Rmu_ssc0000286.1_g000017

Acts as a Mg(2 ) transporter. Can also transport other divalent cations such as Fe(2 ), Sr(2 ), Ba(2 ), Mn(2 ) and Co(2 ) but to a much less extent than Mg(2 )

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000286.1
Physical Location & Seq
Forward (+)
104559 .. 111502
6944 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000286.1_g000017.1.cds

Sequence Viewer

Length: 1056 bp
atggcgactcaggttcagagcccgatgagctggagagactcgtacagaggcatgtcctctgacaacattaagggtttggttcttgctttgtcttcaagcttgtttattggtgctagtttcatagtcaagaaaaagggcttgaagaaggctggggcttctggcatccgagcaggagtgggaggatattcatacctatatgagccactttggtgggtgggcatgataacaatgattgtaggagaagttgctaattttgcggcttatgcatttgcgccagctatactagtaactcctcttggcgctctcagcataattatcagtgctgtgcttgcacatattattttaagggagaagctgcatatctttgggattcttggttgtgctttatgtgttgttggttctacaacaattgttttacatgctcctcaagaacgtgagattgaatctgtaacagaagtttgggctcttgccatggaaccaggttttctattttatgcagctcttgtcataactgctgtttttatacttatattccacttcatcccgcaatatggccagacacacataatggtttacattggagtttgttcgcttgtaggttccttgtcggtcatgagtgttaaagcacttggaattgctctgaagttgacgttatccggaatgaatcaactagtctatccccaaacttgggtcttcactttagttgtaattacttgtgtgctcacccaaatgaattacttgaacaaggcacttgatacattcaacacagccgtggtatctcctatatactatgttatgttcacatcactaactattctggctagcgtgatcatgtttaaggattgggacagacagagtccaacacaagttatcacagaaatgtgtggctttgtgactatacttggaggaacttttcttcttcacagaaccaaggatatgactgacggtttgacaacatcaatgtcctctttgcgactatctaagcatgcagaggaggatggaatggatggtgctgaaggcatcccactcaggcggcaggatagctcaagatcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

351

Amino Acids

38.25

Weight (kDa)

8.21

Isoelectric Point (pI)

