RLG00000001452

Glucuronoxylan 4-O-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0009914
Physical Location & Seq
Reverse (-)
15753701 .. 15754603
903 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001452

Sequence Viewer

Length: 903 bp
ATGAGGTCCAAGCCTCAGTGTGGCATTAATCTCAAGCTCATTGTCCTCTTCTGCTCCTTTCTCCTCCTCTTCCTTATCTTAATACTGAGATCAAACCTCTCATCTCCTCTGAAAACCCCATCTTCATCATCCACCACGATCTCAGAAACCCACCTTTCAAATTCAACTACCGATCAACCTCAAGTCCCAAAATGCCCATCACTTGAAGTACCCTTCATTCCCACATGCACAAAAACCCCACCTTCCTTAGCCAATGCCCTCATCCACTACGCCACCACAAACATCACCCCACAGCAAACCTTCAAAGAAATATCAGTATCAGCAAGGATCTTAGCCAAGAAGGCGCCCTGCAACTTCCTCGTCTTCGGCTTAGGCCTTGACAGCCTCATGTGGGCAGCTCTCAACCACGGCGGCCGCACCGTTTTCCTAGAAGAGGACCAGTCCTGGATCGACCAGATCAAAGAACGACTACCCAACTTGGAATCCTACCACGTCGTGTACGACACCAAAGTTCATGAAGCTGAGAAGCTCTTAGAGCATGGCACGAAGGAAGAGTGCAAGACCGTGAGCGATCCAAGGTTTTCCAAGTGCCCATTGGCGCTGAAGAACTTGCCGGGAGATGTGTACGACATGGAATGGGATTTGATCATGGTGGATGCGCCTACAGGGTACTTTGATGGAGCTCCTGGTCGGATGAGTGCTATATACACGGCGGGTTTGATGGGGAGGAACAGAGAGGAGGGTGAGACTGATGTATTTGTTCATGATGTAGATAGAGTGGTCGAGGATAAATTTTCCAAGGCTTTTCTTTGTGAAGGGTATTTGAGAGAACAAGAGGGGAGGATTAGGCATTTTACGATTCCGAGTCACAGGACTCGTCTGGGCAGACCATTTTGCCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Polysacc_synt_4

Protein Analysis

301

Amino Acids

33.7

Weight (kDa)

6.51

Isoelectric Point (pI)

