Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008936

Physical Location & Seq

Genomic Coordinates Reverse (-)

6087768 .. 6090995

Gene Structure 3228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G09640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGTGTATTCTAGTGGAAGTTGGAGAGATGCGTATAAAGGAATGTCGTCTGATAATGTAAAGGGTTTAGTGTTGGCTCTATCTTCAAGTATATTCATTGGAGCTAGCTTCATTGTTAAGAAGAAAGGACTTAAGAAAGCTGGTGCTTCTGGTCTCAGGGCAGGGTCTGGAGGCTATTCTTACTTGCTTGAGCCTCTCTGGTGGATAGGAATGATAACAATGATTGTGGGGGAAATTGCAAACTTTGCTGCGTATGCGTTTGCACCTGCCATTCTAGTTACTCCTCTTGGTGCGCTTAGCATTATTATCAGCGCTTCTCTAGCACATATCATCTTACAAGAAAAGTTGCACACTTTCGGGATCCTTGGTTGTGCTTTATGTATCGTTGGTTCGGTTACAATCGTGTTACATGCTCCACAAGAACAAGATATTGTTTCCGTTTTAGAAGTTTGGAATCTTGCAACAGAACCTGCTTTTCTCTTCTACGCTGCGGCTGTGGTAGGAGCAGCTATTGTACTTATAGTTCAATTTATACCACTTTACGGGCAATCCCATGTCATGGTATATATCGGTGTTTGCTCTCTTATAGGATCATTATCGGTTATGAGCGTGAAGGCGCTTGGAATAGCGTTGAAACTCACATTTTCTGGAACGAATCAGTTAGGGTACCCGCAAACATGGGTCTTCACCGTGATAGTTCTTTTCTGCGTGATAACACAAATGAACTATTTAAACAAGGCGCTTGATACGTTCAACACAGCAGTGGTTTCACCCATATATTATGTTATGTTCACGTCGTTGACGATCTTGGCTAGTGTCATCATGTTTAAGGATTGGGATCGGCAGAGCGGAACACAGATCATGACAGAGTTGTGTGGGTTCGTCACAATCCTATCTGGAACTTTTCTTCTTCACACAACAACAGACATGGTTGATGGAGAGTCTAAAGGAAATTTATCATCAGAGGAGGATAGTCATCTGCTTCTGCGAATTCCAAAACATTCAGAAGACAGTAACGGGTTTGTGCAGGATGGCATCATTCTCAGTCTAAGACGCCAAGAGTCTGCAAAGTCACCACGGCCTGCTCGGCAAAACAAGCAACTGGAAGATGATCTTGAAGCTGTACCACTCCGAAGACAAGAGAGTTCATTACGTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0012505 GO:0015693 GO:0016020 GO:0030001 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0070838 GO:0071944 GO:0072511 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mg_trans_NIPA

Protein Analysis

386

Amino Acids

41.86

Weight (kDa)

6.66

Isoelectric Point (pI)

42.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mg_trans_NIPA	PF05653	18 - 310	8.3e-130	Magnesium transporter NIPA

