTC 3 cut(s) 203, 827, 994
AlwI GGATC 3 cut(s) 621, 1415, 1753
AlwNI CAGNNNCTG 1 cut(s) 26
AoxI GGCC 4 cut(s) 730, 1473, 1628, 1648
ApeKI GCWGC 2 cut(s) 1229, 1433
ApoI RAATTY 5 cut(s) 318, 942, 1722, 1918, 1987
ArsI GACNNNNNNTTYG 2 cut(s) 993, 1025
Asp700I GAANNNNTTC 1 cut(s) 850
AsuC2I CCSGG 2 cut(s) 574, 1550
AsuHPI GGTGA 2 cut(s) 382, 1841
AxyI CCTNAGG 1 cut(s) 1695
BaeGI GKGCMC 1 cut(s) 1195
BalI TGGCCA 2 cut(s) 1475, 1630
BbsI GAAGAC 3 cut(s) 315, 1374, 1395
BbvI GCAGC 2 cut(s) 1241, 1420
BccI CCATC 3 cut(s) 113, 1514, 1583
BceAI ACGGC 3 cut(s) 638, 682, 1253
BcgI CGANNNNNNTGC 2 cut(s) 82, 116
BciVI GTATCC 1 cut(s) 1546
BclI TGATCA 1 cut(s) 160
BcnI CCSGG 2 cut(s) 574, 1550
BcoDI GTCTC 3 cut(s) 203, 827, 994
BcuI ACTAGT 1 cut(s) 1817
BfaI CTAG 7 cut(s) 812, 855, 1241, 1494, 1785, 1818, 2002
BfmI CTRYAG 1 cut(s) 125
BfuI GTATCC 1 cut(s) 1546
BglII AGATCT 2 cut(s) 166, 1804
BisI GCNGC 2 cut(s) 1230, 1434
BlsI GCNGC 2 cut(s) 1231, 1435
BmcAI AGTACT 1 cut(s) 2000
Bme1390I CCNGG 2 cut(s) 574, 1550
BmeRI GACNNNNNGTC 1 cut(s) 1333
BmrFI CCNGG 2 cut(s) 574, 1550
BmrI ACTGGG 1 cut(s) 189
BmsI GCATC 9 cut(s) 14, 38, 113, 373, 436, 508, 825, 1420, 1524
BmuI ACTGGG 1 cut(s) 189
BpiI GAAGAC 3 cut(s) 315, 1374, 1395
BpmI CTGGAG 1 cut(s) 1167
Bpu10I CCTNAGC 1 cut(s) 1853
BpuEI CTTGAG 1 cut(s) 1952
BpuMI CCSGG 2 cut(s) 574, 1550
BsaBI GATNNNNATC 2 cut(s) 165, 1752
BsaJI CCNNGG 3 cut(s) 573, 609, 1020
Bsc4I CCNNNNNNNGG 1 cut(s) 1963
Bse1I ACTGG 2 cut(s) 195, 1166
Bse21I CCTNAGG 1 cut(s) 1695
Bse8I GATNNNNATC 2 cut(s) 165, 1752
BseDI CCNNGG 3 cut(s) 573, 609, 1020
BseJI GATNNNNATC 2 cut(s) 165, 1752
BseLI CCNNNNNNNGG 1 cut(s) 1963
BseMII CTCAG 2 cut(s) 555, 1954
BseNI ACTGG 2 cut(s) 195, 1166
BseRI GAGGAG 1 cut(s) 1470
BseSI GKGCMC 1 cut(s) 1195
BseXI GCAGC 2 cut(s) 1241, 1420
BsgI GTGCAG 1 cut(s) 523
Bsh1236I CGCG 1 cut(s) 1686
BshFI GGCC 4 cut(s) 732, 1475, 1630, 1650
BsiSI CCGG 2 cut(s) 573, 1549
BslI CCNNNNNNNGG 1 cut(s) 1963
BsmAI GTCTC 3 cut(s) 203, 827, 994
BsmI GAATGC 1 cut(s) 1283
BsnI GGCC 4 cut(s) 732, 1475, 1630, 1650
Bsp1286I GDGCHC 1 cut(s) 1195
Bsp143I GATC 8 cut(s) 160, 166, 613, 739, 1407, 1753, 1758, 1804
Bsp19I CCATGG 2 cut(s) 609, 1020
Bsp68I TCGCGA 1 cut(s) 1686
BspANI GGCC 4 cut(s) 732, 1475, 1630, 1650
BspCNI CTCAG 2 cut(s) 556, 1953
BspFNI CGCG 1 cut(s) 1686
