Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008936

Physical Location & Seq

Genomic Coordinates Forward (+)

12604161 .. 12607033

Gene Structure 2873 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G34470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGCGAGTTTGAGTGGGAGTTGGAGAGATGCGTATAAAGGAATGTCATCGGATAATATAAAGGGTTTAGTATTGGCTTTATCTTCAAGCTTATTCATTGGTGCTAGTTTCATTGTTAAGAAGAAAGGTCTCAAGAGAGCTGGTGCTTCTGGTCTCAGAGCAGGTTCTGGAGGTTATTCTTACCTGCTTGAGCCTCTCTGGTGGGTAGGCATGATAACGATGATTGTAGGGGAAATTGCCAATTTTGCTGCTTATGCCTTTGCGCCTGCCATTTTAGTAACTCCTCTTGGTGCTCTCAGCATAATTATCAGTGCTGCTCTTGCTCATGTCATCCTACACGAAAAGTTGCATACTTTCGGGCTTCTTGGTTGTGTCTTATGTGTTGTTGGTTCGATAACTATTGTCTTACATGCTCCTCAAGAACAAGAGATTGATTCTGTGTTACAAGTATGGAATCTTGCGACAGAACCTGCTTTTCTTCTCTACGCTGCAGCAGTAGTAGGAGCAGCCATTATACTCATAGTTCAGTTTGTACCACAGTACGGTCAGTCACATGTCATGGTATATATCGGGGTTTGTTCTCTTGTTGGATCATTGTCGGTCATGAGCGTCAAAGCGCTCGGGATAGCATTAAAGCTTACGTTTTCAGGAATGAATCAGTTAATTTACCCTCAGACATGGGTCTTCACGCTGATAGTTCTCACCTGCGTGATAACCCAAATGAACTATCTAAACAAGGCGCTTGACACTTTCAACACGGCTGTAGTTTCACCTATATACTATGTTATGTTCACATCATTGACCATCCTAGCTAGTGTCATCATGTTTAAGGACTGGGATCGACAGGACGGAACTCAGATAGTGACGGAGTTGTGTGGGTTTGTGACAATCCTTTCAGGAACCTTTTTGCTTCACAAAACAAAGGATATGGTTGATGGTTCTTCGTCCTTGGGAAATTTGGCTCTTCGCCTTCCTAAACAATTGGAAGATAGTAATGGGTTTGAGCAAGAAGGGATCCCACTCACTCTCAGACGCCACGAGTGTACCAAGTCGCCAAGGCCAATGCGTCAATTCATTCTACCGCAAGACGGTCCTGAAGCTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0012505 GO:0015693 GO:0016020 GO:0030001 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0070838 GO:0071944 GO:0072511 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mg_trans_NIPA

Protein Analysis

368

Amino Acids

39.8

Weight (kDa)

7.63

Isoelectric Point (pI)

38.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mg_trans_NIPA	PF05653	18 - 310	1.8e-133	Magnesium transporter NIPA

