RchiOBHm_Chr7g0220851

Acts as a Mg(2 ) transporter. Can also transport other divalent cations such as Fe(2 ), Sr(2 ), Ba(2 ), Mn(2 ) and Co(2 ) but to a much less extent than Mg(2 )

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0008936
Physical Location & Seq
Reverse (-)
41732743 .. 41740459
7717 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19765

Sequence Viewer

Length: 1056 bp
ATGGCGACTCAGGTTCAGAGCCCGATGAGCTGGAGAGACTCGTACAGAGGCATGTCCTCTGACAACATTAAGGGTTTGGTTCTTGCTTTGTCTTCAAGCTTGTTCATTGGTGCTAGTTTCATAGTCAAGAAGAAGGGCTTGAAGAAGGCTGGGGCTTCTGGCATCCGAGCAGGAGTGGGAGGATATTCATACCTATATGAGCCACTTTGGTGGGTGGGCATGATAACAATGATTGTGGGAGAAGTTGCTAATTTTGCGGCTTATGCATTTGCGCCAGCTATACTAGTAACTCCTCTTGGCGCTCTCAGCATAATTATCAGTGCTGTGCTTGCACATATTATTTTAAGGGAGAAGCTGCATATCTTTGGGATTCTTGGTTGTGCTTTATGTGTTGTTGGTTCTACAACAATTGTTTTACATGCTCCTCAAGAACGTGAGATTGAATCTGTAACAGAAGTTTGGGCTCTTGCCATGGAACCAGGTTTTCTATTTTATGCAGCTCTTGTCATAACTGCTGTTTTTATACTTATATTCCACTTCATCCCGCAATATGGCCAGACACACATAATGGTTTACATTGGAGTTTGTTCGCTTGTAGGTTCCTTGTCGGTCATGAGTGTTAAAGCACTTGGAATTGCTCTGAAGTTGACATTATCCGGAATGAATCAACTTGTCTATCCCCAAACTTGGGTCTTCACTTTAGTTGTAATTACTTGTGTGCTCACCCAAATGAATTACTTGAACAAGGCACTTGATACATTCAACACAGCCGTGGTATCTCCTATATACTATGTTATGTTCACATCACTAACTATTCTGGCTAGCGTGATCATGTTTAAGGATTGGGACAGACAGAGTCCAACACAAGTTATCACAGAAATGTGTGGCTTTGTGACTATACTTGGAGGAACTTTTCTTCTTCACAGAACAAAGGATATGACTGACGGTTTGACAACATCAATGTCCTCATTGCGACTATCTAAGCATGCAGAGGAGGATGGAATGGATGGTGCTGAAGGCATCCCACTCAGGCGGCAGGATAGCTCAAGATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mg_trans_NIPA

Protein Analysis

351

Amino Acids

38.25

Weight (kDa)

8.21

Isoelectric Point (pI)

