pycom08g20840

Acts as a Mg(2 ) transporter. Can also transport other divalent cations such as Fe(2 ), Sr(2 ), Ba(2 ), Mn(2 ) and Co(2 ) but to a much less extent than Mg(2 )

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Reverse (-)
20479280 .. 20483683
4404 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g20840.5

Sequence Viewer

Length: 1056 bp
ATGGCGACCGAGGGTCAGAGCCCCCCGATGAGCTGGAGAGACTCGTACAAGGGGATGTCCTCTGACAACATCAAGGGTTTGATTCTTGCTTTGTCTTCAAGTTTGTTTATCGGTGCTAGTTTCATTGTGAAGAAGAAGGGATTGAAAAAGGCCGGGGCTTCTGGCATCAGAGCAGGAGTTGGAGGATATTCGTACCTATACGAGCCACTTTGGTGGGTGGGCATGATAACGATGATTGTTGGGGAAATTGCTAATTTTGCGGCTTATGCATTTGCACCAGCTATACTAGTAACTCCTCTTGGTGCTCTCAGCATAATTATCAGTGCTGTGCTTGCACATATTATTTTACGTGAGAGGCTTCATATCTTCGGTGTTCTTGGTTGCGCTTTGTGTGTTGTGGGTTCTACAACAATTGTTTTACACGCTCCTCAAGAACGTATGATTGAATCTGTTACAGAAGTTTGGGATCTTGCCATGGAACCAGGTTTTCTCTTGTATGCAGCTTTGGTCATAACTGCTGTGTTTATACTTATATTCCACTTTATCCCGCAATATGGCCATACACACATAATGGTCTACATTGGAGTTTGTTCCCTTGTTGGTTCCTTATCGGTCATGAGTGTTAAAGCACTTGGAATTGCTTTGAAGTTGACATTATCAGGCATGAATCAGCTAGTTTACCCCCAAACTTGGGTCTTCACTTTAGTTGTCATTTCTTGTGTGCTTACCCAAATGAATTATTTGAATAAGGCACTTGATACTTTCAACACAGCTGTGGTATCTCCTATATACTATGTTATGTTCACATCACTAACTATTCTGGCTAGCGTTATCATGTTCAAGGATTGGGACAGACAGAGTCCAACTCAGGTTATCACCGAAATGTGTGGGTTTGTGACCATCCTTGGAGGAACTTTTCTTCTTCACAGAACGAAGGATATGGTTGACGGTTTGCCAACATCAATGTCCTCCGTGCGACTATCTAAGCATGCAGATGAAGATGGAATCGATGGTTCTGAAGGCATCCCTCTTAGACGGCAGAATAATTCCTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

352

Amino Acids

38.19

Weight (kDa)

7.67

Isoelectric Point (pI)