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008936)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34470 AT1G71900 AT1G71900 AT4G09640
fragaria_vesca	FvH4_5g28690 FvH4_5g28690 FvH4_5g28690
malus_domestica	MD08G1240300.v1.1 MD15G1432900.v1.1
prunus_persica	Prupe.1G576800_v2.0.a1
pyrus_communis	pycom08g20840 pycom15g38250
rosa_chinensis	RchiOBHm_Chr7g0220851
rosa_laevigata	RLG00000002198
rosa_multiflora	Rmu_ssc0000286.1_g000017
rosa_roxburghii	Rroxscaffold_3G00238990
rosa_rugosa	Rorug07G0197200 Rorug07G0197300
rosa_samantha	Rh7AG337900 Rh7BG328700 Rh7CG355900 Rh7DG336900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	713
Acc36I	ACCTGC	4 cut(s)	152, 192, 478, 713
AciI	CCGC	1 cut(s)	1082
AclWI	GGATC	4 cut(s)	598, 846, 1009, 1022
AcsI	RAATTY	1 cut(s)	955
AcyI	GRCGYC	1 cut(s)	1033
AfaI	GTAC	3 cut(s)	534, 542, 1045
AfeI	AGCGCT	1 cut(s)	618
AfiI	CCNNNNNNNGG	2 cut(s)	542, 1088
AflIII	ACRYGT	1 cut(s)	553
AgsI	TTSAA	2 cut(s)	87, 754
AleI	CACNNNNGTG	1 cut(s)	707
AluBI	AGCT	5 cut(s)	90, 140, 637, 812, 1100
AluI	AGCT	5 cut(s)	90, 140, 637, 812, 1100
Alw21I	GWGCWC	1 cut(s)	295
Alw26I	GTCTC	2 cut(s)	134, 158
AlwI	GGATC	4 cut(s)	598, 846, 1009, 1022
AlwNI	CAGNNNCTG	2 cut(s)	167, 470
Ama87I	CYCGRG	1 cut(s)	620
Aor51HI	AGCGCT	1 cut(s)	618
AoxI	GGCC	1 cut(s)	1058
ApeKI	GCWGC	5 cut(s)	248, 314, 488, 491, 506
ApoI	RAATTY	1 cut(s)	955
AspLEI	GCGC	3 cut(s)	265, 619, 742
AspS9I	GGNCC	1 cut(s)	1091
AsuHPI	GGTGA	2 cut(s)	694, 762
AvaI	CYCGRG	1 cut(s)	620
AvaII	GGWCC	1 cut(s)	1091
BaeI	ACNNNNGTAYC	2 cut(s)	1027, 1060
BamHI	GGATCC	1 cut(s)	1014
BauI	CACGAG	1 cut(s)	1037
BbsI	GAAGAC	1 cut(s)	676
Bbv12I	GWGCWC	1 cut(s)	295
BbvI	GCAGC	5 cut(s)	235, 301, 475, 503, 518
BccI	CCATC	2 cut(s)	812, 929
BceAI	ACGGC	1 cut(s)	774
BcoDI	GTCTC	2 cut(s)	134, 158
BfaI	CTAG	3 cut(s)	105, 809, 813
BfmI	CTRYAG	2 cut(s)	489, 762
BfoI	RGCGCY	2 cut(s)	620, 743
BfuAI	ACCTGC	4 cut(s)	152, 192, 478, 713
BisI	GCNGC	5 cut(s)	249, 315, 489, 492, 507
BlsI	GCNGC	5 cut(s)	250, 316, 490, 493, 508
Bme18I	GGWCC	1 cut(s)	1091
BmeT110I	CYCGRG	1 cut(s)	620
BmgT120I	GGNCC	1 cut(s)	1091
BmiI	GGNNCC	2 cut(s)	901, 1016
BmrI	ACTGGG	1 cut(s)	844
BmsI	GCATC	1 cut(s)	19
BmuI	ACTGGG	1 cut(s)	844
BoxI	GACNNNNGTC	1 cut(s)	680
BpiI	GAAGAC	1 cut(s)	676