44.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IRX15_IRX15L_GXM PF21729 102 - 285 8.1e-79 IRX15/IRX15L/GXM
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 343
AciI CCGC 3 cut(s) 411, 415, 713
AclWI GGATC 3 cut(s) 335, 455, 566
AcoI YGGCCR 1 cut(s) 412
AcsI RAATTY 2 cut(s) 160, 791
AcuI CTGAAG 1 cut(s) 623
AcyI GRCGYC 1 cut(s) 344
AdeI CACNNNGTG 1 cut(s) 496
AfaI GTAC 4 cut(s) 210, 500, 626, 671
AfiI CCNNNNNNNGG 3 cut(s) 20, 391, 433
AgsI TTSAA 4 cut(s) 159, 165, 206, 304
AjiI CACGTC 1 cut(s) 493
AjnI CCWGG 2 cut(s) 443, 685
AluBI AGCT 5 cut(s) 37, 398, 521, 529, 683
AluI AGCT 5 cut(s) 37, 398, 521, 529, 683
Alw21I GWGCWC 1 cut(s) 685
Alw26I GTCTC 1 cut(s) 740
AlwI GGATC 3 cut(s) 335, 455, 566
AoxI GGCC 2 cut(s) 373, 412
ApeKI GCWGC 1 cut(s) 395
ApoI RAATTY 2 cut(s) 160, 791
AseI ATTAAT 1 cut(s) 27
AspLEI GCGC 3 cut(s) 346, 601, 661
AspS9I GGNCC 2 cut(s) 6, 436
AsuC2I CCSGG 1 cut(s) 615
AsuHPI GGTGA 2 cut(s) 277, 755
AvaII GGWCC 2 cut(s) 6, 436
BaeGI GKGCMC 1 cut(s) 593
BanI GGYRCC 1 cut(s) 343
BanII GRGCYC 1 cut(s) 685
BbsI GAAGAC 1 cut(s) 355
Bbv12I GWGCWC 1 cut(s) 685
BbvI GCAGC 1 cut(s) 407
BccI CCATC 4 cut(s) 127, 205, 671, 715
BceAI ACGGC 2 cut(s) 424, 726
BcgI CGANNNNNNTGC 2 cut(s) 340, 374
BciT130I CCWGG 2 cut(s) 445, 687
BclI TGATCA 1 cut(s) 645
BcnI CCSGG 1 cut(s) 615
BcoDI GTCTC 1 cut(s) 740
BfaI CTAG 1 cut(s) 428
BfmI CTRYAG 1 cut(s) 663
BfoI RGCGCY 2 cut(s) 347, 602
BglI GCCNNNNNGGC 1 cut(s) 341
BisI GCNGC 3 cut(s) 396, 412, 415
BlsI GCNGC 3 cut(s) 397, 413, 416
Bme1390I CCNGG 3 cut(s) 445, 615, 687
Bme18I GGWCC 2 cut(s) 6, 436
BmgBI CACGTC 1 cut(s) 493
BmgT120I GGNCC 2 cut(s) 6, 436
BmiI GGNNCC 1 cut(s) 345
BmrFI CCNGG 3 cut(s) 445, 615, 687
BmsI GCATC 1 cut(s) 646
BpiI GAAGAC 1 cut(s) 355
Bpu10I CCTNAGC 2 cut(s) 247, 370
BpuEI CTTGAG 2 cut(s) 17, 165
BpuMI CCSGG 1 cut(s) 615
BsaHI GRCGYC 1 cut(s) 344
BsaJI CCNNGG 3 cut(s) 406, 575, 798
Bsc4I CCNNNNNNNGG 3 cut(s) 20, 391, 433
Bse1I ACTGG 1 cut(s) 439
BseBI CCWGG 2 cut(s) 445, 687
BseDI CCNNGG 3 cut(s) 406, 575, 798
BseGI GGATG 4 cut(s) 128, 261, 661, 699
BseLI CCNNNNNNNGG 3 cut(s) 20, 391, 433
BseMII CTCAG 4 cut(s) 29, 77, 156, 513
BseNI ACTGG 1 cut(s) 439
BseRI GAGGAG 4 cut(s) 53, 56, 96, 752
BseSI GKGCMC 1 cut(s) 593
BseX3I CGGCCG 1 cut(s) 412
BseXI GCAGC 1 cut(s) 407
Bsh1285I CGRYCG 1 cut(s) 415
BshFI GGCC 2 cut(s) 375, 414
BshNI GGYRCC 1 cut(s) 343
