Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008936

Physical Location & Seq

Genomic Coordinates Forward (+)

27061461 .. 27064530

Gene Structure 3070 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G71900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGCGGAATCTAGTGGAAGTTGGAGAGATTCTTATAAAGGAATGTCGTCTGATAACATCAAGGGTTTGGTTTTAGCGTTGTCTTCTAGTTTGTTCATTGGTGCTAGTTTCATTGTTAAGAAGAAAGGGCTTAAGAAAGCTGCGAGTACTGGTACTAGGGCAGGTGTTGGTGGGTATTCTTATCTCTACGAGCCTCTTTGGTGGATTGGCATGACGACAATGTTACTTGGTGAAATTGCCAATTTCGCTGCTTATGCATTTGCGCCTGCTATACTTGTCACTCCTCTAGGTGCTGTCAGTATCATTATCAGTGCTGTCTTAGCTCATATTATATTACGGGAAAAACTACATATCTTTGGAATTCTTGGCTGTGCCTTATGTGTTGTGGGTTCCACAACAATTGTCTTACATGCCCCTCAAGAACGTGAAATTGACTCTGTGATTGAAGTTTGGAATCTTGCAACTGAACCAGCATTCATGTTCTATGCGAGTCTGGTAATTGGGGCTGCTGTATTTCTCATTATCCGTTTTGTGCCCCAATATGGGCAAACAAATGTAATGGTTTACATTGGTATTTGTTCGCTCGTGGGATCATTATCGGTAATGAGTGTAAAAGCACTTGGAATAGCATTAAAGCTGACCTTTTCAGGAACAAATCAGTTATTTTATCCTCAAACATGGATATTCACCTTGGTCGTACTTACTTGTGTGGTAACCCAACTGAACTACTTAAACAAGGCTCTTGATACATTCAATACAGCTATAGTATCTCCTATATACTACGTGATGTTCACATCTCTAACTATTTTGGCTAGTGTCATCATGTTTAAGGACTGGGATCGGCAAAACGGTACTCAAATTGTTACAGAAATATGTGGATTTGTTACAATACTTTCAGGCACTTTTCTTCTCCACAGAACAAAGGACATGGTCGAGGGTTCGTCGGTAATATTACCGTTGCGGATAAGCAAGCATATAAATGAAGAAGAAGGCATTCCACTCAGACGCCAAGAATCTCTCCGGTCACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0012505 GO:0015693 GO:0016020 GO:0030001 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0070838 GO:0071944 GO:0072511 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mg_trans_NIPA

Protein Analysis

343

Amino Acids

37.47

Weight (kDa)

8.72

Isoelectric Point (pI)

41.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mg_trans_NIPA	PF05653	18 - 310	2e-132	Magnesium transporter NIPA

