Rroxscaffold_3G00238990

Acts as a Mg(2 ) transporter. Can also transport other divalent cations such as Fe(2 ), Sr(2 ), Ba(2 ), Mn(2 ) and Co(2 ) but to a much less extent than Mg(2 )

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0008936
Physical Location & Seq
Forward (+)
27577917 .. 27585766
7850 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00238990.1

Sequence Viewer

Length: 987 bp
ATGGCGACTCAGGTTCAGAGCCCGATGAGCTGGAGAGACTCGTACAGAGGCATGTCCTCTGACAACATTAAGGGTTTGGTTCTTGCTTTGTCTTCAAGCTTGTTTATTGGTGCTAGTTTCATAGTCAAGAAAAAGGGCTTGAAGAAGGCTGGGGCTTCTGGCATCCGAGCAGGAGTGGGAGGATATTCATACCTATATGAGCCACTTTGGTGGGTGGGCATGATCACAATGATTGTAGGGGAAGTTGCTAATTTTGCGGCTTATGCATTTGCGCCAGCTATACTAGTAACTCCTCTTGGCGCTCTCAGCATAATTATCAGTGCTGTGCTTGCTCATATTATTTTAAGGGAGAAGCTGCATATCTTTGGGATTCTTGGTTGTGTTTTATGTGTTGTTGGTTCTACAACAATTGTTTTACATGCTCCTCAAGAACGTGAGATTGAATCTGTAACAGAAGTTTGGGCTCTTGCCATGGAACCAGGTTTTCTATTTTATGCAGCTCTTGTCATAACTGCTGTTTTTATACTTATATTCCACTTCATCCCGCAATATGGCCAGACACACATAATGGTTTACATTGGAGTTTGTTCGCTTGTAGGTTCCTTGTCGGTCATGAGTGTTAAAGCCCTTGGAATTGCTCTAAAGTTGACGTTATCTGGAATGAACCAACTAGTCTATCCCCAAACTTGGGTCTTCACTTTAGTTGTAATTACTTGTGTGCTCACCCAAATGAATTACTTGAACAAGGCACTTGATACATTCAACACAGCCGTGGTATCTCCTATATACTATGTTATGTTCACATCACTAACTATTCTGGCTAGCGTGATCATGTTTAAGATAATGCTTAATCCACATTGTCCCCATCTTACTGTACTTTCAGGATTGGGACAGACAGAGTCCAACACAAGTTATCACAGAAATGTGTGGCTTTGTGACTATACTTGGAGGAACTTTTCTTCTTCACAGAACAAAAGATATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mg_trans_NIPA

Protein Analysis

328

Amino Acids

36.08

Weight (kDa)

8.95

Isoelectric Point (pI)

