Rorug07G0197300

Acts as a Mg(2 ) transporter. Can also transport other divalent cations such as Fe(2 ), Sr(2 ), Ba(2 ), Mn(2 ) and Co(2 ) but to a much less extent than Mg(2 )

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
17073978 .. 17075069
1092 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0197300.1

Sequence Viewer

Length: 945 bp
ATGGATCCTGGACCAACATCAAGATCGGTTCTTTTCAGATTTCTTCTACTTGTCTCTTTGATTCTACATGTTTCCGGCAACTTGGTCTTCCTGGCGAGTCACAAGTTCCAGGGCCGCAGTCGGCAGTGGTCACTTAGTGAGTTAAAAGCCCACGACGCTCGGCGCCACGGCCGGAACCTCCTCTCTGTTTCTTCATCAGCTGTGGATCTGGAGTTGGGCGGCAACGGCCACCCTTCCGAGACCGATCTCTACTTCGCCAAGCTCGGAATCGGATCCCCGTCGAAGGACTACTATGTGCAAGTCGACACCGGCAGCAACATTTTGTGGGTCAATTGCATTGAGTGCGCCAATTGCCCCAAGAAAAGCGACATTGGAGTCAAGCTCACATTGTATGATCCAAAGGACTCTTTCACTTCCCAATCCATCACTTGTGATCAGGACTTTTGCACTTCGCAATATGATGGTCAGTTGCCGGGTTGTAAACCGGAGTTGCTGTGTCAATATAATGTGGTCTATGGGGATGGGAGCTCGACTGCAGGGTACTTTGTGAAGGATGTGATTGAGTTTGATAAGTTGGCTGCAGCTGGGAAGGTGAAGAAGCAATTTGCACATTGTTTGGACAATGTGAATGGGGGTGGCATTTTCATAATTGGGGAAGTTGTGGAGACGAAGTTGAAGCTGAACATGACTCCATTAGTGGCCAAAAGTGCGCATTACAATGTGGTCATGGAGGCGATTGAGGTGGGTGGTGATGTTGTAGACCTGCCTTCGGATACATTTGACAGTGGAGACAAGGCAGTGGTGGTGGTTATGAGCAGAAGGGCTTGGGATTTAAGACGCAAAACCAACGAAGTGAAGAGAGAGATAGAGAGAGACCGTTTTACCCCTCAAACTAACGACGTCATTGACGTCGTGTACATATACTGGGTCGGGTTTACAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

314

Amino Acids

34.75

Weight (kDa)

5.99

Isoelectric Point (pI)