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008936)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34470 AT1G71900 AT1G71900 AT4G09640
fragaria_vesca	FvH4_5g28690 FvH4_5g28690 FvH4_5g28690
malus_domestica	MD08G1240300.v1.1 MD15G1432900.v1.1
prunus_persica	Prupe.1G576800_v2.0.a1
pyrus_communis	pycom08g20840 pycom15g38250
rosa_chinensis	RchiOBHm_Chr7g0220851
rosa_laevigata	RLG00000002198
rosa_multiflora	Rmu_ssc0000286.1_g000017
rosa_roxburghii	Rroxscaffold_3G00238990
rosa_rugosa	Rorug07G0197200 Rorug07G0197300
rosa_samantha	Rh7AG337900 Rh7BG328700 Rh7CG355900 Rh7DG336900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	36
AarI	CACCTGC	1 cut(s)	152
Acc36I	ACCTGC	1 cut(s)	152
AciI	CCGC	2 cut(s)	5, 961
AclWI	GGATC	2 cut(s)	598, 846
AcsI	RAATTY	1 cut(s)	360
AcyI	GRCGYC	1 cut(s)	1006
AfaI	GTAC	4 cut(s)	148, 154, 699, 853
AfiI	CCNNNNNNNGG	2 cut(s)	542, 543
AflII	CTTAAG	1 cut(s)	131
AgsI	TTSAA	2 cut(s)	446, 754
AluBI	AGCT	4 cut(s)	140, 323, 637, 761
AluI	AGCT	4 cut(s)	140, 323, 637, 761
AlwI	GGATC	2 cut(s)	598, 846
ApeKI	GCWGC	3 cut(s)	140, 248, 506
ApoI	RAATTY	1 cut(s)	360
Asp700I	GAANNNNTTC	1 cut(s)	993
AspLEI	GCGC	1 cut(s)	265
AsuHPI	GGTGA	3 cut(s)	242, 679, 1017
BaeGI	GKGCMC	1 cut(s)	537
BauI	CACGAG	1 cut(s)	584
BbsI	GAAGAC	1 cut(s)	75
BbvI	GCAGC	3 cut(s)	127, 235, 493
BfaI	CTAG	6 cut(s)	12, 87, 105, 156, 287, 813
BfmI	CTRYAG	1 cut(s)	762
BfrI	CTTAAG	1 cut(s)	131
BfuAI	ACCTGC	1 cut(s)	152
BisI	GCNGC	3 cut(s)	141, 249, 507
BlsI	GCNGC	3 cut(s)	142, 250, 508
BmcAI	AGTACT	1 cut(s)	148
BmiI	GGNNCC	1 cut(s)	391
BmrI	ACTGGG	1 cut(s)	844
BmuI	ACTGGG	1 cut(s)	844
BpiI	GAAGAC	1 cut(s)	75
BpuEI	CTTGAG	1 cut(s)	402
BsaAI	YACGTR	1 cut(s)	784
BsaBI	GATNNNNATC	1 cut(s)	595
BsaHI	GRCGYC	1 cut(s)	1006
BsaJI	CCNNGG	1 cut(s)	690
BsaWI	WCCGGW	1 cut(s)	1020
Bsc4I	CCNNNNNNNGG	2 cut(s)	542, 543
Bse1I	ACTGG	2 cut(s)	154, 839
Bse8I	GATNNNNATC	1 cut(s)	595
BseDI	CCNNGG	1 cut(s)	690
BseJI	GATNNNNATC	1 cut(s)	595
BseLI	CCNNNNNNNGG	2 cut(s)	542, 543
BseMII	CTCAG	1 cut(s)	1015
BseNI	ACTGG	2 cut(s)	154, 839
BseRI	GAGGAG	1 cut(s)	273
BseSI	GKGCMC	1 cut(s)	537
BseXI	GCAGC	3 cut(s)	127, 235, 493
BsiSI	CCGG	1 cut(s)	1021
BslI	CCNNNNNNNGG	2 cut(s)	542, 543
BsmI	GAATGC	2 cut(s)	473, 993
Bsp1286I	GDGCHC	1 cut(s)	537
Bsp143I	GATC	2 cut(s)	590, 838
BspACI	CCGC	2 cut(s)	5, 961
BspCNI	CTCAG	1 cut(s)	1014
BspLI	GGNNCC	1 cut(s)	391
BspMI	ACCTGC	1 cut(s)	152
BspPI	GGATC	2 cut(s)	598, 846
BspTI	CTTAAG	1 cut(s)	131
BsrI	ACTGG	2 cut(s)	154, 839
BssECI	CCNNGG	1 cut(s)	690
BssMI	GATC	2 cut(s)	590, 838
BssNI	GRCGYC	1 cut(s)	1006