BsiEI CGRYCG 1 cut(s) 415
BsiHKAI GWGCWC 1 cut(s) 685
BsiSI CCGG 1 cut(s) 614
BslFI GGGAC 1 cut(s) 170
BslI CCNNNNNNNGG 3 cut(s) 20, 391, 433
BsmAI GTCTC 1 cut(s) 740
BsmFI GGGAC 1 cut(s) 170
BsnI GGCC 2 cut(s) 375, 414
Bsp1286I GDGCHC 2 cut(s) 593, 685
Bsp143I GATC 8 cut(s) 89, 138, 172, 327, 447, 456, 571, 645
BspACI CCGC 3 cut(s) 411, 415, 713
BspANI GGCC 2 cut(s) 375, 414
BspCNI CTCAG 4 cut(s) 28, 78, 155, 514
BspHI TCATGA 2 cut(s) 514, 763
BspLI GGNNCC 1 cut(s) 345
BspPI GGATC 3 cut(s) 335, 455, 566
BspT107I GGYRCC 1 cut(s) 343
BsrI ACTGG 1 cut(s) 439
BssECI CCNNGG 3 cut(s) 406, 575, 798
BssMI GATC 8 cut(s) 89, 138, 172, 327, 447, 456, 571, 645
BssNI GRCGYC 1 cut(s) 344
BssT1I CCWWGG 2 cut(s) 575, 798
Bst2UI CCWGG 2 cut(s) 445, 687
Bst4CI ACNGT 2 cut(s) 421, 565
Bst6I CTCTTC 4 cut(s) 53, 74, 426, 546
BstACI GRCGYC 1 cut(s) 344
BstDEI CTNAG 8 cut(s) 15, 86, 142, 247, 331, 370, 522, 532
BstDSI CCRYGG 1 cut(s) 406
BstENI CCTNNNNNAGG 1 cut(s) 431
BstF5I GGATG 4 cut(s) 128, 261, 661, 699
BstH2I RGCGCY 2 cut(s) 347, 602
BstHHI GCGC 3 cut(s) 346, 601, 661
BstKTI GATC 8 cut(s) 92, 141, 175, 330, 450, 459, 574, 648
BstMAI GTCTC 1 cut(s) 740
BstMBI GATC 8 cut(s) 89, 138, 172, 327, 447, 456, 571, 645
BstMCI CGRYCG 1 cut(s) 415
BstMWI GCNNNNNNNGC 3 cut(s) 341, 381, 535
BstNI CCWGG 2 cut(s) 445, 687
BstNSI RCATGY 1 cut(s) 228
BstSCI CCNGG 3 cut(s) 443, 613, 685
BstSFI CTRYAG 1 cut(s) 663
BstSLI GKGCMC 1 cut(s) 593
BstV1I GCAGC 1 cut(s) 407
BstV2I GAAGAC 1 cut(s) 355
BstX2I RGATCY 1 cut(s) 327
BstYI RGATCY 1 cut(s) 327
BstZI CGGCCG 1 cut(s) 412
BsuRI GGCC 2 cut(s) 375, 414
BtgI CCRYGG 1 cut(s) 406
BtrI CACGTC 1 cut(s) 493
BtsCI GGATG 4 cut(s) 128, 261, 661, 699
BtsIMutI CAGTG 1 cut(s) 23
CciI TCATGA 2 cut(s) 514, 763
CciNI GCGGCCGC 1 cut(s) 412
CfoI GCGC 3 cut(s) 346, 601, 661
Cfr13I GGNCC 2 cut(s) 6, 436
Csp6I GTAC 4 cut(s) 209, 499, 625, 670
CviAII CATG 7 cut(s) 225, 388, 515, 539, 631, 649, 764
CviQI GTAC 4 cut(s) 209, 499, 625, 670
DdeI CTNAG 8 cut(s) 15, 86, 142, 247, 331, 370, 522, 532
DinI GGCGCC 1 cut(s) 345
DpnI GATC 8 cut(s) 91, 140, 174, 329, 449, 458, 573, 647
DpnII GATC 8 cut(s) 89, 138, 172, 327, 447, 456, 571, 645
DraIII CACNNNGTG 1 cut(s) 496
EaeI YGGCCR 1 cut(s) 412
EagI CGGCCG 1 cut(s) 412
Eam1104I CTCTTC 4 cut(s) 53, 74, 426, 546
EarI CTCTTC 4 cut(s) 53, 74, 426, 546
Ecl136II GAGCTC 1 cut(s) 683