41.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mg_trans_NIPA PF05653 21 - 313 1e-135 Magnesium transporter NIPA
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 656
AciI CCGC 3 cut(s) 257, 545, 1033
AcoI YGGCCR 1 cut(s) 553
AcuI CTGAAG 2 cut(s) 662, 1035
AfaI GTAC 1 cut(s) 44
AfiI CCNNNNNNNGG 3 cut(s) 551, 687, 688
AgsI TTSAA 5 cut(s) 96, 142, 443, 742, 763
AhlI ACTAGT 1 cut(s) 283
AjnI CCWGG 1 cut(s) 478
AleI CACNNNNGTG 2 cut(s) 208, 770
AluBI AGCT 6 cut(s) 30, 99, 278, 355, 500, 1044
AluI AGCT 6 cut(s) 30, 99, 278, 355, 500, 1044
Alw21I GWGCWC 1 cut(s) 723
Alw26I GTCTC 1 cut(s) 30
Aor13HI TCCGGA 1 cut(s) 656
AoxI GGCC 1 cut(s) 553
ApeKI GCWGC 2 cut(s) 355, 497
ArsI GACNNNNNNTTYG 2 cut(s) 931, 963
AspLEI GCGC 2 cut(s) 274, 302
AsuHPI GGTGA 1 cut(s) 715
AsuNHI GCTAGC 1 cut(s) 821
BalI TGGCCA 1 cut(s) 555
BanII GRGCYC 2 cut(s) 23, 466
BbsI GAAGAC 2 cut(s) 84, 685
Bbv12I GWGCWC 1 cut(s) 723
BbvI GCAGC 2 cut(s) 342, 509
BccI CCATC 2 cut(s) 992, 1001
BceAI ACGGC 1 cut(s) 755
BciT130I CCWGG 1 cut(s) 480
BclI TGATCA 1 cut(s) 828
BcoDI GTCTC 1 cut(s) 30
BcuI ACTAGT 1 cut(s) 283
BfaI CTAG 3 cut(s) 114, 284, 822
BfoI RGCGCY 1 cut(s) 303
BisI GCNGC 4 cut(s) 258, 356, 498, 1034
BlsI GCNGC 4 cut(s) 259, 357, 499, 1035
Bme1390I CCNGG 1 cut(s) 480
BmiI GGNNCC 2 cut(s) 477, 601
BmrFI CCNGG 1 cut(s) 480
BmsI GCATC 2 cut(s) 171, 1029
BmtI GCTAGC 1 cut(s) 825
BpiI GAAGAC 2 cut(s) 84, 685
BpmI CTGGAG 1 cut(s) 52
BpuEI CTTGAG 2 cut(s) 411, 1030
BsaJI CCNNGG 2 cut(s) 471, 771
BsaWI WCCGGW 1 cut(s) 656
Bsc4I CCNNNNNNNGG 3 cut(s) 551, 687, 688
Bse3DI GCAATG 1 cut(s) 968
BseAI TCCGGA 1 cut(s) 656
BseBI CCWGG 1 cut(s) 480
BseDI CCNNGG 2 cut(s) 471, 771
BseGI GGATG 5 cut(s) 162, 540, 1003, 1012, 1020
BseLI CCNNNNNNNGG 3 cut(s) 551, 687, 688
BseMI GCAATG 1 cut(s) 968
BseMII CTCAG 3 cut(s) 23, 319, 1042
BseRI GAGGAG 3 cut(s) 282, 414, 1007
BseXI GCAGC 2 cut(s) 342, 509
BseYI CCCAGC 1 cut(s) 149
BshFI GGCC 1 cut(s) 555
BsiHKAI GWGCWC 1 cut(s) 723
BsiSI CCGG 1 cut(s) 657
BslFI GGGAC 1 cut(s) 860
BslI CCNNNNNNNGG 3 cut(s) 551, 687, 688
BsmAI GTCTC 1 cut(s) 30
BsmFI GGGAC 1 cut(s) 860
BsnI GGCC 1 cut(s) 555
Bsp1286I GDGCHC 3 cut(s) 23, 466, 723
Bsp13I TCCGGA 1 cut(s) 656
Bsp143I GATC 2 cut(s) 828, 1049
Bsp19I CCATGG 1 cut(s) 471
BspACI CCGC 3 cut(s) 257, 545, 1033
BspANI GGCC 1 cut(s) 555
BspCNI CTCAG 3 cut(s) 22, 318, 1041
BspEI TCCGGA 1 cut(s) 656
BspHI TCATGA 2 cut(s) 612, 1052
BspLI GGNNCC 2 cut(s) 477, 601
BspOI GCTAGC 1 cut(s) 825
BsrDI GCAATG 1 cut(s) 968
BssECI CCNNGG 2 cut(s) 471, 771
BssMI GATC 2 cut(s) 828, 1049
BssT1I CCWWGG 1 cut(s) 471
Bst2UI CCWGG 1 cut(s) 480
Bst4CI ACNGT 1 cut(s) 947
BstC8I GCNNGC 4 cut(s) 276, 330, 823, 987
BstDEI CTNAG 4 cut(s) 9, 305, 981, 1028
BstDSI CCRYGG 2 cut(s) 471, 771
BstF5I GGATG 5 cut(s) 162, 540, 1003, 1012, 1020