44.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 84 - 189 8.6e-20 Xylanase inhibitor N-terminal
Asp PF00026 84 - 195 4e-09 Eukaryotic aspartyl protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 374
AatII GACGTC 2 cut(s) 903, 912
Acc16I TGCGCA 1 cut(s) 711
Acc36I ACCTGC 1 cut(s) 771
AccB1I GGYRCC 1 cut(s) 162
AccI GTMKAC 2 cut(s) 303, 759
AciI CCGC 2 cut(s) 115, 219
AclWI GGATC 5 cut(s) 12, 213, 267, 280, 389
AcoI YGGCCR 3 cut(s) 169, 226, 699
AcyI GRCGYC 3 cut(s) 163, 900, 909
AdeI CACNNNGTG 1 cut(s) 137
AfaI GTAC 2 cut(s) 542, 917
AfiI CCNNNNNNNGG 2 cut(s) 283, 769
AflIII ACRYGT 1 cut(s) 67
AgsI TTSAA 1 cut(s) 676
AjnI CCWGG 3 cut(s) 7, 90, 108
AluBI AGCT 6 cut(s) 200, 262, 382, 528, 584, 679
AluI AGCT 6 cut(s) 200, 262, 382, 528, 584, 679
Alw21I GWGCWC 1 cut(s) 530
Alw26I GTCTC 5 cut(s) 58, 233, 659, 783, 867
AlwI GGATC 5 cut(s) 12, 213, 267, 280, 389
AoxI GGCC 4 cut(s) 112, 169, 226, 699
ApeKI GCWGC 3 cut(s) 312, 578, 581
AspLEI GCGC 3 cut(s) 165, 347, 712
AspS9I GGNCC 2 cut(s) 11, 112
AsuC2I CCSGG 1 cut(s) 474
AsuHPI GGTGA 2 cut(s) 604, 761
AvaII GGWCC 1 cut(s) 11
BalI TGGCCA 1 cut(s) 701
BamHI GGATCC 2 cut(s) 4, 272
BanI GGYRCC 1 cut(s) 162
BanII GRGCYC 1 cut(s) 530
BbsI GAAGAC 1 cut(s) 79
Bbv12I GWGCWC 1 cut(s) 530
BbvI GCAGC 3 cut(s) 324, 565, 593
BccI CCATC 3 cut(s) 431, 455, 515
BceAI ACGGC 2 cut(s) 184, 241
BciT130I CCWGG 3 cut(s) 9, 92, 110
BciVI GTATCC 1 cut(s) 766
BclI TGATCA 1 cut(s) 433
BcnI CCSGG 1 cut(s) 474
BcoDI GTCTC 5 cut(s) 58, 233, 659, 783, 867
BfmI CTRYAG 2 cut(s) 534, 579
BfoI RGCGCY 1 cut(s) 166
BfuAI ACCTGC 1 cut(s) 771
BfuI GTATCC 1 cut(s) 766
BisI GCNGC 5 cut(s) 115, 220, 313, 579, 582
BlsI GCNGC 5 cut(s) 116, 221, 314, 580, 583
Bme1390I CCNGG 4 cut(s) 9, 92, 110, 474
Bme18I GGWCC 1 cut(s) 11
BmgT120I GGNCC 2 cut(s) 11, 112
BmiI GGNNCC 4 cut(s) 6, 164, 176, 274
BmrFI CCNGG 4 cut(s) 9, 92, 110, 474
BmrI ACTGGG 1 cut(s) 934
BmuI ACTGGG 1 cut(s) 934
BpiI GAAGAC 1 cut(s) 79
BplI GAGNNNNNCTC 2 cut(s) 366, 398
BpmI CTGGAG 1 cut(s) 230
BpuMI CCSGG 1 cut(s) 474
BsaHI GRCGYC 3 cut(s) 163, 900, 909
BsaI GGTCTC 2 cut(s) 233, 867
BsaJI CCNNGG 2 cut(s) 109, 166
BsaWI WCCGGW 1 cut(s) 484
BsaXI ACNNNNNCTCC 4 cut(s) 479, 509, 656, 686
Bsc4I CCNNNNNNNGG 2 cut(s) 283, 769
Bse118I RCCGGY 1 cut(s) 308
Bse1I ACTGG 1 cut(s) 929
BseBI CCWGG 3 cut(s) 9, 92, 110
BseDI CCNNGG 2 cut(s) 109, 166
BseGI GGATG 2 cut(s) 526, 559
BseLI CCNNNNNNNGG 2 cut(s) 283, 769
BseNI ACTGG 1 cut(s) 929
BseRI GAGGAG 1 cut(s) 170
BseX3I CGGCCG 1 cut(s) 169
BseXI GCAGC 3 cut(s) 324, 565, 593
BseYI CCCAGC 1 cut(s) 584