35.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mg_trans_NIPA PF05653 21 - 283 1.7e-122 Magnesium transporter NIPA
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 257, 545
AcoI YGGCCR 1 cut(s) 553
AfaI GTAC 2 cut(s) 44, 876
AfiI CCNNNNNNNGG 3 cut(s) 551, 687, 688
AgsI TTSAA 5 cut(s) 96, 142, 443, 742, 763
AhlI ACTAGT 2 cut(s) 283, 670
AjnI CCWGG 1 cut(s) 478
AleI CACNNNNGTG 2 cut(s) 208, 770
AluBI AGCT 5 cut(s) 30, 99, 278, 355, 500
AluI AGCT 5 cut(s) 30, 99, 278, 355, 500
Alw21I GWGCWC 1 cut(s) 723
Alw26I GTCTC 1 cut(s) 30
AoxI GGCC 1 cut(s) 553
ApeKI GCWGC 2 cut(s) 355, 497
AspLEI GCGC 2 cut(s) 274, 302
AsuHPI GGTGA 1 cut(s) 715
AsuNHI GCTAGC 1 cut(s) 821
BalI TGGCCA 1 cut(s) 555
BanII GRGCYC 2 cut(s) 23, 466
BbsI GAAGAC 2 cut(s) 84, 685
Bbv12I GWGCWC 1 cut(s) 723
BbvI GCAGC 2 cut(s) 342, 509
BccI CCATC 1 cut(s) 873
BceAI ACGGC 1 cut(s) 755
BciT130I CCWGG 1 cut(s) 480
BclI TGATCA 2 cut(s) 222, 828
BcoDI GTCTC 1 cut(s) 30
BcuI ACTAGT 2 cut(s) 283, 670
BfaI CTAG 4 cut(s) 114, 284, 671, 822
BfoI RGCGCY 1 cut(s) 303
BisI GCNGC 3 cut(s) 258, 356, 498
BlsI GCNGC 3 cut(s) 259, 357, 499
Bme1390I CCNGG 1 cut(s) 480
BmiI GGNNCC 2 cut(s) 477, 601
BmrFI CCNGG 1 cut(s) 480
BmsI GCATC 1 cut(s) 171
BmtI GCTAGC 1 cut(s) 825
BpiI GAAGAC 2 cut(s) 84, 685
BpmI CTGGAG 1 cut(s) 52
BpuEI CTTGAG 1 cut(s) 411
BsaJI CCNNGG 3 cut(s) 471, 628, 771
Bsc4I CCNNNNNNNGG 3 cut(s) 551, 687, 688
BseBI CCWGG 1 cut(s) 480
BseDI CCNNGG 3 cut(s) 471, 628, 771
BseGI GGATG 2 cut(s) 162, 540
BseLI CCNNNNNNNGG 3 cut(s) 551, 687, 688
BseMII CTCAG 2 cut(s) 23, 319
BseRI GAGGAG 2 cut(s) 282, 414
BseXI GCAGC 2 cut(s) 342, 509
BseYI CCCAGC 1 cut(s) 149
BshFI GGCC 1 cut(s) 555
BsiHKAI GWGCWC 1 cut(s) 723
BslFI GGGAC 2 cut(s) 846, 903
BslI CCNNNNNNNGG 3 cut(s) 551, 687, 688
BsmAI GTCTC 1 cut(s) 30
BsmFI GGGAC 2 cut(s) 846, 903
BsnI GGCC 1 cut(s) 555
Bsp1286I GDGCHC 3 cut(s) 23, 466, 723
Bsp143I GATC 2 cut(s) 222, 828
Bsp19I CCATGG 1 cut(s) 471
BspACI CCGC 2 cut(s) 257, 545
BspANI GGCC 1 cut(s) 555
BspCNI CTCAG 2 cut(s) 22, 318
BspHI TCATGA 1 cut(s) 612
BspLI GGNNCC 2 cut(s) 477, 601
BspOI GCTAGC 1 cut(s) 825
BssECI CCNNGG 3 cut(s) 471, 628, 771
BssMI GATC 2 cut(s) 222, 828
BssT1I CCWWGG 2 cut(s) 471, 628
Bst2UI CCWGG 1 cut(s) 480
Bst4CI ACNGT 1 cut(s) 874
BstC8I GCNNGC 3 cut(s) 276, 330, 823
BstDEI CTNAG 2 cut(s) 9, 305
BstDSI CCRYGG 2 cut(s) 471, 771
BstF5I GGATG 2 cut(s) 162, 540
BstH2I RGCGCY 1 cut(s) 303
BstHHI GCGC 2 cut(s) 274, 302
BstKTI GATC 2 cut(s) 225, 831
BstMAI GTCTC 1 cut(s) 30