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008936)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34470 AT1G71900 AT1G71900 AT4G09640
fragaria_vesca	FvH4_5g28690 FvH4_5g28690 FvH4_5g28690
malus_domestica	MD08G1240300.v1.1 MD15G1432900.v1.1
prunus_persica	Prupe.1G576800_v2.0.a1
pyrus_communis	pycom08g20840 pycom15g38250
rosa_chinensis	RchiOBHm_Chr7g0220851
rosa_laevigata	RLG00000002198
rosa_multiflora	Rmu_ssc0000286.1_g000017
rosa_roxburghii	Rroxscaffold_3G00238990
rosa_rugosa	Rorug07G0197200 Rorug07G0197300
rosa_samantha	Rh7AG337900 Rh7BG328700 Rh7CG355900 Rh7DG336900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	274
Acc36I	ACCTGC	2 cut(s)	274, 478
Acc65I	GGTACC	1 cut(s)	666
AccB1I	GGYRCC	1 cut(s)	666
AccB7I	CCANNNNNTGG	1 cut(s)	559
AccBSI	CCGCTC	1 cut(s)	849
AciI	CCGC	3 cut(s)	491, 671, 849
AclWI	GGATC	4 cut(s)	355, 368, 598, 846
AcsI	RAATTY	2 cut(s)	952, 990
AcyI	GRCGYC	1 cut(s)	1054
AfaI	GTAC	3 cut(s)	516, 668, 1125
AfeI	AGCGCT	1 cut(s)	313
AfiI	CCNNNNNNNGG	2 cut(s)	542, 559
AflII	CTTAAG	1 cut(s)	131
AgsI	TTSAA	5 cut(s)	87, 527, 634, 754, 1118
AjiI	CACGTC	1 cut(s)	795
AleI	CACNNNNGTG	1 cut(s)	761
AluBI	AGCT	5 cut(s)	104, 108, 140, 509, 1121
AluI	AGCT	5 cut(s)	104, 108, 140, 509, 1121
Alw26I	GTCTC	1 cut(s)	158
AlwI	GGATC	4 cut(s)	355, 368, 598, 846
AlwNI	CAGNNNCTG	2 cut(s)	167, 470
Aor51HI	AGCGCT	1 cut(s)	313
AoxI	GGCC	1 cut(s)	1079
ApeKI	GCWGC	3 cut(s)	248, 488, 506
ApoI	RAATTY	2 cut(s)	952, 990
Asp718I	GGTACC	1 cut(s)	666
AspLEI	GCGC	4 cut(s)	295, 314, 619, 742
AsuHPI	GGTGA	3 cut(s)	679, 762, 1065
AsuNHI	GCTAGC	1 cut(s)	104
BamHI	GGATCC	1 cut(s)	360
BanI	GGYRCC	1 cut(s)	666
BbsI	GAAGAC	3 cut(s)	676, 1014, 1141
BbvI	GCAGC	3 cut(s)	235, 475, 518
BccI	CCATC	2 cut(s)	929, 1025
BceAI	ACGGC	1 cut(s)	1094
BcoDI	GTCTC	1 cut(s)	158
BfaI	CTAG	5 cut(s)	12, 105, 275, 320, 813
BfoI	RGCGCY	3 cut(s)	315, 620, 743
BfrI	CTTAAG	1 cut(s)	131
BfuAI	ACCTGC	2 cut(s)	274, 478
BglI	GCCNNNNNGGC	1 cut(s)	1087
BisI	GCNGC	4 cut(s)	249, 489, 492, 507
BlpI	GCTNAGC	1 cut(s)	296
BlsI	GCNGC	4 cut(s)	250, 490, 493, 508
BmgBI	CACGTC	1 cut(s)	795
BmiI	GGNNCC	2 cut(s)	362, 668
BmsI	GCATC	2 cut(s)	19, 1044
BmtI	GCTAGC	1 cut(s)	108
BpiI	GAAGAC	3 cut(s)	676, 1014, 1141
BpmI	CTGGAG	1 cut(s)	189
Bpu1102I	GCTNAGC	1 cut(s)	296
BpuEI	CTTGAG	1 cut(s)	209
BsaBI	GATNNNNATC	3 cut(s)	595, 837, 975