Bsh1285I CGRYCG 1 cut(s) 172
BshFI GGCC 4 cut(s) 114, 171, 228, 701
BshNI GGYRCC 1 cut(s) 162
BsiEI CGRYCG 1 cut(s) 172
BsiHKAI GWGCWC 1 cut(s) 530
BsiSI CCGG 5 cut(s) 75, 172, 309, 473, 485
BslI CCNNNNNNNGG 2 cut(s) 283, 769
BsmAI GTCTC 5 cut(s) 58, 233, 659, 783, 867
BsmBI CGTCTC 1 cut(s) 659
BsnI GGCC 4 cut(s) 114, 171, 228, 701
Bso31I GGTCTC 2 cut(s) 233, 867
Bsp1286I GDGCHC 1 cut(s) 530
Bsp1407I TGTACA 1 cut(s) 915
Bsp143I GATC 7 cut(s) 4, 23, 205, 244, 272, 394, 433
BspACI CCGC 2 cut(s) 115, 219
BspANI GGCC 4 cut(s) 114, 171, 228, 701
BspLI GGNNCC 4 cut(s) 6, 164, 176, 274
BspMAI CTGCAG 2 cut(s) 538, 583
BspMI ACCTGC 1 cut(s) 771
BspPI GGATC 5 cut(s) 12, 213, 267, 280, 389
BspT107I GGYRCC 1 cut(s) 162
BspTNI GGTCTC 2 cut(s) 233, 867
BsrFI RCCGGY 1 cut(s) 308
BsrGI TGTACA 1 cut(s) 915
BsrI ACTGG 1 cut(s) 929
BssAI RCCGGY 1 cut(s) 308
BssECI CCNNGG 2 cut(s) 109, 166
BssMI GATC 7 cut(s) 4, 23, 205, 244, 272, 394, 433
BssNI GRCGYC 3 cut(s) 163, 900, 909
Bst2UI CCWGG 3 cut(s) 9, 92, 110
Bst4CI ACNGT 2 cut(s) 785, 878
Bst6I CTCTTC 1 cut(s) 851
BstACI GRCGYC 3 cut(s) 163, 900, 909
BstAPI GCANNNNNTGC 1 cut(s) 342
BstAUI TGTACA 1 cut(s) 915
BstDEI CTNAG 1 cut(s) 134
BstDSI CCRYGG 1 cut(s) 166
BstF5I GGATG 2 cut(s) 526, 559
BstH2I RGCGCY 1 cut(s) 166
BstHHI GCGC 3 cut(s) 165, 347, 712
BstKTI GATC 7 cut(s) 7, 26, 208, 247, 275, 397, 436
BstMAI GTCTC 5 cut(s) 58, 233, 659, 783, 867
BstMBI GATC 7 cut(s) 4, 23, 205, 244, 272, 394, 433
BstMCI CGRYCG 1 cut(s) 172
BstMWI GCNNNNNNNGC 5 cut(s) 155, 225, 342, 351, 707
BstNI CCWGG 3 cut(s) 9, 92, 110
BstNSI RCATGY 1 cut(s) 71
BstSCI CCNGG 4 cut(s) 7, 90, 108, 472
BstSFI CTRYAG 2 cut(s) 534, 579
BstV1I GCAGC 3 cut(s) 324, 565, 593
BstV2I GAAGAC 1 cut(s) 79
BstX2I RGATCY 3 cut(s) 4, 205, 272
BstYI RGATCY 3 cut(s) 4, 205, 272
BstZI CGGCCG 1 cut(s) 169
BsuI GTATCC 1 cut(s) 766
BsuRI GGCC 4 cut(s) 114, 171, 228, 701
BtgI CCRYGG 1 cut(s) 166
BtsCI GGATG 2 cut(s) 526, 559
BtsI GCAGTG 2 cut(s) 131, 804
BtsIMutI CAGTG 3 cut(s) 131, 790, 804
BveI ACCTGC 1 cut(s) 771
CfoI GCGC 3 cut(s) 165, 347, 712
Cfr10I RCCGGY 1 cut(s) 308
Cfr13I GGNCC 2 cut(s) 11, 112
CseI GACGC 2 cut(s) 164, 846
Csp6I GTAC 2 cut(s) 541, 916
CviAII CATG 3 cut(s) 68, 685, 727
CviQI GTAC 2 cut(s) 541, 916
DdeI CTNAG 1 cut(s) 134
DinI GGCGCC 1 cut(s) 164
DpnI GATC 7 cut(s) 6, 25, 207, 246, 274, 396, 435
DpnII GATC 7 cut(s) 4, 23, 205, 244, 272, 394, 433
DraIII CACNNNGTG 1 cut(s) 137
DrdI GACNNNNNNGTC 1 cut(s) 374
DseDI GACNNNNNNGTC 1 cut(s) 374
EaeI YGGCCR 3 cut(s) 169, 226, 699
EagI CGGCCG 1 cut(s) 169
