Rorug07G0197200

Acts as a Mg(2 ) transporter. Can also transport other divalent cations such as Fe(2 ), Sr(2 ), Ba(2 ), Mn(2 ) and Co(2 ) but to a much less extent than Mg(2 )

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
17063956 .. 17065924
1969 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0197200.1

Sequence Viewer

Length: 420 bp
ATGGATTCCAAGAGATGTTCCACCGTTGCTCTCTTCCTCTCCATCAACCTTCTCTTTTGGGCCCTAGCAAGTGGTTGTTTCACTTGCTCTCAGCCTCATCCCATCACAACACCTAAGCCAATCAAAACCCCTATTCCCAGTGCCGGTTCTGCTGCCACAAAGAGCTGCCCTAGGGATACCCTAAAGTTGGGGGTATGTGCCAAGTTGCTGAATGGGGCGGTTGGGGCAGTTGTCGGGAGCCCTCCGGATACACCTTGCTGTGCTGTCCTTCATGGACTTCTGGATCTTGAAGTTGCTGTGTGCCTTTGCACTGCCATTAAGGCCAACATTCTGGGTATCAACCTTAACATCCCTATTTCGTTGAGCTTGCTCCTTGACGGCTGCGCAAAGAAGTTCCCTCCAGGCTTCCAATGTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

139

Amino Acids

14.32

Weight (kDa)

8.69

Isoelectric Point (pI)