BstMBI GATC 2 cut(s) 222, 828
BstMWI GCNNNNNNNGC 5 cut(s) 27, 254, 263, 306, 329
BstNI CCWGG 1 cut(s) 480
BstNSI RCATGY 2 cut(s) 55, 422
BstSCI CCNGG 1 cut(s) 478
BstV1I GCAGC 2 cut(s) 342, 509
BstV2I GAAGAC 2 cut(s) 84, 685
BstXI CCANNNNNNTGG 1 cut(s) 210
BsuRI GGCC 1 cut(s) 555
BtgI CCRYGG 2 cut(s) 471, 771
BtsCI GGATG 2 cut(s) 162, 540
BtsIMutI CAGTG 1 cut(s) 325
Cac8I GCNNGC 3 cut(s) 276, 330, 823
CciI TCATGA 1 cut(s) 612
CfoI GCGC 2 cut(s) 274, 302
CsiI ACCWGGT 1 cut(s) 478
Csp6I GTAC 2 cut(s) 43, 875
CviAII CATG 6 cut(s) 52, 220, 419, 472, 613, 832
CviQI GTAC 2 cut(s) 43, 875
DdeI CTNAG 2 cut(s) 9, 305
DpnI GATC 2 cut(s) 224, 830
DpnII GATC 2 cut(s) 222, 828
EaeI YGGCCR 1 cut(s) 553
Eco130I CCWWGG 2 cut(s) 471, 628
Eco24I GRGCYC 2 cut(s) 23, 466
EcoRII CCWGG 1 cut(s) 478
EcoT14I CCWWGG 2 cut(s) 471, 628
EcoT22I ATGCAT 1 cut(s) 268
EcoT38I GRGCYC 2 cut(s) 23, 466
ErhI CCWWGG 2 cut(s) 471, 628
FaeI CATG 6 cut(s) 55, 223, 422, 475, 616, 835
FaqI GGGAC 2 cut(s) 846, 903
FatI CATG 6 cut(s) 51, 219, 418, 471, 612, 831
FauI CCCGC 1 cut(s) 552
FbaI TGATCA 2 cut(s) 222, 828
Fnu4HI GCNGC 3 cut(s) 258, 356, 498
FokI GGATG 2 cut(s) 149, 527
FriOI GRGCYC 2 cut(s) 23, 466
Fsp4HI GCNGC 3 cut(s) 258, 356, 498
FspBI CTAG 4 cut(s) 114, 284, 671, 822
GlaI GCGC 2 cut(s) 273, 301
GluI GCNGC 3 cut(s) 258, 356, 498
GsaI CCCAGC 1 cut(s) 153
GsuI CTGGAG 1 cut(s) 52
HaeII RGCGCY 1 cut(s) 303
HaeIII GGCC 1 cut(s) 555
HhaI GCGC 2 cut(s) 274, 302
Hin1II CATG 6 cut(s) 55, 223, 422, 475, 616, 835
Hin6I GCGC 2 cut(s) 272, 300
HinP1I GCGC 2 cut(s) 272, 300
HincII GTYRAC 1 cut(s) 648
HindII GTYRAC 1 cut(s) 648
HindIII AAGCTT 1 cut(s) 97
HinfI GANTC 5 cut(s) 7, 38, 370, 443, 899
HphI GGTGA 1 cut(s) 715
Hpy166II GTNNAC 3 cut(s) 574, 648, 801
Hpy188I TCNGA 3 cut(s) 18, 61, 167
Hpy188III TCNNGA 5 cut(s) 127, 428, 613, 657, 882
Hpy8I GTNNAC 3 cut(s) 574, 648, 801
HpyAV CCTTC 1 cut(s) 139
HpyCH4III ACNGT 1 cut(s) 874
HpyCH4IV ACGT 2 cut(s) 433, 650
HpyCH4V TGCA 3 cut(s) 266, 358, 497
HpyF10VI GCNNNNNNNGC 5 cut(s) 27, 254, 263, 306, 329
HpyF3I CTNAG 2 cut(s) 9, 305
HpySE526I ACGT 2 cut(s) 433, 650
Hsp92II CATG 6 cut(s) 55, 223, 422, 475, 616, 835
HspAI GCGC 2 cut(s) 272, 300
Ksp22I TGATCA 2 cut(s) 222, 828
Kzo9I GATC 2 cut(s) 222, 828
LmnI GCTCC 1 cut(s) 427
Lsp1109I GCAGC 2 cut(s) 342, 509
LweI GCATC 1 cut(s) 171
MabI ACCWGGT 1 cut(s) 478
MaeI CTAG 4 cut(s) 114, 284, 671, 822
MaeII ACGT 2 cut(s) 433, 650
MaeIII GTNAC 3 cut(s) 286, 448, 935
MalI GATC 2 cut(s) 224, 830