41.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 656
AciI CCGC 3 cut(s) 257, 545, 1033
AcoI YGGCCR 1 cut(s) 553
AcuI CTGAAG 2 cut(s) 662, 1035
AfaI GTAC 1 cut(s) 44
AfiI CCNNNNNNNGG 3 cut(s) 551, 687, 688
AgsI TTSAA 5 cut(s) 96, 142, 443, 742, 763
AhlI ACTAGT 2 cut(s) 283, 670
AjnI CCWGG 1 cut(s) 478
AleI CACNNNNGTG 2 cut(s) 208, 770
AluBI AGCT 6 cut(s) 30, 99, 278, 355, 500, 1044
AluI AGCT 6 cut(s) 30, 99, 278, 355, 500, 1044
Alw21I GWGCWC 1 cut(s) 723
Alw26I GTCTC 1 cut(s) 30
Aor13HI TCCGGA 1 cut(s) 656
AoxI GGCC 1 cut(s) 553
ApeKI GCWGC 2 cut(s) 355, 497
ArsI GACNNNNNNTTYG 2 cut(s) 931, 963
AspLEI GCGC 2 cut(s) 274, 302
AsuHPI GGTGA 1 cut(s) 715
AsuNHI GCTAGC 1 cut(s) 821
BalI TGGCCA 1 cut(s) 555
BanII GRGCYC 2 cut(s) 23, 466
BbsI GAAGAC 2 cut(s) 84, 685
Bbv12I GWGCWC 1 cut(s) 723
BbvI GCAGC 2 cut(s) 342, 509
BccI CCATC 2 cut(s) 992, 1001
BceAI ACGGC 1 cut(s) 755
BciT130I CCWGG 1 cut(s) 480
BclI TGATCA 1 cut(s) 828
BcoDI GTCTC 1 cut(s) 30
BcuI ACTAGT 2 cut(s) 283, 670
BfaI CTAG 4 cut(s) 114, 284, 671, 822
BfoI RGCGCY 1 cut(s) 303
BisI GCNGC 4 cut(s) 258, 356, 498, 1034
BlsI GCNGC 4 cut(s) 259, 357, 499, 1035
Bme1390I CCNGG 1 cut(s) 480
BmiI GGNNCC 2 cut(s) 477, 601
BmrFI CCNGG 1 cut(s) 480
BmsI GCATC 2 cut(s) 171, 1029
BmtI GCTAGC 1 cut(s) 825
BpiI GAAGAC 2 cut(s) 84, 685
BpmI CTGGAG 1 cut(s) 52
BpuEI CTTGAG 2 cut(s) 411, 1030
BsaJI CCNNGG 3 cut(s) 471, 771, 930
BsaWI WCCGGW 1 cut(s) 656
Bsc4I CCNNNNNNNGG 3 cut(s) 551, 687, 688
BseAI TCCGGA 1 cut(s) 656
BseBI CCWGG 1 cut(s) 480
BseDI CCNNGG 3 cut(s) 471, 771, 930
BseGI GGATG 5 cut(s) 162, 540, 1003, 1012, 1020
BseLI CCNNNNNNNGG 3 cut(s) 551, 687, 688
BseMII CTCAG 3 cut(s) 23, 319, 1042
BseRI GAGGAG 3 cut(s) 282, 414, 1007
BseXI GCAGC 2 cut(s) 342, 509
BseYI CCCAGC 1 cut(s) 149
BshFI GGCC 1 cut(s) 555
BsiHKAI GWGCWC 1 cut(s) 723
BsiSI CCGG 1 cut(s) 657
BslFI GGGAC 1 cut(s) 860
BslI CCNNNNNNNGG 3 cut(s) 551, 687, 688
BsmAI GTCTC 1 cut(s) 30
BsmFI GGGAC 1 cut(s) 860
BsnI GGCC 1 cut(s) 555
Bsp1286I GDGCHC 3 cut(s) 23, 466, 723
Bsp13I TCCGGA 1 cut(s) 656
Bsp143I GATC 2 cut(s) 828, 1049
Bsp19I CCATGG 1 cut(s) 471
BspACI CCGC 3 cut(s) 257, 545, 1033
BspANI GGCC 1 cut(s) 555
BspCNI CTCAG 3 cut(s) 22, 318, 1041
BspEI TCCGGA 1 cut(s) 656
BspHI TCATGA 2 cut(s) 612, 1052
BspLI GGNNCC 2 cut(s) 477, 601
BspOI GCTAGC 1 cut(s) 825
BssECI CCNNGG 3 cut(s) 471, 771, 930
BssMI GATC 2 cut(s) 828, 1049
BssT1I CCWWGG 2 cut(s) 471, 930
Bst2UI CCWGG 1 cut(s) 480
Bst4CI ACNGT 1 cut(s) 947
BstC8I GCNNGC 4 cut(s) 276, 330, 823, 987
BstDEI CTNAG 4 cut(s) 9, 305, 981, 1028
BstDSI CCRYGG 2 cut(s) 471, 771
BstF5I GGATG 5 cut(s) 162, 540, 1003, 1012, 1020
BstH2I RGCGCY 1 cut(s) 303
BstHHI GCGC 2 cut(s) 274, 302
BstKTI GATC 2 cut(s) 831, 1052