BspHI TCATGA 1 cut(s) 1668
BspMAI CTGCAG 1 cut(s) 129
BspPI GGATC 3 cut(s) 621, 1415, 1753
BspQI GCTCTTC 1 cut(s) 841
BsrI ACTGG 2 cut(s) 195, 1166
BssECI CCNNGG 3 cut(s) 573, 609, 1020
BssMI GATC 8 cut(s) 160, 166, 613, 739, 1407, 1753, 1758, 1804
BssNAI GTATAC 1 cut(s) 664
BssT1I CCWWGG 2 cut(s) 609, 1020
Bst1107I GTATAC 1 cut(s) 664
Bst4CI ACNGT 3 cut(s) 586, 760, 1265
Bst6I CTCTTC 1 cut(s) 841
BstAPI GCANNNNNTGC 1 cut(s) 1870
BstC8I GCNNGC 5 cut(s) 483, 1027, 1499, 1609, 1688
BstDEI CTNAG 6 cut(s) 564, 1695, 1793, 1808, 1853, 1940
BstDSI CCRYGG 2 cut(s) 609, 1020
BstFNI CGCG 1 cut(s) 1686
BstKTI GATC 8 cut(s) 163, 169, 616, 742, 1410, 1756, 1761, 1807
BstMAI GTCTC 3 cut(s) 203, 827, 994
BstMBI GATC 8 cut(s) 160, 166, 613, 739, 1407, 1753, 1758, 1804
BstMWI GCNNNNNNNGC 3 cut(s) 675, 1178, 1870
BstNSI RCATGY 1 cut(s) 485
BstSCI CCNGG 2 cut(s) 572, 1548
BstSFI CTRYAG 1 cut(s) 125
BstSLI GKGCMC 1 cut(s) 1195
BstUI CGCG 1 cut(s) 1686
BstV1I GCAGC 2 cut(s) 1241, 1420
BstV2I GAAGAC 3 cut(s) 315, 1374, 1395
BstX2I RGATCY 3 cut(s) 166, 1758, 1804
BstYI RGATCY 3 cut(s) 166, 1758, 1804
BstZ17I GTATAC 1 cut(s) 664
Bsu36I CCTNAGG 1 cut(s) 1695
BsuI GTATCC 1 cut(s) 1546
BsuRI GGCC 4 cut(s) 732, 1475, 1630, 1650
BtgI CCRYGG 2 cut(s) 609, 1020
BtsI GCAGTG 1 cut(s) 648
BtsIMutI CAGTG 2 cut(s) 53, 648
BtuMI TCGCGA 1 cut(s) 1686
Cac8I GCNNGC 5 cut(s) 483, 1027, 1499, 1609, 1688
CaiI CAGNNNCTG 1 cut(s) 26
CciI TCATGA 1 cut(s) 1668
Csp6I GTAC 1 cut(s) 1999
CspCI CAANNNNNGTGG 2 cut(s) 678, 713
CviQI GTAC 1 cut(s) 1999
DdeI CTNAG 6 cut(s) 564, 1695, 1793, 1808, 1853, 1940
DpnI GATC 8 cut(s) 162, 168, 615, 741, 1409, 1755, 1760, 1806
DpnII GATC 8 cut(s) 160, 166, 613, 739, 1407, 1753, 1758, 1804
DraI TTTAAA 1 cut(s) 1426
DriI GACNNNNNGTC 1 cut(s) 1333
EaeI YGGCCR 2 cut(s) 1473, 1628
Eam1104I CTCTTC 1 cut(s) 841
Eam1105I GACNNNNNGTC 1 cut(s) 1333
EarI CTCTTC 1 cut(s) 841
Eco130I CCWWGG 2 cut(s) 609, 1020
Eco147I AGGCCT 1 cut(s) 732
Eco32I GATATC 1 cut(s) 362
Eco57I CTGAAG 1 cut(s) 1599
Eco81I CCTNAGG 1 cut(s) 1695
EcoRI GAATTC 2 cut(s) 318, 942
EcoRV GATATC 1 cut(s) 362
EcoT14I CCWWGG 2 cut(s) 609, 1020
EcoT22I ATGCAT 4 cut(s) 305, 451, 1295, 1539
ErhI CCWWGG 2 cut(s) 609, 1020
FalI AAGNNNNNCTT 6 cut(s) 972, 1004, 1087, 1119, 1325, 1357
FbaI TGATCA 1 cut(s) 160
FblI GTMKAC 2 cut(s) 663, 1162