BpmI	CTGGAG	1 cut(s)	189
BpuEI	CTTGAG	3 cut(s)	116, 209, 402
BsaHI	GRCGYC	1 cut(s)	1033
BsaI	GGTCTC	2 cut(s)	134, 158
BsaJI	CCNNGG	2 cut(s)	948, 1055
Bsc4I	CCNNNNNNNGG	2 cut(s)	542, 1088
Bse1I	ACTGG	1 cut(s)	839
BseDI	CCNNGG	2 cut(s)	948, 1055
BseGI	GGATG	2 cut(s)	330, 804
BseLI	CCNNNNNNNGG	2 cut(s)	542, 1088
BseMII	CTCAG	5 cut(s)	169, 310, 686, 869, 1042
BseNI	ACTGG	1 cut(s)	839
BseRI	GAGGAG	2 cut(s)	273, 405
BseXI	GCAGC	5 cut(s)	235, 301, 475, 503, 518
BshFI	GGCC	1 cut(s)	1060
BsiHKAI	GWGCWC	1 cut(s)	295
BsiHKCI	CYCGRG	1 cut(s)	620
BslI	CCNNNNNNNGG	2 cut(s)	542, 1088
BsmAI	GTCTC	2 cut(s)	134, 158
BsnI	GGCC	1 cut(s)	1060
Bso31I	GGTCTC	2 cut(s)	134, 158
BsoBI	CYCGRG	1 cut(s)	620
Bsp1286I	GDGCHC	1 cut(s)	295
Bsp143I	GATC	3 cut(s)	590, 838, 1014
BspACI	CCGC	1 cut(s)	1082
BspANI	GGCC	1 cut(s)	1060
BspCNI	CTCAG	5 cut(s)	168, 309, 685, 868, 1041
BspHI	TCATGA	1 cut(s)	603
BspLI	GGNNCC	2 cut(s)	901, 1016
BspMAI	CTGCAG	1 cut(s)	493
BspMI	ACCTGC	4 cut(s)	152, 192, 478, 713
BspPI	GGATC	4 cut(s)	598, 846, 1009, 1022
BspQI	GCTCTTC	1 cut(s)	969
BspTNI	GGTCTC	2 cut(s)	134, 158
BsrI	ACTGG	1 cut(s)	839
BssECI	CCNNGG	2 cut(s)	948, 1055
BssMI	GATC	3 cut(s)	590, 838, 1014
BssNI	GRCGYC	1 cut(s)	1033
BssSI	CACGAG	1 cut(s)	1037
BssT1I	CCWWGG	2 cut(s)	948, 1055
Bst2BI	CACGAG	1 cut(s)	1037
Bst4CI	ACNGT	3 cut(s)	540, 545, 1091
Bst6I	CTCTTC	1 cut(s)	969
BstACI	GRCGYC	1 cut(s)	1033
BstC8I	GCNNGC	1 cut(s)	267
BstDEI	CTNAG	5 cut(s)	155, 296, 672, 855, 1028
BstF5I	GGATG	2 cut(s)	330, 804
BstH2I	RGCGCY	2 cut(s)	620, 743
BstHHI	GCGC	3 cut(s)	265, 619, 742
BstKTI	GATC	3 cut(s)	593, 841, 1017
BstMAI	GTCTC	2 cut(s)	134, 158
BstMBI	GATC	3 cut(s)	590, 838, 1014
BstMWI	GCNNNNNNNGC	3 cut(s)	245, 254, 320
BstNSI	RCATGY	2 cut(s)	413, 557
BstPAI	GACNNNNGTC	1 cut(s)	680
BstSFI	CTRYAG	2 cut(s)	489, 762
BstV1I	GCAGC	5 cut(s)	235, 301, 475, 503, 518
BstV2I	GAAGAC	1 cut(s)	676
BstX2I	RGATCY	1 cut(s)	1014
BstYI	RGATCY	1 cut(s)	1014
BsuRI	GGCC	1 cut(s)	1060
BtsCI	GGATG	2 cut(s)	330, 804
BtsIMutI	CAGTG	1 cut(s)	316
BveI	ACCTGC	4 cut(s)	152, 192, 478, 713
Cac8I	GCNNGC	1 cut(s)	267
CaiI	CAGNNNCTG	2 cut(s)	167, 470
CciI	TCATGA	1 cut(s)	603
CfoI	GCGC	3 cut(s)	265, 619, 742
Cfr13I	GGNCC	1 cut(s)	1091
CseI	GACGC	3 cut(s)	598, 1041, 1055