BssSI	CACGAG	1 cut(s)	584
BssT1I	CCWWGG	1 cut(s)	690
Bst2BI	CACGAG	1 cut(s)	584
Bst4CI	ACNGT	2 cut(s)	851, 957
BstACI	GRCGYC	1 cut(s)	1006
BstAFI	CTTAAG	1 cut(s)	131
BstBAI	YACGTR	1 cut(s)	784
BstC8I	GCNNGC	2 cut(s)	267, 971
BstDEI	CTNAG	2 cut(s)	319, 1001
BstEII	GGTNACC	2 cut(s)	712, 1023
BstHHI	GCGC	1 cut(s)	265
BstKTI	GATC	2 cut(s)	593, 841
BstMBI	GATC	2 cut(s)	590, 838
BstMWI	GCNNNNNNNGC	3 cut(s)	245, 254, 320
BstNSI	RCATGY	1 cut(s)	413
BstPI	GGTNACC	2 cut(s)	712, 1023
BstSFI	CTRYAG	1 cut(s)	762
BstSLI	GKGCMC	1 cut(s)	537
BstV1I	GCAGC	3 cut(s)	127, 235, 493
BstV2I	GAAGAC	1 cut(s)	75
BtsIMutI	CAGTG	1 cut(s)	316
BveI	ACCTGC	1 cut(s)	152
Cac8I	GCNNGC	2 cut(s)	267, 971
CfoI	GCGC	1 cut(s)	265
CseI	GACGC	1 cut(s)	1014
Csp6I	GTAC	4 cut(s)	147, 153, 698, 852
CspCI	CAANNNNNGTGG	2 cut(s)	382, 417
CviAII	CATG	6 cut(s)	211, 410, 478, 678, 823, 928
CviQI	GTAC	4 cut(s)	147, 153, 698, 852
DdeI	CTNAG	2 cut(s)	319, 1001
DpnI	GATC	2 cut(s)	592, 840
DpnII	GATC	2 cut(s)	590, 838
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	690
Eco91I	GGTNACC	2 cut(s)	712, 1023
EcoO65I	GGTNACC	2 cut(s)	712, 1023
EcoRI	GAATTC	1 cut(s)	360
EcoT14I	CCWWGG	1 cut(s)	690
EcoT22I	ATGCAT	1 cut(s)	259
ErhI	CCWWGG	1 cut(s)	690
FaeI	CATG	6 cut(s)	214, 413, 481, 681, 826, 931
FalI	AAGNNNNNCTT	2 cut(s)	626, 658
FatI	CATG	6 cut(s)	210, 409, 477, 677, 822, 927
Fnu4HI	GCNGC	3 cut(s)	141, 249, 507
Fsp4HI	GCNGC	3 cut(s)	141, 249, 507
FspBI	CTAG	6 cut(s)	12, 87, 105, 156, 287, 813
GlaI	GCGC	1 cut(s)	264
GluI	GCNGC	3 cut(s)	141, 249, 507
HapII	CCGG	1 cut(s)	1021
HgaI	GACGC	1 cut(s)	1014
HhaI	GCGC	1 cut(s)	265
Hin1I	GRCGYC	1 cut(s)	1006
Hin1II	CATG	6 cut(s)	214, 413, 481, 681, 826, 931
Hin6I	GCGC	1 cut(s)	263
HinP1I	GCGC	1 cut(s)	263
HinfI	GANTC	6 cut(s)	8, 29, 434, 454, 490, 1013
HpaII	CCGG	1 cut(s)	1021
HphI	GGTGA	3 cut(s)	242, 679, 1017
Hpy166II	GTNNAC	2 cut(s)	565, 792
Hpy188I	TCNGA	2 cut(s)	52, 1004
Hpy188III	TCNNGA	3 cut(s)	419, 648, 743
Hpy8I	GTNNAC	2 cut(s)	565, 792
Hpy99I	CGWCG	1 cut(s)	946
HpyAV	CCTTC	1 cut(s)	983
HpyCH4III	ACNGT	2 cut(s)	851, 957
HpyCH4IV	ACGT	2 cut(s)	424, 783
HpyCH4V	TGCA	2 cut(s)	257, 461
HpyF10VI	GCNNNNNNNGC	3 cut(s)	245, 254, 320
HpyF3I	CTNAG	2 cut(s)	319, 1001
HpySE526I	ACGT	2 cut(s)	424, 783
Hsp92I	GRCGYC	1 cut(s)	1006
Hsp92II	CATG	6 cut(s)	214, 413, 481, 681, 826, 931
HspAI	GCGC	1 cut(s)	263
Kzo9I	GATC	2 cut(s)	590, 838
LpnPI	CCDG	8 cut(s)	135, 147, 279, 479, 483, 633, 820, 882
Lsp1109I	GCAGC	3 cut(s)	127, 235, 493
MaeI	CTAG	6 cut(s)	12, 87, 105, 156, 287, 813
MaeII	ACGT	2 cut(s)	424, 783