BstH2I RGCGCY 1 cut(s) 303
BstHHI GCGC 2 cut(s) 274, 302
BstKTI GATC 2 cut(s) 831, 1052
BstMAI GTCTC 1 cut(s) 30
BstMBI GATC 2 cut(s) 828, 1049
BstMWI GCNNNNNNNGC 5 cut(s) 27, 254, 263, 306, 329
BstNI CCWGG 1 cut(s) 480
BstNSI RCATGY 3 cut(s) 55, 422, 989
BstSCI CCNGG 1 cut(s) 478
BstV1I GCAGC 2 cut(s) 342, 509
BstV2I GAAGAC 2 cut(s) 84, 685
BstXI CCANNNNNNTGG 1 cut(s) 210
BsuRI GGCC 1 cut(s) 555
BtgI CCRYGG 2 cut(s) 471, 771
BtsCI GGATG 5 cut(s) 162, 540, 1003, 1012, 1020
BtsIMutI CAGTG 1 cut(s) 325
Cac8I GCNNGC 4 cut(s) 276, 330, 823, 987
CciI TCATGA 2 cut(s) 612, 1052
CfoI GCGC 2 cut(s) 274, 302
CsiI ACCWGGT 1 cut(s) 478
Csp6I GTAC 1 cut(s) 43
CspCI CAANNNNNGTGG 2 cut(s) 216, 251
CviAII CATG 8 cut(s) 52, 220, 419, 472, 613, 832, 986, 1053
CviQI GTAC 1 cut(s) 43
DdeI CTNAG 4 cut(s) 9, 305, 981, 1028
DpnI GATC 2 cut(s) 830, 1051
DpnII GATC 2 cut(s) 828, 1049
EaeI YGGCCR 1 cut(s) 553
Eco130I CCWWGG 1 cut(s) 471
Eco24I GRGCYC 2 cut(s) 23, 466
Eco57I CTGAAG 2 cut(s) 662, 1035
EcoRII CCWGG 1 cut(s) 478
EcoT14I CCWWGG 1 cut(s) 471
EcoT22I ATGCAT 1 cut(s) 268
EcoT38I GRGCYC 2 cut(s) 23, 466
ErhI CCWWGG 1 cut(s) 471
FaeI CATG 8 cut(s) 55, 223, 422, 475, 616, 835, 989, 1056
FalI AAGNNNNNCTT 2 cut(s) 122, 154
FaqI GGGAC 1 cut(s) 860
FatI CATG 8 cut(s) 51, 219, 418, 471, 612, 831, 985, 1052
FauI CCCGC 1 cut(s) 552
FbaI TGATCA 1 cut(s) 828
Fnu4HI GCNGC 4 cut(s) 258, 356, 498, 1034
FokI GGATG 5 cut(s) 149, 527, 1007, 1010, 1019
FriOI GRGCYC 2 cut(s) 23, 466
Fsp4HI GCNGC 4 cut(s) 258, 356, 498, 1034
FspBI CTAG 3 cut(s) 114, 284, 822
GlaI GCGC 2 cut(s) 273, 301
GluI GCNGC 4 cut(s) 258, 356, 498, 1034
GsaI CCCAGC 1 cut(s) 153
GsuI CTGGAG 1 cut(s) 52
HaeII RGCGCY 1 cut(s) 303
HaeIII GGCC 1 cut(s) 555
HapII CCGG 1 cut(s) 657
HhaI GCGC 2 cut(s) 274, 302
Hin1II CATG 8 cut(s) 55, 223, 422, 475, 616, 835, 989, 1056
Hin6I GCGC 2 cut(s) 272, 300
HinP1I GCGC 2 cut(s) 272, 300
HincII GTYRAC 1 cut(s) 648
HindII GTYRAC 1 cut(s) 648
HindIII AAGCTT 1 cut(s) 97
HinfI GANTC 6 cut(s) 7, 38, 370, 443, 664, 856
HpaII CCGG 1 cut(s) 657
HphI GGTGA 1 cut(s) 715
Hpy166II GTNNAC 3 cut(s) 574, 648, 801
Hpy188I TCNGA 4 cut(s) 18, 61, 167, 642
Hpy188III TCNNGA 6 cut(s) 127, 428, 613, 657, 1047, 1053
Hpy8I GTNNAC 3 cut(s) 574, 648, 801
HpyAV CCTTC 3 cut(s) 127, 139, 1010
HpyCH4III ACNGT 1 cut(s) 947
HpyCH4IV ACGT 1 cut(s) 433
HpyCH4V TGCA 5 cut(s) 266, 332, 358, 497, 989
HpyF10VI GCNNNNNNNGC 5 cut(s) 27, 254, 263, 306, 329
HpyF3I CTNAG 4 cut(s) 9, 305, 981, 1028
HpySE526I ACGT 1 cut(s) 433
Hsp92II CATG 8 cut(s) 55, 223, 422, 475, 616, 835, 989, 1056
HspAI GCGC 2 cut(s) 272, 300
Kpn2I TCCGGA 1 cut(s) 656
Ksp22I TGATCA 1 cut(s) 828
Kzo9I GATC 2 cut(s) 828, 1049
LmnI GCTCC 1 cut(s) 427
Lsp1109I GCAGC 2 cut(s) 342, 509
LweI GCATC 2 cut(s) 171, 1029