BstMAI GTCTC 1 cut(s) 30
BstMBI GATC 2 cut(s) 828, 1049
BstMWI GCNNNNNNNGC 5 cut(s) 27, 254, 263, 306, 329
BstNI CCWGG 1 cut(s) 480
BstNSI RCATGY 3 cut(s) 55, 422, 989
BstSCI CCNGG 1 cut(s) 478
BstV1I GCAGC 2 cut(s) 342, 509
BstV2I GAAGAC 2 cut(s) 84, 685
BstXI CCANNNNNNTGG 1 cut(s) 210
BsuRI GGCC 1 cut(s) 555
BtgI CCRYGG 2 cut(s) 471, 771
BtsCI GGATG 5 cut(s) 162, 540, 1003, 1012, 1020
BtsIMutI CAGTG 1 cut(s) 325
Cac8I GCNNGC 4 cut(s) 276, 330, 823, 987
CciI TCATGA 2 cut(s) 612, 1052
CfoI GCGC 2 cut(s) 274, 302
CsiI ACCWGGT 1 cut(s) 478
Csp6I GTAC 1 cut(s) 43
CviAII CATG 8 cut(s) 52, 220, 419, 472, 613, 832, 986, 1053
CviQI GTAC 1 cut(s) 43
DdeI CTNAG 4 cut(s) 9, 305, 981, 1028
DpnI GATC 2 cut(s) 830, 1051
DpnII GATC 2 cut(s) 828, 1049
EaeI YGGCCR 1 cut(s) 553
Eco130I CCWWGG 2 cut(s) 471, 930
Eco24I GRGCYC 2 cut(s) 23, 466
Eco57I CTGAAG 2 cut(s) 662, 1035
EcoRII CCWGG 1 cut(s) 478
EcoT14I CCWWGG 2 cut(s) 471, 930
EcoT22I ATGCAT 1 cut(s) 268
EcoT38I GRGCYC 2 cut(s) 23, 466
ErhI CCWWGG 2 cut(s) 471, 930
FaeI CATG 8 cut(s) 55, 223, 422, 475, 616, 835, 989, 1056
FaqI GGGAC 1 cut(s) 860
FatI CATG 8 cut(s) 51, 219, 418, 471, 612, 831, 985, 1052
FauI CCCGC 1 cut(s) 552
FbaI TGATCA 1 cut(s) 828
Fnu4HI GCNGC 4 cut(s) 258, 356, 498, 1034
FokI GGATG 5 cut(s) 149, 527, 1007, 1010, 1019
FriOI GRGCYC 2 cut(s) 23, 466
Fsp4HI GCNGC 4 cut(s) 258, 356, 498, 1034
FspBI CTAG 4 cut(s) 114, 284, 671, 822
GlaI GCGC 2 cut(s) 273, 301
GluI GCNGC 4 cut(s) 258, 356, 498, 1034
GsaI CCCAGC 1 cut(s) 153
GsuI CTGGAG 1 cut(s) 52
HaeII RGCGCY 1 cut(s) 303
HaeIII GGCC 1 cut(s) 555
HapII CCGG 1 cut(s) 657
HhaI GCGC 2 cut(s) 274, 302
Hin1II CATG 8 cut(s) 55, 223, 422, 475, 616, 835, 989, 1056
Hin6I GCGC 2 cut(s) 272, 300
HinP1I GCGC 2 cut(s) 272, 300
HincII GTYRAC 1 cut(s) 648
HindII GTYRAC 1 cut(s) 648
HindIII AAGCTT 1 cut(s) 97
HinfI GANTC 6 cut(s) 7, 38, 370, 443, 664, 856
HpaII CCGG 1 cut(s) 657
HphI GGTGA 1 cut(s) 715
Hpy166II GTNNAC 3 cut(s) 574, 648, 801
Hpy188I TCNGA 4 cut(s) 18, 61, 167, 642
Hpy188III TCNNGA 6 cut(s) 127, 428, 613, 657, 1047, 1053
Hpy8I GTNNAC 3 cut(s) 574, 648, 801
HpyAV CCTTC 2 cut(s) 139, 1010
HpyCH4III ACNGT 1 cut(s) 947
HpyCH4IV ACGT 2 cut(s) 433, 650
HpyCH4V TGCA 5 cut(s) 266, 332, 358, 497, 989
HpyF10VI GCNNNNNNNGC 5 cut(s) 27, 254, 263, 306, 329
HpyF3I CTNAG 4 cut(s) 9, 305, 981, 1028
HpySE526I ACGT 2 cut(s) 433, 650
Hsp92II CATG 8 cut(s) 55, 223, 422, 475, 616, 835, 989, 1056
HspAI GCGC 2 cut(s) 272, 300
Kpn2I TCCGGA 1 cut(s) 656
Ksp22I TGATCA 1 cut(s) 828
Kzo9I GATC 2 cut(s) 828, 1049
LmnI GCTCC 1 cut(s) 427
Lsp1109I GCAGC 2 cut(s) 342, 509
LweI GCATC 2 cut(s) 171, 1029
MabI ACCWGGT 1 cut(s) 478
MaeI CTAG 4 cut(s) 114, 284, 671, 822
MaeII ACGT 2 cut(s) 433, 650