EclXI CGGCCG 1 cut(s) 412
Eco130I CCWWGG 2 cut(s) 575, 798
Eco147I AGGCCT 1 cut(s) 375
Eco24I GRGCYC 1 cut(s) 685
Eco47I GGWCC 2 cut(s) 6, 436
Eco52I CGGCCG 1 cut(s) 412
Eco53kI GAGCTC 1 cut(s) 683
Eco57I CTGAAG 1 cut(s) 623
EcoICRI GAGCTC 1 cut(s) 683
EcoNI CCTNNNNNAGG 1 cut(s) 431
EcoRII CCWGG 2 cut(s) 443, 685
EcoT14I CCWWGG 2 cut(s) 575, 798
EcoT38I GRGCYC 1 cut(s) 685
EgeI GGCGCC 1 cut(s) 345
EheI GGCGCC 1 cut(s) 345
ErhI CCWWGG 2 cut(s) 575, 798
FaeI CATG 7 cut(s) 228, 391, 518, 542, 634, 652, 767
FaiI YATR 9 cut(s) 226, 389, 516, 540, 632, 650, 704, 706, 765
FaqI GGGAC 1 cut(s) 170
FatI CATG 7 cut(s) 224, 387, 514, 538, 630, 648, 763
FauI CCCGC 1 cut(s) 706
FbaI TGATCA 1 cut(s) 645
Fnu4HI GCNGC 3 cut(s) 396, 412, 415
FokI GGATG 4 cut(s) 115, 248, 668, 706
FriOI GRGCYC 1 cut(s) 685
Fsp4HI GCNGC 3 cut(s) 396, 412, 415
FspBI CTAG 1 cut(s) 428
GlaI GCGC 3 cut(s) 345, 600, 660
GluI GCNGC 3 cut(s) 396, 412, 415
HaeII RGCGCY 2 cut(s) 347, 602
HaeIII GGCC 2 cut(s) 375, 414
HapII CCGG 1 cut(s) 614
HhaI GCGC 3 cut(s) 346, 601, 661
Hin1I GRCGYC 1 cut(s) 344
Hin1II CATG 7 cut(s) 228, 391, 518, 542, 634, 652, 767
Hin6I GCGC 3 cut(s) 344, 599, 659
HinP1I GCGC 3 cut(s) 344, 599, 659
HinfI GANTC 4 cut(s) 482, 859, 865, 874
HpaII CCGG 1 cut(s) 614
HphI GGTGA 2 cut(s) 277, 755
Hpy166II GTNNAC 2 cut(s) 499, 625
Hpy188I TCNGA 4 cut(s) 111, 145, 693, 864
Hpy188III TCNNGA 2 cut(s) 515, 764
Hpy8I GTNNAC 2 cut(s) 499, 625
Hpy99I CGWCG 1 cut(s) 497
HpyAV CCTTC 6 cut(s) 223, 252, 310, 334, 541, 809
HpyCH4III ACNGT 2 cut(s) 421, 565
HpyCH4IV ACGT 1 cut(s) 492
HpyCH4V TGCA 3 cut(s) 228, 351, 558
HpyF10VI GCNNNNNNNGC 3 cut(s) 341, 381, 535
HpyF3I CTNAG 8 cut(s) 15, 86, 142, 247, 331, 370, 522, 532
HpySE526I ACGT 1 cut(s) 492
Hsp92I GRCGYC 1 cut(s) 344
Hsp92II CATG 7 cut(s) 228, 391, 518, 542, 634, 652, 767
HspAI GCGC 3 cut(s) 344, 599, 659
KasI GGCGCC 1 cut(s) 343
Ksp22I TGATCA 1 cut(s) 645
Kzo9I GATC 8 cut(s) 89, 138, 172, 327, 447, 456, 571, 645
LmnI GCTCC 3 cut(s) 59, 680, 688
Lsp1109I GCAGC 1 cut(s) 407
LweI GCATC 1 cut(s) 646
MaeI CTAG 1 cut(s) 428
MaeII ACGT 1 cut(s) 492
MaeIII GTNAC 1 cut(s) 866
MalI GATC 8 cut(s) 91, 140, 174, 329, 449, 458, 573, 647
MboI GATC 8 cut(s) 89, 138, 172, 327, 447, 456, 571, 645
MboII GAAGA 7 cut(s) 40, 61, 114, 355, 443, 563, 616
MflI RGATCY 1 cut(s) 327
MhlI GDGCHC 2 cut(s) 593, 685
MluCI AATT 2 cut(s) 160, 791