Csp6I	GTAC	3 cut(s)	533, 541, 1044
CviAII	CATG	8 cut(s)	211, 326, 410, 554, 559, 604, 678, 823
CviQI	GTAC	3 cut(s)	533, 541, 1044
DdeI	CTNAG	5 cut(s)	155, 296, 672, 855, 1028
DpnI	GATC	3 cut(s)	592, 840, 1016
DpnII	GATC	3 cut(s)	590, 838, 1014
Eam1104I	CTCTTC	1 cut(s)	969
EarI	CTCTTC	1 cut(s)	969
Eco130I	CCWWGG	2 cut(s)	948, 1055
Eco31I	GGTCTC	2 cut(s)	134, 158
Eco47I	GGWCC	1 cut(s)	1091
Eco47III	AGCGCT	1 cut(s)	618
Eco88I	CYCGRG	1 cut(s)	620
EcoT14I	CCWWGG	2 cut(s)	948, 1055
ErhI	CCWWGG	2 cut(s)	948, 1055
FaeI	CATG	8 cut(s)	214, 329, 413, 557, 562, 607, 681, 826
FatI	CATG	8 cut(s)	210, 325, 409, 553, 558, 603, 677, 822
Fnu4HI	GCNGC	5 cut(s)	249, 315, 489, 492, 507
FokI	GGATG	2 cut(s)	317, 791
Fsp4HI	GCNGC	5 cut(s)	249, 315, 489, 492, 507
FspBI	CTAG	3 cut(s)	105, 809, 813
GlaI	GCGC	3 cut(s)	264, 618, 741
GluI	GCNGC	5 cut(s)	249, 315, 489, 492, 507
GsuI	CTGGAG	1 cut(s)	189
HaeII	RGCGCY	2 cut(s)	620, 743
HaeIII	GGCC	1 cut(s)	1060
HgaI	GACGC	3 cut(s)	598, 1041, 1055
HhaI	GCGC	3 cut(s)	265, 619, 742
Hin1I	GRCGYC	1 cut(s)	1033
Hin1II	CATG	8 cut(s)	214, 329, 413, 557, 562, 607, 681, 826
Hin6I	GCGC	3 cut(s)	263, 617, 740
HinP1I	GCGC	3 cut(s)	263, 617, 740
HindIII	AAGCTT	2 cut(s)	88, 635
HinfI	GANTC	3 cut(s)	434, 454, 655
HphI	GGTGA	2 cut(s)	694, 762
Hpy166II	GTNNAC	2 cut(s)	792, 1044
Hpy188I	TCNGA	5 cut(s)	52, 158, 675, 858, 1031
Hpy188III	TCNNGA	8 cut(s)	133, 168, 419, 604, 622, 648, 897, 1094
Hpy8I	GTNNAC	2 cut(s)	792, 1044
HpyAV	CCTTC	2 cut(s)	980, 1004
HpyCH4III	ACNGT	3 cut(s)	540, 545, 1091
HpyCH4IV	ACGT	1 cut(s)	641
HpyCH4V	TGCA	2 cut(s)	349, 491
HpyF10VI	GCNNNNNNNGC	3 cut(s)	245, 254, 320
HpyF3I	CTNAG	5 cut(s)	155, 296, 672, 855, 1028
HpySE526I	ACGT	1 cut(s)	641
Hsp92I	GRCGYC	1 cut(s)	1033
Hsp92II	CATG	8 cut(s)	214, 329, 413, 557, 562, 607, 681, 826
HspAI	GCGC	3 cut(s)	263, 617, 740
Kzo9I	GATC	3 cut(s)	590, 838, 1014
LguI	GCTCTTC	1 cut(s)	969
LmnI	GCTCC	2 cut(s)	418, 503
Lsp1109I	GCAGC	5 cut(s)	235, 301, 475, 503, 518
LweI	GCATC	1 cut(s)	19
MaeI	CTAG	3 cut(s)	105, 809, 813
MaeII	ACGT	1 cut(s)	641
MaeIII	GTNAC	5 cut(s)	277, 441, 549, 862, 883
MalI	GATC	3 cut(s)	592, 840, 1016
MboI	GATC	3 cut(s)	590, 838, 1014
MboII	GAAGA	7 cut(s)	75, 133, 470, 676, 933, 956, 998
MfeI	CAATTG	1 cut(s)	980