MaeIII	GTNAC	6 cut(s)	222, 277, 712, 862, 883, 1023
MalI	GATC	2 cut(s)	592, 840
MboI	GATC	2 cut(s)	590, 838
MboII	GAAGA	5 cut(s)	75, 133, 899, 995, 998
MfeI	CAATTG	1 cut(s)	399
MhlI	GDGCHC	1 cut(s)	537
MluCI	AATT	7 cut(s)	234, 241, 360, 399, 429, 498, 858
MlyI	GAGTC	2 cut(s)	428, 499
MnlI	CCTC	5 cut(s)	204, 294, 426, 681, 928
Mph1103I	ATGCAT	1 cut(s)	259
MroXI	GAANNNNTTC	1 cut(s)	993
MseI	TTAA	6 cut(s)	117, 132, 632, 731, 828, 1030
MslI	CAYNNNNRTG	1 cut(s)	978
MspCI	CTTAAG	1 cut(s)	131
MspI	CCGG	1 cut(s)	1021
MunI	CAATTG	1 cut(s)	399
Mva1269I	GAATGC	2 cut(s)	473, 993
MwoI	GCNNNNNNNGC	3 cut(s)	245, 254, 320
NdeII	GATC	2 cut(s)	590, 838
NlaIII	CATG	6 cut(s)	214, 413, 481, 681, 826, 931
NlaIV	GGNNCC	1 cut(s)	391
NmuCI	GTSAC	2 cut(s)	277, 1023
NsiI	ATGCAT	1 cut(s)	259
NspI	RCATGY	1 cut(s)	413
PaqCI	CACCTGC	1 cut(s)	152
PctI	GAATGC	2 cut(s)	473, 993
PdmI	GAANNNNTTC	1 cut(s)	993
PfeI	GAWTC	4 cut(s)	8, 29, 454, 1013
PflFI	GACNNNGTC	1 cut(s)	929
PkrI	GCNGC	3 cut(s)	142, 250, 508
PleI	GAGTC	2 cut(s)	428, 498
PpsI	GAGTC	2 cut(s)	428, 498
Ppu21I	YACGTR	1 cut(s)	784
PsiI	TTATAA	1 cut(s)	36
PspEI	GGTNACC	2 cut(s)	712, 1023
PspN4I	GGNNCC	1 cut(s)	391
PsyI	GACNNNGTC	1 cut(s)	929
RsaI	GTAC	4 cut(s)	148, 154, 699, 853
RsaNI	GTAC	4 cut(s)	147, 153, 698, 852
RseI	CAYNNNNRTG	1 cut(s)	978
SaqAI	TTAA	6 cut(s)	117, 132, 632, 731, 828, 1030
SatI	GCNGC	3 cut(s)	141, 249, 507
Sau3AI	GATC	2 cut(s)	590, 838
ScaI	AGTACT	1 cut(s)	148
SchI	GAGTC	2 cut(s)	428, 499
SduI	GDGCHC	1 cut(s)	537
SfcI	CTRYAG	1 cut(s)	762
SmiMI	CAYNNNNRTG	1 cut(s)	978
SmlI	CTYRAG	2 cut(s)	131, 417
SmoI	CTYRAG	2 cut(s)	131, 417
Sse9I	AATT	7 cut(s)	234, 241, 360, 399, 429, 498, 858
SsiI	CCGC	2 cut(s)	5, 961
SspI	AATATT	1 cut(s)	951
SspMI	CTAG	6 cut(s)	12, 87, 105, 156, 287, 813
StyI	CCWWGG	1 cut(s)	690
TaaI	ACNGT	2 cut(s)	851, 957
TaiI	ACGT	2 cut(s)	427, 786
TaqI	TCGA	1 cut(s)	933
TasI	AATT	7 cut(s)	234, 241, 360, 399, 429, 498, 858
TatI	WGTACW	1 cut(s)	146
TfiI	GAWTC	4 cut(s)	8, 29, 454, 1013
Tru1I	TTAA	6 cut(s)	117, 132, 632, 731, 828, 1030
Tru9I	TTAA	6 cut(s)	117, 132, 632, 731, 828, 1030
TscAI	CASTG	1 cut(s)	316
TseFI	GTSAC	2 cut(s)	277, 1023
TseI	GCWGC	3 cut(s)	140, 248, 506
Tsp45I	GTSAC	2 cut(s)	277, 1023
TspDTI	ATGAA	4 cut(s)	85, 100, 466, 996
TspGWI	ACGGA	1 cut(s)	515
TspRI	CASTG	1 cut(s)	316
Tth111I	GACNNNGTC	1 cut(s)	929
Vha464I	CTTAAG	1 cut(s)	131
XapI	RAATTY	1 cut(s)	360
XceI	RCATGY	1 cut(s)	413
XmnI	GAANNNNTTC	1 cut(s)	993
XspI	CTAG	6 cut(s)	12, 87, 105, 156, 287, 813
ZrmI	AGTACT	1 cut(s)	148
Zsp2I	ATGCAT	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.