MboI GATC 2 cut(s) 222, 828
MboII GAAGA 5 cut(s) 84, 154, 685, 951, 954
MfeI CAATTG 1 cut(s) 408
MhlI GDGCHC 3 cut(s) 23, 466, 723
MlsI TGGCCA 1 cut(s) 555
MluCI AATT 6 cut(s) 250, 312, 408, 633, 708, 733
MluNI TGGCCA 1 cut(s) 555
MlyI GAGTC 2 cut(s) 32, 908
MmeI TCCRAC 1 cut(s) 927
MnlI CCTC 6 cut(s) 41, 67, 173, 303, 435, 942
Mox20I TGGCCA 1 cut(s) 555
Mph1103I ATGCAT 1 cut(s) 268
MscI TGGCCA 1 cut(s) 555
MseI TTAA 5 cut(s) 69, 344, 621, 837, 849
MslI CAYNNNNRTG 4 cut(s) 208, 728, 770, 921
Msp20I TGGCCA 1 cut(s) 555
MspR9I CCNGG 1 cut(s) 480
MunI CAATTG 1 cut(s) 408
MvaI CCWGG 1 cut(s) 480
MwoI GCNNNNNNNGC 5 cut(s) 27, 254, 263, 306, 329
NcoI CCATGG 1 cut(s) 471
NdeII GATC 2 cut(s) 222, 828
NheI GCTAGC 1 cut(s) 821
NlaIII CATG 6 cut(s) 55, 223, 422, 475, 616, 835
NlaIV GGNNCC 2 cut(s) 477, 601
NmuCI GTSAC 1 cut(s) 935
NsiI ATGCAT 1 cut(s) 268
NspI RCATGY 2 cut(s) 55, 422
OliI CACNNNNGTG 2 cut(s) 208, 770
PagI TCATGA 1 cut(s) 612
PfeI GAWTC 2 cut(s) 370, 443
PflFI GACNNNGTC 1 cut(s) 898
PkrI GCNGC 3 cut(s) 259, 357, 499
PleI GAGTC 2 cut(s) 32, 907
PpsI GAGTC 2 cut(s) 32, 907
Psp6I CCWGG 1 cut(s) 478
PspFI CCCAGC 1 cut(s) 149
PspGI CCWGG 1 cut(s) 478
PspN4I GGNNCC 2 cut(s) 477, 601
PsyI GACNNNGTC 1 cut(s) 898
RsaI GTAC 2 cut(s) 44, 876
RsaNI GTAC 2 cut(s) 43, 875
RseI CAYNNNNRTG 4 cut(s) 208, 728, 770, 921
SaqAI TTAA 5 cut(s) 69, 344, 621, 837, 849
SatI GCNGC 3 cut(s) 258, 356, 498
Sau3AI GATC 2 cut(s) 222, 828
SchI GAGTC 2 cut(s) 32, 908
ScrFI CCNGG 1 cut(s) 480
SduI GDGCHC 3 cut(s) 23, 466, 723
SexAI ACCWGGT 1 cut(s) 478
SfaNI GCATC 1 cut(s) 171
SmiMI CAYNNNNRTG 4 cut(s) 208, 728, 770, 921
SmlI CTYRAG 1 cut(s) 426
SmoI CTYRAG 1 cut(s) 426
SpeI ACTAGT 2 cut(s) 283, 670
Sse9I AATT 6 cut(s) 250, 312, 408, 633, 708, 733
SsiI CCGC 2 cut(s) 257, 545
SspMI CTAG 4 cut(s) 114, 284, 671, 822
StyD4I CCNGG 1 cut(s) 478
StyI CCWWGG 2 cut(s) 471, 628
TaaI ACNGT 1 cut(s) 874
TaiI ACGT 2 cut(s) 436, 653
TaqII GACCGA 1 cut(s) 598
TasI AATT 6 cut(s) 250, 312, 408, 633, 708, 733
TatI WGTACW 1 cut(s) 874
TauI GCSGC 1 cut(s) 260
TfiI GAWTC 2 cut(s) 370, 443
Tru1I TTAA 5 cut(s) 69, 344, 621, 837, 849
Tru9I TTAA 5 cut(s) 69, 344, 621, 837, 849
TscAI CASTG 1 cut(s) 325
TseFI GTSAC 1 cut(s) 935
TseI GCWGC 2 cut(s) 355, 497
Tsp45I GTSAC 1 cut(s) 935
TspDTI ATGAA 5 cut(s) 109, 177, 529, 677, 746
TspRI CASTG 1 cut(s) 325
Tth111I GACNNNGTC 1 cut(s) 898
XceI RCATGY 2 cut(s) 55, 422
XspI CTAG 4 cut(s) 114, 284, 671, 822
Zsp2I ATGCAT 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.