25.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrophob_seed PF14547 56 - 139 3.4e-23 Hydrophobic seed protein
Tryp_alpha_amyl PF00234 56 - 138 5.2e-15 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 385
AccIII TCCGGA 1 cut(s) 244
AciI CCGC 1 cut(s) 218
AclWI GGATC 1 cut(s) 291
AfiI CCNNNNNNNGG 2 cut(s) 143, 187
AgsI TTSAA 1 cut(s) 290
AjnI CCWGG 1 cut(s) 400
AluBI AGCT 2 cut(s) 165, 366
AluI AGCT 2 cut(s) 165, 366
AlwI GGATC 1 cut(s) 291
Aor13HI TCCGGA 1 cut(s) 244
AoxI GGCC 2 cut(s) 60, 321
ApaI GGGCCC 1 cut(s) 64
ApeKI GCWGC 3 cut(s) 152, 165, 381
AspA2I CCTAGG 1 cut(s) 170
AspLEI GCGC 1 cut(s) 386
AspS9I GGNCC 2 cut(s) 60, 61
AvrII CCTAGG 1 cut(s) 170
BaeGI GKGCMC 1 cut(s) 64
BanII GRGCYC 2 cut(s) 64, 242
BbvI GCAGC 3 cut(s) 139, 152, 368
BccI CCATC 2 cut(s) 50, 110
BceAI ACGGC 1 cut(s) 394
BciT130I CCWGG 1 cut(s) 402
BciVI GTATCC 2 cut(s) 169, 241
BfaI CTAG 2 cut(s) 65, 171
BfuI GTATCC 2 cut(s) 169, 241
BglI GCCNNNNNGGC 1 cut(s) 320
BisI GCNGC 3 cut(s) 153, 166, 382
BlnI CCTAGG 1 cut(s) 170
BlsI GCNGC 3 cut(s) 154, 167, 383
Bme1390I CCNGG 1 cut(s) 402
BmgT120I GGNCC 2 cut(s) 60, 61
BmiI GGNNCC 2 cut(s) 62, 239
BmrFI CCNGG 1 cut(s) 402
BmrI ACTGGG 1 cut(s) 132
BmuI ACTGGG 1 cut(s) 132
BpmI CTGGAG 1 cut(s) 384
Bpu10I CCTNAGC 1 cut(s) 114
BsaJI CCNNGG 1 cut(s) 170
BsaWI WCCGGW 1 cut(s) 244
Bsc4I CCNNNNNNNGG 2 cut(s) 143, 187
Bse118I RCCGGY 1 cut(s) 143
Bse1I ACTGG 1 cut(s) 138
BseAI TCCGGA 1 cut(s) 244
BseBI CCWGG 1 cut(s) 402
BseDI CCNNGG 1 cut(s) 170
BseGI GGATG 2 cut(s) 97, 348
BseLI CCNNNNNNNGG 2 cut(s) 143, 187
BseMII CTCAG 1 cut(s) 104
BseNI ACTGG 1 cut(s) 138
BseSI GKGCMC 1 cut(s) 64
BseXI GCAGC 3 cut(s) 139, 152, 368
BshFI GGCC 2 cut(s) 62, 323
BsiSI CCGG 2 cut(s) 144, 245
BslI CCNNNNNNNGG 2 cut(s) 143, 187
BsnI GGCC 2 cut(s) 62, 323
Bsp120I GGGCCC 1 cut(s) 60
Bsp1286I GDGCHC 2 cut(s) 64, 242
Bsp13I TCCGGA 1 cut(s) 244
Bsp143I GATC 1 cut(s) 283
BspACI CCGC 1 cut(s) 218
BspANI GGCC 2 cut(s) 62, 323
BspCNI CTCAG 1 cut(s) 103
BspEI TCCGGA 1 cut(s) 244
BspLI GGNNCC 2 cut(s) 62, 239
BspPI GGATC 1 cut(s) 291
BsrFI RCCGGY 1 cut(s) 143
BsrI ACTGG 1 cut(s) 138
BssAI RCCGGY 1 cut(s) 143
BssECI CCNNGG 1 cut(s) 170
BssMI GATC 1 cut(s) 283
BssT1I CCWWGG 1 cut(s) 170
Bst2UI CCWGG 1 cut(s) 402
Bst4CI ACNGT 1 cut(s) 25
Bst6I CTCTTC 1 cut(s) 38
BstC8I GCNNGC 1 cut(s) 368
BstDEI CTNAG 2 cut(s) 90, 114
BstF5I GGATG 2 cut(s) 97, 348
BstHHI GCGC 1 cut(s) 386
BstKTI GATC 1 cut(s) 286
BstMBI GATC 1 cut(s) 283
BstMWI GCNNNNNNNGC 3 cut(s) 149, 224, 320
BstNI CCWGG 1 cut(s) 402
BstSCI CCNGG 1 cut(s) 400
BstSLI GKGCMC 1 cut(s) 64
BstV1I GCAGC 3 cut(s) 139, 152, 368
BstX2I RGATCY 1 cut(s) 283
BstXI CCANNNNNNTGG 1 cut(s) 331
BstYI RGATCY 1 cut(s) 283
BsuI GTATCC 2 cut(s) 169, 241
BsuRI GGCC 2 cut(s) 62, 323
BtsCI GGATG 2 cut(s) 97, 348
BtsI GCAGTG 1 cut(s) 309
BtsIMutI CAGTG 2 cut(s) 145, 309
Cac8I GCNNGC 1 cut(s) 368
CfoI GCGC 1 cut(s) 386