Fnu4HI GCNGC 2 cut(s) 1230, 1434
Fsp4HI GCNGC 2 cut(s) 1230, 1434
FspBI CTAG 7 cut(s) 812, 855, 1241, 1494, 1785, 1818, 2002
GluI GCNGC 2 cut(s) 1230, 1434
GsuI CTGGAG 1 cut(s) 1167
HaeIII GGCC 4 cut(s) 732, 1475, 1630, 1650
HapII CCGG 2 cut(s) 573, 1549
HincII GTYRAC 1 cut(s) 1974
HindII GTYRAC 1 cut(s) 1974
HindIII AAGCTT 1 cut(s) 1928
HinfI GANTC 9 cut(s) 218, 419, 566, 1067, 1109, 1328, 1797, 1880, 1936
HpaII CCGG 2 cut(s) 573, 1549
HphI GGTGA 2 cut(s) 382, 1841
Hpy166II GTNNAC 5 cut(s) 529, 570, 664, 1163, 1974
Hpy188I TCNGA 8 cut(s) 109, 366, 723, 868, 1579, 1713, 1758, 1900
Hpy188III TCNNGA 8 cut(s) 164, 170, 713, 855, 1315, 1411, 1669, 1685
Hpy8I GTNNAC 5 cut(s) 529, 570, 664, 1163, 1974
HpyAV CCTTC 4 cut(s) 619, 1132, 1268, 1640
HpyCH4III ACNGT 3 cut(s) 586, 760, 1265
HpyCH4IV ACGT 1 cut(s) 909
HpyF10VI GCNNNNNNNGC 3 cut(s) 675, 1178, 1870
HpyF3I CTNAG 6 cut(s) 564, 1695, 1793, 1808, 1853, 1940
HpySE526I ACGT 1 cut(s) 909
Ksp22I TGATCA 1 cut(s) 160
Kzo9I GATC 8 cut(s) 160, 166, 613, 739, 1407, 1753, 1758, 1804
LguI GCTCTTC 1 cut(s) 841
LmnI GCTCC 1 cut(s) 1699
Lsp1109I GCAGC 2 cut(s) 1241, 1420
LweI GCATC 9 cut(s) 14, 38, 113, 373, 436, 508, 825, 1420, 1524
MaeI CTAG 7 cut(s) 812, 855, 1241, 1494, 1785, 1818, 2002
MaeII ACGT 1 cut(s) 909
MaeIII GTNAC 3 cut(s) 646, 754, 1811
MalI GATC 8 cut(s) 162, 168, 615, 741, 1409, 1755, 1760, 1806
MboI GATC 8 cut(s) 160, 166, 613, 739, 1407, 1753, 1758, 1804
MfeI CAATTG 2 cut(s) 210, 231
MflI RGATCY 3 cut(s) 166, 1758, 1804
MhlI GDGCHC 1 cut(s) 1195
MlsI TGGCCA 2 cut(s) 1475, 1630
MluNI TGGCCA 2 cut(s) 1475, 1630
MlyI GAGTC 3 cut(s) 575, 1322, 1806
MmeI TCCRAC 2 cut(s) 132, 661
Mox20I TGGCCA 2 cut(s) 1475, 1630
Mph1103I ATGCAT 4 cut(s) 305, 451, 1295, 1539
MroXI GAANNNNTTC 1 cut(s) 850
MscI TGGCCA 2 cut(s) 1475, 1630
MseI TTAA 9 cut(s) 144, 378, 452, 495, 632, 762, 1301, 1425, 1923
MslI CAYNNNNRTG 1 cut(s) 1288
Msp20I TGGCCA 2 cut(s) 1475, 1630
MspI CCGG 2 cut(s) 573, 1549
MspR9I CCNGG 2 cut(s) 574, 1550
MunI CAATTG 2 cut(s) 210, 231
Mva1269I GAATGC 1 cut(s) 1283
MvnI CGCG 1 cut(s) 1686
MwoI GCNNNNNNNGC 3 cut(s) 675, 1178, 1870
NciI CCSGG 2 cut(s) 574, 1550
NcoI CCATGG 2 cut(s) 609, 1020
NdeII GATC 8 cut(s) 160, 166, 613, 739, 1407, 1753, 1758, 1804
NmuCI GTSAC 1 cut(s) 646
NruI TCGCGA 1 cut(s) 1686