MaeIII GTNAC 3 cut(s) 286, 448, 892
MalI GATC 2 cut(s) 830, 1051
MboI GATC 2 cut(s) 828, 1049
MboII GAAGA 5 cut(s) 84, 154, 685, 908, 911
MfeI CAATTG 1 cut(s) 408
MhlI GDGCHC 3 cut(s) 23, 466, 723
MlsI TGGCCA 1 cut(s) 555
MluCI AATT 6 cut(s) 250, 312, 408, 633, 708, 733
MluNI TGGCCA 1 cut(s) 555
MlyI GAGTC 2 cut(s) 32, 865
MmeI TCCRAC 1 cut(s) 884
MnlI CCTC 9 cut(s) 41, 67, 173, 303, 435, 899, 976, 985, 988
Mox20I TGGCCA 1 cut(s) 555
Mph1103I ATGCAT 1 cut(s) 268
MroI TCCGGA 1 cut(s) 656
MscI TGGCCA 1 cut(s) 555
MseI TTAA 4 cut(s) 69, 344, 621, 837
MslI CAYNNNNRTG 4 cut(s) 208, 728, 770, 878
Msp20I TGGCCA 1 cut(s) 555
MspI CCGG 1 cut(s) 657
MspR9I CCNGG 1 cut(s) 480
MunI CAATTG 1 cut(s) 408
MvaI CCWGG 1 cut(s) 480
MwoI GCNNNNNNNGC 5 cut(s) 27, 254, 263, 306, 329
NcoI CCATGG 1 cut(s) 471
NdeII GATC 2 cut(s) 828, 1049
NheI GCTAGC 1 cut(s) 821
NlaIII CATG 8 cut(s) 55, 223, 422, 475, 616, 835, 989, 1056
NlaIV GGNNCC 2 cut(s) 477, 601
NmuCI GTSAC 1 cut(s) 892
NsiI ATGCAT 1 cut(s) 268
NspI RCATGY 3 cut(s) 55, 422, 989
OliI CACNNNNGTG 2 cut(s) 208, 770
PaeI GCATGC 1 cut(s) 989
PagI TCATGA 2 cut(s) 612, 1052
PfeI GAWTC 3 cut(s) 370, 443, 664
PflFI GACNNNGTC 1 cut(s) 855
PkrI GCNGC 4 cut(s) 259, 357, 499, 1035
PleI GAGTC 2 cut(s) 32, 864
PpsI GAGTC 2 cut(s) 32, 864
Psp6I CCWGG 1 cut(s) 478
PspFI CCCAGC 1 cut(s) 149
PspGI CCWGG 1 cut(s) 478
PspN4I GGNNCC 2 cut(s) 477, 601
PsyI GACNNNGTC 1 cut(s) 855
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
RseI CAYNNNNRTG 4 cut(s) 208, 728, 770, 878
SaqAI TTAA 4 cut(s) 69, 344, 621, 837
SatI GCNGC 4 cut(s) 258, 356, 498, 1034
Sau3AI GATC 2 cut(s) 828, 1049
SchI GAGTC 2 cut(s) 32, 865
ScrFI CCNGG 1 cut(s) 480
SduI GDGCHC 3 cut(s) 23, 466, 723
SexAI ACCWGGT 1 cut(s) 478
SfaNI GCATC 2 cut(s) 171, 1029
SmiMI CAYNNNNRTG 4 cut(s) 208, 728, 770, 878
SmlI CTYRAG 2 cut(s) 426, 1045
SmoI CTYRAG 2 cut(s) 426, 1045
SpeI ACTAGT 2 cut(s) 283, 670
SphI GCATGC 1 cut(s) 989
Sse9I AATT 6 cut(s) 250, 312, 408, 633, 708, 733
SsiI CCGC 3 cut(s) 257, 545, 1033
SspMI CTAG 4 cut(s) 114, 284, 671, 822
StyD4I CCNGG 1 cut(s) 478
StyI CCWWGG 2 cut(s) 471, 930
TaaI ACNGT 1 cut(s) 947
TaiI ACGT 2 cut(s) 436, 653
TaqII GACCGA 1 cut(s) 598
TasI AATT 6 cut(s) 250, 312, 408, 633, 708, 733
TauI GCSGC 2 cut(s) 260, 1036
TfiI GAWTC 3 cut(s) 370, 443, 664
Tru1I TTAA 4 cut(s) 69, 344, 621, 837
Tru9I TTAA 4 cut(s) 69, 344, 621, 837
TscAI CASTG 1 cut(s) 325
TseFI GTSAC 1 cut(s) 892
TseI GCWGC 2 cut(s) 355, 497
Tsp45I GTSAC 1 cut(s) 892
TspDTI ATGAA 5 cut(s) 109, 177, 529, 677, 746
TspRI CASTG 1 cut(s) 325
Tth111I GACNNNGTC 1 cut(s) 855
XceI RCATGY 3 cut(s) 55, 422, 989
XspI CTAG 4 cut(s) 114, 284, 671, 822
Zsp2I ATGCAT 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.