MflI	RGATCY	1 cut(s)	1014
MhlI	GDGCHC	1 cut(s)	295
MluCI	AATT	7 cut(s)	234, 241, 303, 663, 955, 980, 1070
MmeI	TCCRAC	1 cut(s)	568
MnlI	CCTC	5 cut(s)	164, 204, 294, 426, 681
MseI	TTAA	4 cut(s)	117, 632, 662, 828
MslI	CAYNNNNRTG	1 cut(s)	707
MunI	CAATTG	1 cut(s)	980
MwoI	GCNNNNNNNGC	3 cut(s)	245, 254, 320
NdeII	GATC	3 cut(s)	590, 838, 1014
NlaIII	CATG	8 cut(s)	214, 329, 413, 557, 562, 607, 681, 826
NlaIV	GGNNCC	2 cut(s)	901, 1016
NmuCI	GTSAC	3 cut(s)	549, 862, 883
NspI	RCATGY	2 cut(s)	413, 557
OliI	CACNNNNGTG	1 cut(s)	707
PagI	TCATGA	1 cut(s)	603
PaqCI	CACCTGC	1 cut(s)	713
PciI	ACATGT	1 cut(s)	553
PciSI	GCTCTTC	1 cut(s)	969
PfeI	GAWTC	3 cut(s)	434, 454, 655
PkrI	GCNGC	5 cut(s)	250, 316, 490, 493, 508
PscI	ACATGT	1 cut(s)	553
PshAI	GACNNNNGTC	1 cut(s)	680
PspN4I	GGNNCC	2 cut(s)	901, 1016
PspPI	GGNCC	1 cut(s)	1091
PstI	CTGCAG	1 cut(s)	493
PstNI	CAGNNNCTG	2 cut(s)	167, 470
PsuI	RGATCY	1 cut(s)	1014
RsaI	GTAC	3 cut(s)	534, 542, 1045
RsaNI	GTAC	3 cut(s)	533, 541, 1044
RseI	CAYNNNNRTG	1 cut(s)	707
SapI	GCTCTTC	1 cut(s)	969
SaqAI	TTAA	4 cut(s)	117, 632, 662, 828
SatI	GCNGC	5 cut(s)	249, 315, 489, 492, 507
Sau3AI	GATC	3 cut(s)	590, 838, 1014
Sau96I	GGNCC	1 cut(s)	1091
SduI	GDGCHC	1 cut(s)	295
SfaNI	GCATC	1 cut(s)	19
SfcI	CTRYAG	2 cut(s)	489, 762
SinI	GGWCC	1 cut(s)	1091
SmiMI	CAYNNNNRTG	1 cut(s)	707
SmlI	CTYRAG	3 cut(s)	131, 188, 417
SmoI	CTYRAG	3 cut(s)	131, 188, 417
Sse9I	AATT	7 cut(s)	234, 241, 303, 663, 955, 980, 1070
SsiI	CCGC	1 cut(s)	1082
SspMI	CTAG	3 cut(s)	105, 809, 813
StyI	CCWWGG	2 cut(s)	948, 1055
TaaI	ACNGT	3 cut(s)	540, 545, 1091
TaiI	ACGT	1 cut(s)	644
TaqI	TCGA	2 cut(s)	392, 841
TaqII	GACCGA	1 cut(s)	589
TasI	AATT	7 cut(s)	234, 241, 303, 663, 955, 980, 1070
TfiI	GAWTC	3 cut(s)	434, 454, 655
Tru1I	TTAA	4 cut(s)	117, 632, 662, 828
Tru9I	TTAA	4 cut(s)	117, 632, 662, 828
TscAI	CASTG	1 cut(s)	316
TseFI	GTSAC	3 cut(s)	549, 862, 883
TseI	GCWGC	5 cut(s)	248, 314, 488, 491, 506
Tsp45I	GTSAC	3 cut(s)	549, 862, 883
TspDTI	ATGAA	5 cut(s)	85, 100, 668, 737, 1063
TspGWI	ACGGA	2 cut(s)	864, 881
TspRI	CASTG	1 cut(s)	316
VpaK11BI	GGWCC	1 cut(s)	1091
XapI	RAATTY	1 cut(s)	955
XceI	RCATGY	2 cut(s)	413, 557
XspI	CTAG	3 cut(s)	105, 809, 813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.