BsaHI	GRCGYC	1 cut(s)	1054
BsaI	GGTCTC	1 cut(s)	158
BsaJI	CCNNGG	2 cut(s)	364, 1076
Bsc4I	CCNNNNNNNGG	2 cut(s)	542, 559
Bse1I	ACTGG	1 cut(s)	1107
Bse8I	GATNNNNATC	3 cut(s)	595, 837, 975
BseDI	CCNNGG	2 cut(s)	364, 1076
BseGI	GGATG	1 cut(s)	1036
BseJI	GATNNNNATC	3 cut(s)	595, 837, 975
BseLI	CCNNNNNNNGG	2 cut(s)	542, 559
BseMII	CTCAG	2 cut(s)	169, 1057
BseNI	ACTGG	1 cut(s)	1107
BseRI	GAGGAG	2 cut(s)	273, 980
BseXI	GCAGC	3 cut(s)	235, 475, 518
BsgI	GTGCAG	1 cut(s)	1046
BshFI	GGCC	1 cut(s)	1081
BshNI	GGYRCC	1 cut(s)	666
BslI	CCNNNNNNNGG	2 cut(s)	542, 559
BsmAI	GTCTC	1 cut(s)	158
BsnI	GGCC	1 cut(s)	1081
Bso31I	GGTCTC	1 cut(s)	158
Bsp143I	GATC	6 cut(s)	360, 590, 804, 838, 858, 1111
Bsp1720I	GCTNAGC	1 cut(s)	296
BspACI	CCGC	3 cut(s)	491, 671, 849
BspANI	GGCC	1 cut(s)	1081
BspCNI	CTCAG	2 cut(s)	168, 1056
BspHI	TCATGA	1 cut(s)	861
BspLI	GGNNCC	2 cut(s)	362, 668
BspMI	ACCTGC	2 cut(s)	274, 478
BspOI	GCTAGC	1 cut(s)	108
BspPI	GGATC	4 cut(s)	355, 368, 598, 846
BspT107I	GGYRCC	1 cut(s)	666
BspTI	CTTAAG	1 cut(s)	131
BspTNI	GGTCTC	1 cut(s)	158
BsrBI	CCGCTC	1 cut(s)	849
BsrI	ACTGG	1 cut(s)	1107
BssECI	CCNNGG	2 cut(s)	364, 1076
BssMI	GATC	6 cut(s)	360, 590, 804, 838, 858, 1111
BssNI	GRCGYC	1 cut(s)	1054
BssT1I	CCWWGG	1 cut(s)	364
Bst4CI	ACNGT	2 cut(s)	691, 1013
Bst6I	CTCTTC	1 cut(s)	485
BstACI	GRCGYC	1 cut(s)	1054
BstAFI	CTTAAG	1 cut(s)	131
BstAPI	GCANNNNNTGC	1 cut(s)	245
BstC8I	GCNNGC	2 cut(s)	106, 1083
BstDEI	CTNAG	4 cut(s)	155, 296, 1043, 1049
BstDSI	CCRYGG	1 cut(s)	1076
BstF5I	GGATG	1 cut(s)	1036
BstH2I	RGCGCY	3 cut(s)	315, 620, 743
BstHHI	GCGC	4 cut(s)	295, 314, 619, 742
BstKTI	GATC	6 cut(s)	363, 593, 807, 841, 861, 1114
BstMAI	GTCTC	1 cut(s)	158
BstMBI	GATC	6 cut(s)	360, 590, 804, 838, 858, 1111
BstMWI	GCNNNNNNNGC	5 cut(s)	245, 254, 320, 1087, 1096
BstNSI	RCATGY	1 cut(s)	413
BstV1I	GCAGC	3 cut(s)	235, 475, 518
BstV2I	GAAGAC	3 cut(s)	676, 1014, 1141
BstX2I	RGATCY	1 cut(s)	360
BstYI	RGATCY	1 cut(s)	360
BsuRI	GGCC	1 cut(s)	1081
BtgI	CCRYGG	1 cut(s)	1076
BtrI	CACGTC	1 cut(s)	795
BtsCI	GGATG	1 cut(s)	1036
BtsI	GCAGTG	1 cut(s)	768
BtsIMutI	CAGTG	1 cut(s)	768
BveI	ACCTGC	2 cut(s)	274, 478
Cac8I	GCNNGC	2 cut(s)	106, 1083
CaiI	CAGNNNCTG	2 cut(s)	167, 470
CciI	TCATGA	1 cut(s)	861
CfoI	GCGC	4 cut(s)	295, 314, 619, 742
CseI	GACGC	1 cut(s)	1062
Csp6I	GTAC	3 cut(s)	515, 667, 1124