Cfr10I RCCGGY 1 cut(s) 143
Cfr13I GGNCC 2 cut(s) 60, 61
CviAII CATG 1 cut(s) 272
CviJI RGCY 9 cut(s) 62, 94, 118, 165, 240, 323, 366, 381, 405
CviKI_1 RGCY 9 cut(s) 62, 94, 118, 165, 240, 323, 366, 381, 405
DdeI CTNAG 2 cut(s) 90, 114
DpnI GATC 1 cut(s) 285
DpnII GATC 1 cut(s) 283
Eam1104I CTCTTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 38
Eco130I CCWWGG 1 cut(s) 170
Eco24I GRGCYC 2 cut(s) 64, 242
EcoO109I RGGNCCY 1 cut(s) 61
EcoRII CCWGG 1 cut(s) 400
EcoT14I CCWWGG 1 cut(s) 170
EcoT38I GRGCYC 2 cut(s) 64, 242
ErhI CCWWGG 1 cut(s) 170
FaeI CATG 1 cut(s) 275
FaiI YATR 3 cut(s) 196, 273, 418
FatI CATG 1 cut(s) 271
Fnu4HI GCNGC 3 cut(s) 153, 166, 382
FokI GGATG 2 cut(s) 84, 335
FriOI GRGCYC 2 cut(s) 64, 242
Fsp4HI GCNGC 3 cut(s) 153, 166, 382
FspBI CTAG 2 cut(s) 65, 171
FspI TGCGCA 1 cut(s) 385
GlaI GCGC 1 cut(s) 385
GluI GCNGC 3 cut(s) 153, 166, 382
GsuI CTGGAG 1 cut(s) 384
HaeIII GGCC 2 cut(s) 62, 323
HapII CCGG 2 cut(s) 144, 245
HhaI GCGC 1 cut(s) 386
Hin1II CATG 1 cut(s) 275
Hin6I GCGC 1 cut(s) 384
HinP1I GCGC 1 cut(s) 384
HinfI GANTC 1 cut(s) 5
HpaII CCGG 2 cut(s) 144, 245
Hpy188III TCNNGA 4 cut(s) 235, 245, 281, 287
HpyAV CCTTC 2 cut(s) 59, 278
HpyCH4III ACNGT 1 cut(s) 25
HpyCH4V TGCA 2 cut(s) 309, 416
HpyF10VI GCNNNNNNNGC 3 cut(s) 149, 224, 320
HpyF3I CTNAG 2 cut(s) 90, 114
Hsp92II CATG 1 cut(s) 275
HspAI GCGC 1 cut(s) 384
Kpn2I TCCGGA 1 cut(s) 244
Kzo9I GATC 1 cut(s) 283
LmnI GCTCC 2 cut(s) 237, 375
LpnPI CCDG 7 cut(s) 151, 157, 258, 266, 317, 387, 414
Lsp1109I GCAGC 3 cut(s) 139, 152, 368
MaeI CTAG 2 cut(s) 65, 171
MalI GATC 1 cut(s) 285
MboI GATC 1 cut(s) 283
MboII GAAGA 1 cut(s) 25
MflI RGATCY 1 cut(s) 283
MhlI GDGCHC 2 cut(s) 64, 242
MnlI CCTC 4 cut(s) 47, 105, 252, 408
MroI TCCGGA 1 cut(s) 244
MseI TTAA 2 cut(s) 318, 345
MspI CCGG 2 cut(s) 144, 245
MspR9I CCNGG 1 cut(s) 402
MvaI CCWGG 1 cut(s) 402
MwoI GCNNNNNNNGC 3 cut(s) 149, 224, 320
NdeII GATC 1 cut(s) 283
NlaIII CATG 1 cut(s) 275
NlaIV GGNNCC 2 cut(s) 62, 239
NsbI TGCGCA 1 cut(s) 385
PfeI GAWTC 1 cut(s) 5
PkrI GCNGC 3 cut(s) 154, 167, 383
Psp6I CCWGG 1 cut(s) 400
PspGI CCWGG 1 cut(s) 400
PspN4I GGNNCC 2 cut(s) 62, 239
PspOMI GGGCCC 1 cut(s) 60
PspPI GGNCC 2 cut(s) 60, 61
PsuI RGATCY 1 cut(s) 283
SaqAI TTAA 2 cut(s) 318, 345
SatI GCNGC 3 cut(s) 153, 166, 382
Sau3AI GATC 1 cut(s) 283
Sau96I GGNCC 2 cut(s) 60, 61
ScrFI CCNGG 1 cut(s) 402
SduI GDGCHC 2 cut(s) 64, 242
SetI ASST 6 cut(s) 51, 115, 167, 256, 345, 368
SsiI CCGC 1 cut(s) 218
SspMI CTAG 2 cut(s) 65, 171
StyD4I CCNGG 1 cut(s) 400
StyI CCWWGG 1 cut(s) 170
TaaI ACNGT 1 cut(s) 25
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 2 cut(s) 318, 345
Tru9I TTAA 2 cut(s) 318, 345
TscAI CASTG 2 cut(s) 145, 316
TseI GCWGC 3 cut(s) 152, 165, 381
TspDTI ATGAA 1 cut(s) 260
TspRI CASTG 2 cut(s) 145, 316
XmaJI CCTAGG 1 cut(s) 170
XspI CTAG 2 cut(s) 65, 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.