MabI ACCWGGT 1 cut(s) 478
MaeI CTAG 3 cut(s) 114, 284, 822
MaeII ACGT 1 cut(s) 433
MaeIII GTNAC 3 cut(s) 286, 448, 892
MalI GATC 2 cut(s) 830, 1051
MboI GATC 2 cut(s) 828, 1049
MboII GAAGA 6 cut(s) 84, 142, 154, 685, 908, 911
MfeI CAATTG 1 cut(s) 408
MhlI GDGCHC 3 cut(s) 23, 466, 723
MlsI TGGCCA 1 cut(s) 555
MluCI AATT 6 cut(s) 250, 312, 408, 633, 708, 733
MluNI TGGCCA 1 cut(s) 555
MlyI GAGTC 2 cut(s) 32, 865
MmeI TCCRAC 1 cut(s) 884
MnlI CCTC 9 cut(s) 41, 67, 173, 303, 435, 899, 976, 985, 988
Mox20I TGGCCA 1 cut(s) 555
Mph1103I ATGCAT 1 cut(s) 268
MroI TCCGGA 1 cut(s) 656
MscI TGGCCA 1 cut(s) 555
MseI TTAA 4 cut(s) 69, 344, 621, 837
MslI CAYNNNNRTG 4 cut(s) 208, 728, 770, 878
Msp20I TGGCCA 1 cut(s) 555
MspI CCGG 1 cut(s) 657
MspR9I CCNGG 1 cut(s) 480
MunI CAATTG 1 cut(s) 408
MvaI CCWGG 1 cut(s) 480
MwoI GCNNNNNNNGC 5 cut(s) 27, 254, 263, 306, 329
NcoI CCATGG 1 cut(s) 471
NdeII GATC 2 cut(s) 828, 1049
NheI GCTAGC 1 cut(s) 821
NlaIII CATG 8 cut(s) 55, 223, 422, 475, 616, 835, 989, 1056
NlaIV GGNNCC 2 cut(s) 477, 601
NmuCI GTSAC 1 cut(s) 892
NsiI ATGCAT 1 cut(s) 268
NspI RCATGY 3 cut(s) 55, 422, 989
OliI CACNNNNGTG 2 cut(s) 208, 770
PaeI GCATGC 1 cut(s) 989
PagI TCATGA 2 cut(s) 612, 1052
PfeI GAWTC 3 cut(s) 370, 443, 664
PflFI GACNNNGTC 1 cut(s) 855
PkrI GCNGC 4 cut(s) 259, 357, 499, 1035
PleI GAGTC 2 cut(s) 32, 864
PpsI GAGTC 2 cut(s) 32, 864
Psp6I CCWGG 1 cut(s) 478
PspFI CCCAGC 1 cut(s) 149
PspGI CCWGG 1 cut(s) 478
PspN4I GGNNCC 2 cut(s) 477, 601
PsyI GACNNNGTC 1 cut(s) 855
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
RseI CAYNNNNRTG 4 cut(s) 208, 728, 770, 878
SaqAI TTAA 4 cut(s) 69, 344, 621, 837
SatI GCNGC 4 cut(s) 258, 356, 498, 1034
Sau3AI GATC 2 cut(s) 828, 1049
SchI GAGTC 2 cut(s) 32, 865
ScrFI CCNGG 1 cut(s) 480
SduI GDGCHC 3 cut(s) 23, 466, 723
SexAI ACCWGGT 1 cut(s) 478
SfaNI GCATC 2 cut(s) 171, 1029
SmiMI CAYNNNNRTG 4 cut(s) 208, 728, 770, 878
SmlI CTYRAG 2 cut(s) 426, 1045
SmoI CTYRAG 2 cut(s) 426, 1045
SpeI ACTAGT 1 cut(s) 283
SphI GCATGC 1 cut(s) 989
Sse9I AATT 6 cut(s) 250, 312, 408, 633, 708, 733
SsiI CCGC 3 cut(s) 257, 545, 1033
SspMI CTAG 3 cut(s) 114, 284, 822
StyD4I CCNGG 1 cut(s) 478
StyI CCWWGG 1 cut(s) 471
TaaI ACNGT 1 cut(s) 947
TaiI ACGT 1 cut(s) 436
TaqII GACCGA 1 cut(s) 598
TasI AATT 6 cut(s) 250, 312, 408, 633, 708, 733
TauI GCSGC 2 cut(s) 260, 1036
TfiI GAWTC 3 cut(s) 370, 443, 664
Tru1I TTAA 4 cut(s) 69, 344, 621, 837
Tru9I TTAA 4 cut(s) 69, 344, 621, 837
TscAI CASTG 1 cut(s) 325
TseFI GTSAC 1 cut(s) 892
TseI GCWGC 2 cut(s) 355, 497
Tsp45I GTSAC 1 cut(s) 892
TspDTI ATGAA 6 cut(s) 94, 109, 177, 529, 677, 746
TspRI CASTG 1 cut(s) 325
Tth111I GACNNNGTC 1 cut(s) 855
XceI RCATGY 3 cut(s) 55, 422, 989
XspI CTAG 3 cut(s) 114, 284, 822
Zsp2I ATGCAT 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.