CspCI	CAANNNNNGTGG	2 cut(s)	207, 242
CviAII	CATG	7 cut(s)	410, 554, 559, 678, 823, 862, 928
CviQI	GTAC	3 cut(s)	515, 667, 1124
DdeI	CTNAG	4 cut(s)	155, 296, 1043, 1049
DpnI	GATC	6 cut(s)	362, 592, 806, 840, 860, 1113
DpnII	GATC	6 cut(s)	360, 590, 804, 838, 858, 1111
DraI	TTTAAA	1 cut(s)	732
Eam1104I	CTCTTC	1 cut(s)	485
EarI	CTCTTC	1 cut(s)	485
Eco130I	CCWWGG	1 cut(s)	364
Eco31I	GGTCTC	1 cut(s)	158
Eco47III	AGCGCT	1 cut(s)	313
EcoRI	GAATTC	1 cut(s)	990
EcoT14I	CCWWGG	1 cut(s)	364
ErhI	CCWWGG	1 cut(s)	364
FaeI	CATG	7 cut(s)	413, 557, 562, 681, 826, 865, 931
FalI	AAGNNNNNCTT	2 cut(s)	1098, 1130
FatI	CATG	7 cut(s)	409, 553, 558, 677, 822, 861, 927
FauI	CCCGC	1 cut(s)	678
Fnu4HI	GCNGC	4 cut(s)	249, 489, 492, 507
FokI	GGATG	1 cut(s)	1043
Fsp4HI	GCNGC	4 cut(s)	249, 489, 492, 507
FspBI	CTAG	5 cut(s)	12, 105, 275, 320, 813
GlaI	GCGC	4 cut(s)	294, 313, 618, 741
GluI	GCNGC	4 cut(s)	249, 489, 492, 507
GsuI	CTGGAG	1 cut(s)	189
HaeII	RGCGCY	3 cut(s)	315, 620, 743
HaeIII	GGCC	1 cut(s)	1081
HgaI	GACGC	1 cut(s)	1062
HhaI	GCGC	4 cut(s)	295, 314, 619, 742
Hin1I	GRCGYC	1 cut(s)	1054
Hin1II	CATG	7 cut(s)	413, 557, 562, 681, 826, 865, 931
Hin6I	GCGC	4 cut(s)	293, 312, 617, 740
HinP1I	GCGC	4 cut(s)	293, 312, 617, 740
HincII	GTYRAC	1 cut(s)	801
HindII	GTYRAC	1 cut(s)	801
HinfI	GANTC	4 cut(s)	454, 655, 941, 1061
HphI	GGTGA	3 cut(s)	679, 762, 1065
Hpy166II	GTNNAC	2 cut(s)	792, 801
Hpy188I	TCNGA	4 cut(s)	52, 964, 1006, 1133
Hpy188III	TCNNGA	6 cut(s)	168, 358, 648, 862, 897, 1115
Hpy8I	GTNNAC	2 cut(s)	792, 801
Hpy99I	CGWCG	1 cut(s)	799
HpyAV	CCTTC	1 cut(s)	607
HpyCH4III	ACNGT	2 cut(s)	691, 1013
HpyCH4IV	ACGT	3 cut(s)	749, 794, 1153
HpyCH4V	TGCA	6 cut(s)	239, 263, 349, 461, 1027, 1067
HpyF10VI	GCNNNNNNNGC	5 cut(s)	245, 254, 320, 1087, 1096
HpyF3I	CTNAG	4 cut(s)	155, 296, 1043, 1049
HpySE526I	ACGT	3 cut(s)	749, 794, 1153
Hsp92I	GRCGYC	1 cut(s)	1054
Hsp92II	CATG	7 cut(s)	413, 557, 562, 681, 826, 865, 931
HspAI	GCGC	4 cut(s)	293, 312, 617, 740
KpnI	GGTACC	1 cut(s)	670
Kzo9I	GATC	6 cut(s)	360, 590, 804, 838, 858, 1111
LmnI	GCTCC	3 cut(s)	101, 418, 503
Lsp1109I	GCAGC	3 cut(s)	235, 475, 518
LweI	GCATC	2 cut(s)	19, 1044
MaeI	CTAG	5 cut(s)	12, 105, 275, 320, 813
MaeII	ACGT	3 cut(s)	749, 794, 1153
MaeIII	GTNAC	6 cut(s)	277, 394, 405, 883, 1013, 1071
MalI	GATC	6 cut(s)	362, 592, 806, 840, 860, 1113