NsiI ATGCAT 4 cut(s) 305, 451, 1295, 1539
NspI RCATGY 1 cut(s) 485
PaeI GCATGC 1 cut(s) 485
PagI TCATGA 1 cut(s) 1668
PceI AGGCCT 1 cut(s) 732
PciSI GCTCTTC 1 cut(s) 841
PctI GAATGC 1 cut(s) 1283
PdmI GAANNNNTTC 1 cut(s) 850
PfeI GAWTC 6 cut(s) 218, 419, 1067, 1109, 1880, 1936
PflFI GACNNNGTC 1 cut(s) 533
PfoI TCCNGGA 1 cut(s) 1548
PkrI GCNGC 2 cut(s) 1231, 1435
PleI GAGTC 3 cut(s) 574, 1322, 1805
PpsI GAGTC 3 cut(s) 574, 1322, 1805
PsiI TTATAA 1 cut(s) 896
Psp1406I AACGTT 1 cut(s) 909
PstI CTGCAG 1 cut(s) 129
PstNI CAGNNNCTG 1 cut(s) 26
PsuI RGATCY 3 cut(s) 166, 1758, 1804
PsyI GACNNNGTC 1 cut(s) 533
RruI TCGCGA 1 cut(s) 1686
RsaI GTAC 1 cut(s) 2000
RsaNI GTAC 1 cut(s) 1999
RseI CAYNNNNRTG 1 cut(s) 1288
SapI GCTCTTC 1 cut(s) 841
SaqAI TTAA 9 cut(s) 144, 378, 452, 495, 632, 762, 1301, 1425, 1923
SatI GCNGC 2 cut(s) 1230, 1434
Sau3AI GATC 8 cut(s) 160, 166, 613, 739, 1407, 1753, 1758, 1804
ScaI AGTACT 1 cut(s) 2000
SchI GAGTC 3 cut(s) 575, 1322, 1806
ScrFI CCNGG 2 cut(s) 574, 1550
SduI GDGCHC 1 cut(s) 1195
SfaNI GCATC 9 cut(s) 14, 38, 113, 373, 436, 508, 825, 1420, 1524
SfcI CTRYAG 1 cut(s) 125
SmiMI CAYNNNNRTG 1 cut(s) 1288
SmlI CTYRAG 1 cut(s) 1931
SmoI CTYRAG 1 cut(s) 1931
SpeI ACTAGT 1 cut(s) 1817
SphI GCATGC 1 cut(s) 485
SseBI AGGCCT 1 cut(s) 732
SspMI CTAG 7 cut(s) 812, 855, 1241, 1494, 1785, 1818, 2002
StuI AGGCCT 1 cut(s) 732
StyD4I CCNGG 2 cut(s) 572, 1548
StyI CCWWGG 2 cut(s) 609, 1020
TaaI ACNGT 3 cut(s) 586, 760, 1265
TaiI ACGT 1 cut(s) 912
TaqI TCGA 3 cut(s) 1058, 1122, 1636
TaqII GACCGA 1 cut(s) 698
TatI WGTACW 1 cut(s) 1998
TfiI GAWTC 6 cut(s) 218, 419, 1067, 1109, 1880, 1936
Tru1I TTAA 9 cut(s) 144, 378, 452, 495, 632, 762, 1301, 1425, 1923
Tru9I TTAA 9 cut(s) 144, 378, 452, 495, 632, 762, 1301, 1425, 1923
TscAI CASTG 2 cut(s) 53, 655
TseFI GTSAC 1 cut(s) 646
TseI GCWGC 2 cut(s) 1229, 1433
Tsp45I GTSAC 1 cut(s) 646
TspDTI ATGAA 8 cut(s) 142, 414, 638, 842, 1059, 1287, 1685, 1961
TspRI CASTG 2 cut(s) 53, 655
Tth111I GACNNNGTC 1 cut(s) 533
XapI RAATTY 5 cut(s) 318, 942, 1722, 1918, 1987
XbaI TCTAGA 1 cut(s) 854
XceI RCATGY 1 cut(s) 485
XmiI GTMKAC 2 cut(s) 663, 1162
XmnI GAANNNNTTC 1 cut(s) 850
XspI CTAG 7 cut(s) 812, 855, 1241, 1494, 1785, 1818, 2002
ZrmI AGTACT 1 cut(s) 2000
Zsp2I ATGCAT 4 cut(s) 305, 451, 1295, 1539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.