Eam1104I CTCTTC 1 cut(s) 851
EarI CTCTTC 1 cut(s) 851
Ecl136II GAGCTC 1 cut(s) 528
EclXI CGGCCG 1 cut(s) 169
Eco24I GRGCYC 1 cut(s) 530
Eco31I GGTCTC 2 cut(s) 233, 867
Eco47I GGWCC 1 cut(s) 11
Eco52I CGGCCG 1 cut(s) 169
Eco53kI GAGCTC 1 cut(s) 528
EcoICRI GAGCTC 1 cut(s) 528
EcoRII CCWGG 3 cut(s) 7, 90, 108
EcoT38I GRGCYC 1 cut(s) 530
EgeI GGCGCC 1 cut(s) 164
EheI GGCGCC 1 cut(s) 164
Esp3I CGTCTC 1 cut(s) 659
FaeI CATG 3 cut(s) 71, 688, 730
FatI CATG 3 cut(s) 67, 684, 726
FbaI TGATCA 1 cut(s) 433
FblI GTMKAC 2 cut(s) 303, 759
Fnu4HI GCNGC 5 cut(s) 115, 220, 313, 579, 582
FokI GGATG 2 cut(s) 533, 566
FriOI GRGCYC 1 cut(s) 530
Fsp4HI GCNGC 5 cut(s) 115, 220, 313, 579, 582
FspAI RTGCGCAY 1 cut(s) 711
FspI TGCGCA 1 cut(s) 711
GlaI GCGC 3 cut(s) 164, 346, 711
GluI GCNGC 5 cut(s) 115, 220, 313, 579, 582
GsaI CCCAGC 1 cut(s) 588
GsuI CTGGAG 1 cut(s) 230
HaeII RGCGCY 1 cut(s) 166
HaeIII GGCC 4 cut(s) 114, 171, 228, 701
HapII CCGG 5 cut(s) 75, 172, 309, 473, 485
HgaI GACGC 2 cut(s) 164, 846
HhaI GCGC 3 cut(s) 165, 347, 712
Hin1I GRCGYC 3 cut(s) 163, 900, 909
Hin1II CATG 3 cut(s) 71, 688, 730
Hin6I GCGC 3 cut(s) 163, 345, 710
HinP1I GCGC 3 cut(s) 163, 345, 710
HincII GTYRAC 1 cut(s) 304
HindII GTYRAC 1 cut(s) 304
HinfI GANTC 6 cut(s) 61, 97, 267, 375, 404, 688
HpaII CCGG 5 cut(s) 75, 172, 309, 473, 485
HphI GGTGA 2 cut(s) 604, 761
Hpy166II GTNNAC 5 cut(s) 304, 482, 760, 916, 936
Hpy188I TCNGA 5 cut(s) 38, 238, 266, 272, 772
Hpy188III TCNNGA 3 cut(s) 21, 209, 437
Hpy8I GTNNAC 5 cut(s) 304, 482, 760, 916, 936
Hpy99I CGWCG 4 cut(s) 158, 283, 902, 914
HpyAV CCTTC 6 cut(s) 243, 277, 544, 583, 777, 813
HpyCH4III ACNGT 2 cut(s) 785, 878
HpyCH4IV ACGT 2 cut(s) 900, 909
HpyCH4V TGCA 6 cut(s) 298, 336, 447, 536, 581, 608
HpyF10VI GCNNNNNNNGC 5 cut(s) 155, 225, 342, 351, 707
HpyF3I CTNAG 1 cut(s) 134
HpySE526I ACGT 2 cut(s) 900, 909
Hsp92I GRCGYC 3 cut(s) 163, 900, 909
Hsp92II CATG 3 cut(s) 71, 688, 730
HspAI GCGC 3 cut(s) 163, 345, 710
KasI GGCGCC 1 cut(s) 162
Ksp22I TGATCA 1 cut(s) 433
Kzo9I GATC 7 cut(s) 4, 23, 205, 244, 272, 394, 433
LmnI GCTCC 1 cut(s) 525
Lsp1109I GCAGC 3 cut(s) 324, 565, 593
MaeII ACGT 2 cut(s) 900, 909
MaeIII GTNAC 2 cut(s) 98, 129
MalI GATC 7 cut(s) 6, 25, 207, 246, 274, 396, 435
MboI GATC 7 cut(s) 4, 23, 205, 244, 272, 394, 433
MboII GAAGA 5 cut(s) 35, 79, 183, 607, 868
MfeI CAATTG 2 cut(s) 331, 349
MflI RGATCY 3 cut(s) 4, 205, 272
MhlI GDGCHC 1 cut(s) 530
MlsI TGGCCA 1 cut(s) 701
MluCI AATT 5 cut(s) 331, 349, 602, 648, 939
MluNI TGGCCA 1 cut(s) 701
Mly113I GGCGCC 1 cut(s) 163
MlyI GAGTC 4 cut(s) 106, 384, 398, 682