MbiI	CCGCTC	1 cut(s)	849
MboI	GATC	6 cut(s)	360, 590, 804, 838, 858, 1111
MboII	GAAGA	9 cut(s)	75, 133, 472, 676, 899, 902, 1019, 1118, 1146
MflI	RGATCY	1 cut(s)	360
MluCI	AATT	4 cut(s)	234, 527, 952, 990
MlyI	GAGTC	2 cut(s)	950, 1070
MnlI	CCTC	5 cut(s)	164, 204, 294, 958, 961
MseI	TTAA	4 cut(s)	117, 132, 731, 828
MslI	CAYNNNNRTG	1 cut(s)	761
MspCI	CTTAAG	1 cut(s)	131
MwoI	GCNNNNNNNGC	5 cut(s)	245, 254, 320, 1087, 1096
NdeII	GATC	6 cut(s)	360, 590, 804, 838, 858, 1111
NheI	GCTAGC	1 cut(s)	104
NlaIII	CATG	7 cut(s)	413, 557, 562, 681, 826, 865, 931
NlaIV	GGNNCC	2 cut(s)	362, 668
NmeAIII	GCCGAG	1 cut(s)	1066
NmuCI	GTSAC	2 cut(s)	883, 1071
NspI	RCATGY	1 cut(s)	413
OliI	CACNNNNGTG	1 cut(s)	761
PagI	TCATGA	1 cut(s)	861
PaqCI	CACCTGC	1 cut(s)	274
PcsI	WCGNNNNNNNCGW	1 cut(s)	800
PfeI	GAWTC	2 cut(s)	454, 655
PflMI	CCANNNNNTGG	1 cut(s)	559
PkrI	GCNGC	4 cut(s)	250, 490, 493, 508
PleI	GAGTC	2 cut(s)	949, 1069
PpsI	GAGTC	2 cut(s)	949, 1069
PspN4I	GGNNCC	2 cut(s)	362, 668
PsrI	GAACNNNNNNTAC	4 cut(s)	373, 405, 507, 539
PstNI	CAGNNNCTG	2 cut(s)	167, 470
PsuI	RGATCY	1 cut(s)	360
RsaI	GTAC	3 cut(s)	516, 668, 1125
RsaNI	GTAC	3 cut(s)	515, 667, 1124
RseI	CAYNNNNRTG	1 cut(s)	761
SaqAI	TTAA	4 cut(s)	117, 132, 731, 828
SatI	GCNGC	4 cut(s)	249, 489, 492, 507
Sau3AI	GATC	6 cut(s)	360, 590, 804, 838, 858, 1111
SchI	GAGTC	2 cut(s)	950, 1070
SfaNI	GCATC	2 cut(s)	19, 1044
SmiMI	CAYNNNNRTG	1 cut(s)	761
SmlI	CTYRAG	2 cut(s)	131, 188
SmoI	CTYRAG	2 cut(s)	131, 188
Sse9I	AATT	4 cut(s)	234, 527, 952, 990
SsiI	CCGC	3 cut(s)	491, 671, 849
SspMI	CTAG	5 cut(s)	12, 105, 275, 320, 813
StyI	CCWWGG	1 cut(s)	364
TaaI	ACNGT	2 cut(s)	691, 1013
TaiI	ACGT	3 cut(s)	752, 797, 1156
TasI	AATT	4 cut(s)	234, 527, 952, 990
TatI	WGTACW	1 cut(s)	514
TauI	GCSGC	1 cut(s)	494
TfiI	GAWTC	2 cut(s)	454, 655
Tru1I	TTAA	4 cut(s)	117, 132, 731, 828
Tru9I	TTAA	4 cut(s)	117, 132, 731, 828
TscAI	CASTG	1 cut(s)	768
TseFI	GTSAC	2 cut(s)	883, 1071
TseI	GCWGC	3 cut(s)	248, 488, 506
Tsp45I	GTSAC	2 cut(s)	883, 1071
TspDTI	ATGAA	5 cut(s)	85, 100, 737, 1137, 1146
TspGWI	ACGGA	1 cut(s)	427
TspRI	CASTG	1 cut(s)	768
Van91I	CCANNNNNTGG	1 cut(s)	559
Vha464I	CTTAAG	1 cut(s)	131
XapI	RAATTY	2 cut(s)	952, 990
XceI	RCATGY	1 cut(s)	413
XspI	CTAG	5 cut(s)	12, 105, 275, 320, 813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.