Mly113I GGCGCC 1 cut(s) 344
MlyI GAGTC 2 cut(s) 868, 874
MmeI TCCRAC 1 cut(s) 671
MseI TTAA 2 cut(s) 27, 80
MspI CCGG 1 cut(s) 614
MspR9I CCNGG 3 cut(s) 445, 615, 687
MvaI CCWGG 2 cut(s) 445, 687
MwoI GCNNNNNNNGC 3 cut(s) 341, 381, 535
NarI GGCGCC 1 cut(s) 344
NciI CCSGG 1 cut(s) 615
NdeII GATC 8 cut(s) 89, 138, 172, 327, 447, 456, 571, 645
NlaIII CATG 7 cut(s) 228, 391, 518, 542, 634, 652, 767
NlaIV GGNNCC 1 cut(s) 345
NmuCI GTSAC 1 cut(s) 866
NotI GCGGCCGC 1 cut(s) 412
NspI RCATGY 1 cut(s) 228
PagI TCATGA 2 cut(s) 514, 763
PceI AGGCCT 1 cut(s) 375
PcsI WCGNNNNNNNCGW 1 cut(s) 498
PfeI GAWTC 2 cut(s) 482, 859
PfoI TCCNGGA 1 cut(s) 443
PkrI GCNGC 3 cut(s) 397, 413, 416
PleI GAGTC 2 cut(s) 868, 873
PluTI GGCGCC 1 cut(s) 347
PpsI GAGTC 2 cut(s) 868, 873
PshBI ATTAAT 1 cut(s) 27
Psp124BI GAGCTC 1 cut(s) 685
Psp6I CCWGG 2 cut(s) 443, 685
PspGI CCWGG 2 cut(s) 443, 685
PspN4I GGNNCC 1 cut(s) 345
PspPI GGNCC 2 cut(s) 6, 436
PsuI RGATCY 1 cut(s) 327
RsaI GTAC 4 cut(s) 210, 500, 626, 671
RsaNI GTAC 4 cut(s) 209, 499, 625, 670
SacI GAGCTC 1 cut(s) 685
SaqAI TTAA 2 cut(s) 27, 80
SatI GCNGC 3 cut(s) 396, 412, 415
Sau3AI GATC 8 cut(s) 89, 138, 172, 327, 447, 456, 571, 645
Sau96I GGNCC 2 cut(s) 6, 436
SchI GAGTC 2 cut(s) 868, 874
ScrFI CCNGG 3 cut(s) 445, 615, 687
SduI GDGCHC 2 cut(s) 593, 685
SfaNI GCATC 1 cut(s) 646
SfcI CTRYAG 1 cut(s) 663
SfoI GGCGCC 1 cut(s) 345
SinI GGWCC 2 cut(s) 6, 436
SmlI CTYRAG 2 cut(s) 32, 180
SmoI CTYRAG 2 cut(s) 32, 180
Sse9I AATT 2 cut(s) 160, 791
SseBI AGGCCT 1 cut(s) 375
SsiI CCGC 3 cut(s) 411, 415, 713
SspDI GGCGCC 1 cut(s) 343
SspMI CTAG 1 cut(s) 428
SstI GAGCTC 1 cut(s) 685
StuI AGGCCT 1 cut(s) 375
StyD4I CCNGG 3 cut(s) 443, 613, 685
StyI CCWWGG 2 cut(s) 575, 798
TaaI ACNGT 2 cut(s) 421, 565
TaiI ACGT 1 cut(s) 495
TaqI TCGA 2 cut(s) 450, 783
TasI AATT 2 cut(s) 160, 791
TauI GCSGC 2 cut(s) 414, 417
TfiI GAWTC 2 cut(s) 482, 859
Tru1I TTAA 2 cut(s) 27, 80
Tru9I TTAA 2 cut(s) 27, 80
TscAI CASTG 1 cut(s) 23
TseFI GTSAC 1 cut(s) 866
TseI GCWGC 1 cut(s) 395
Tsp45I GTSAC 1 cut(s) 866
TspDTI ATGAA 5 cut(s) 114, 205, 503, 531, 752
TspRI CASTG 1 cut(s) 23
VpaK11BI GGWCC 2 cut(s) 6, 436
VspI ATTAAT 1 cut(s) 27
XagI CCTNNNNNAGG 1 cut(s) 431
XapI RAATTY 2 cut(s) 160, 791
XceI RCATGY 1 cut(s) 228
XcmI CCANNNNNNNNNTGG 1 cut(s) 592
XspI CTAG 1 cut(s) 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.