MnlI CCTC 5 cut(s) 188, 191, 724, 733, 897
Mox20I TGGCCA 1 cut(s) 701
MscI TGGCCA 1 cut(s) 701
MseI TTAA 2 cut(s) 143, 833
MslI CAYNNNNRTG 1 cut(s) 717
Msp20I TGGCCA 1 cut(s) 701
MspA1I CMGCKG 2 cut(s) 200, 584
MspI CCGG 5 cut(s) 75, 172, 309, 473, 485
MspR9I CCNGG 4 cut(s) 9, 92, 110, 474
MunI CAATTG 2 cut(s) 331, 349
MvaI CCWGG 3 cut(s) 9, 92, 110
MwoI GCNNNNNNNGC 5 cut(s) 155, 225, 342, 351, 707
NarI GGCGCC 1 cut(s) 163
NciI CCSGG 1 cut(s) 474
NdeII GATC 7 cut(s) 4, 23, 205, 244, 272, 394, 433
NlaIII CATG 3 cut(s) 71, 688, 730
NlaIV GGNNCC 4 cut(s) 6, 164, 176, 274
NmeAIII GCCGAG 1 cut(s) 139
NmuCI GTSAC 2 cut(s) 98, 129
NsbI TGCGCA 1 cut(s) 711
NspI RCATGY 1 cut(s) 71
PciI ACATGT 1 cut(s) 67
PcsI WCGNNNNNNNCGW 1 cut(s) 906
PfeI GAWTC 2 cut(s) 61, 267
PfoI TCCNGGA 1 cut(s) 7
PkrI GCNGC 5 cut(s) 116, 221, 314, 580, 583
PleI GAGTC 4 cut(s) 105, 383, 398, 682
PluTI GGCGCC 1 cut(s) 166
PpsI GAGTC 4 cut(s) 105, 383, 398, 682
PscI ACATGT 1 cut(s) 67
Psp124BI GAGCTC 1 cut(s) 530
Psp6I CCWGG 3 cut(s) 7, 90, 108
PspFI CCCAGC 1 cut(s) 584
PspGI CCWGG 3 cut(s) 7, 90, 108
PspN4I GGNNCC 4 cut(s) 6, 164, 176, 274
PspPI GGNCC 2 cut(s) 11, 112
PstI CTGCAG 2 cut(s) 538, 583
PsuI RGATCY 3 cut(s) 4, 205, 272
PvuII CAGCTG 2 cut(s) 200, 584
RsaI GTAC 2 cut(s) 542, 917
RsaNI GTAC 2 cut(s) 541, 916
RseI CAYNNNNRTG 1 cut(s) 717
SacI GAGCTC 1 cut(s) 530
SalI GTCGAC 1 cut(s) 302
SaqAI TTAA 2 cut(s) 143, 833
SatI GCNGC 5 cut(s) 115, 220, 313, 579, 582
Sau3AI GATC 7 cut(s) 4, 23, 205, 244, 272, 394, 433
Sau96I GGNCC 2 cut(s) 11, 112
SchI GAGTC 4 cut(s) 106, 384, 398, 682
ScrFI CCNGG 4 cut(s) 9, 92, 110, 474
SduI GDGCHC 1 cut(s) 530
SfcI CTRYAG 2 cut(s) 534, 579
SfoI GGCGCC 1 cut(s) 164
SinI GGWCC 1 cut(s) 11
SmiMI CAYNNNNRTG 1 cut(s) 717
Sse9I AATT 5 cut(s) 331, 349, 602, 648, 939
SsiI CCGC 2 cut(s) 115, 219
SspDI GGCGCC 1 cut(s) 162
SstI GAGCTC 1 cut(s) 530
StyD4I CCNGG 4 cut(s) 7, 90, 108, 472
TaaI ACNGT 2 cut(s) 785, 878
TaiI ACGT 2 cut(s) 903, 912
TaqI TCGA 3 cut(s) 281, 303, 530
TaqII GACCGA 1 cut(s) 257
TasI AATT 5 cut(s) 331, 349, 602, 648, 939
TatI WGTACW 1 cut(s) 915
TauI GCSGC 2 cut(s) 117, 222
TfiI GAWTC 2 cut(s) 61, 267
Tru1I TTAA 2 cut(s) 143, 833
Tru9I TTAA 2 cut(s) 143, 833
TscAI CASTG 3 cut(s) 131, 790, 804
TseFI GTSAC 2 cut(s) 98, 129
TseI GCWGC 3 cut(s) 312, 578, 581
Tsp45I GTSAC 2 cut(s) 98, 129
TspDTI ATGAA 2 cut(s) 183, 634
TspRI CASTG 3 cut(s) 131, 790, 804
VpaK11BI GGWCC 1 cut(s) 11
XceI RCATGY 1 cut(s) 71
XmiI GTMKAC 2 cut(s) 303, 759
ZraI GACGTC 2 cut(s) 901, 910
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.