39.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 576
AciI CCGC 2 cut(s) 260, 548
AclWI GGATC 1 cut(s) 474
AcoI YGGCCR 1 cut(s) 556
AcuI CTGAAG 1 cut(s) 1038
AfaI GTAC 2 cut(s) 47, 194
AfiI CCNNNNNNNGG 3 cut(s) 554, 690, 691
AgsI TTSAA 7 cut(s) 99, 145, 446, 646, 745, 766, 841
AhdI GACNNNNNGTC 1 cut(s) 12
AhlI ACTAGT 1 cut(s) 286
AjnI CCWGG 1 cut(s) 481
AleI CACNNNNGTG 2 cut(s) 211, 773
AluBI AGCT 5 cut(s) 33, 281, 503, 673, 773
AluI AGCT 5 cut(s) 33, 281, 503, 673, 773
Alw21I GWGCWC 1 cut(s) 307
Alw26I GTCTC 1 cut(s) 33
AlwI GGATC 1 cut(s) 474
AoxI GGCC 2 cut(s) 150, 556
ApeKI GCWGC 1 cut(s) 500
AspLEI GCGC 1 cut(s) 386
AsuC2I CCSGG 1 cut(s) 154
AsuHPI GGTGA 1 cut(s) 868
AsuNHI GCTAGC 1 cut(s) 824
BalI TGGCCA 1 cut(s) 558
BanII GRGCYC 1 cut(s) 23
BbsI GAAGAC 2 cut(s) 87, 688
Bbv12I GWGCWC 1 cut(s) 307
BbvI GCAGC 1 cut(s) 512
BccI CCATC 3 cut(s) 908, 995, 1004
BceAI ACGGC 1 cut(s) 1052
BciT130I CCWGG 1 cut(s) 483
BcnI CCSGG 1 cut(s) 154
BcoDI GTCTC 1 cut(s) 33
BcuI ACTAGT 1 cut(s) 286
BfaI CTAG 4 cut(s) 117, 287, 674, 825
BisI GCNGC 2 cut(s) 261, 501
BlsI GCNGC 2 cut(s) 262, 502
Bme1390I CCNGG 2 cut(s) 154, 483
BmeRI GACNNNNNGTC 1 cut(s) 12
BmiI GGNNCC 2 cut(s) 480, 604
BmrFI CCNGG 2 cut(s) 154, 483
BmsI GCATC 2 cut(s) 174, 1032
BmtI GCTAGC 1 cut(s) 828
BpiI GAAGAC 2 cut(s) 87, 688
BplI GAGNNNNNCTC 2 cut(s) 850, 882
BpmI CTGGAG 1 cut(s) 55
BpuEI CTTGAG 1 cut(s) 414
BpuMI CCSGG 1 cut(s) 154
Bsa29I ATCGAT 1 cut(s) 1008
BsaAI YACGTR 1 cut(s) 350
BsaJI CCNNGG 4 cut(s) 9, 153, 474, 904
Bsc4I CCNNNNNNNGG 3 cut(s) 554, 690, 691
BseBI CCWGG 1 cut(s) 483
BseCI ATCGAT 1 cut(s) 1008
BseDI CCNNGG 4 cut(s) 9, 153, 474, 904
BseGI GGATG 3 cut(s) 60, 900, 1023
BseLI CCNNNNNNNGG 3 cut(s) 554, 690, 691
BseMII CTCAG 2 cut(s) 322, 881
BseRI GAGGAG 2 cut(s) 285, 417
BseXI GCAGC 1 cut(s) 512
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 2 cut(s) 152, 558
BshVI ATCGAT 1 cut(s) 1008
BsiEI CGRYCG 1 cut(s) 9
BsiHKAI GWGCWC 1 cut(s) 307
BsiSI CCGG 1 cut(s) 153
BslFI GGGAC 1 cut(s) 863
BslI CCNNNNNNNGG 3 cut(s) 554, 690, 691
BsmAI GTCTC 1 cut(s) 33
BsmFI GGGAC 1 cut(s) 863
BsnI GGCC 2 cut(s) 152, 558
Bsp1286I GDGCHC 2 cut(s) 23, 307
Bsp143I GATC 1 cut(s) 466
Bsp19I CCATGG 1 cut(s) 474
BspACI CCGC 2 cut(s) 260, 548
BspANI GGCC 2 cut(s) 152, 558
BspCNI CTCAG 2 cut(s) 321, 880
BspDI ATCGAT 1 cut(s) 1008
BspHI TCATGA 1 cut(s) 615
BspLI GGNNCC 2 cut(s) 480, 604
BspOI GCTAGC 1 cut(s) 828
BspPI GGATC 1 cut(s) 474
BssECI CCNNGG 4 cut(s) 9, 153, 474, 904
BssMI GATC 1 cut(s) 466
BssT1I CCWWGG 2 cut(s) 474, 904
Bst2UI CCWGG 1 cut(s) 483
Bst4CI ACNGT 1 cut(s) 950
BstBAI YACGTR 1 cut(s) 350
BstC8I GCNNGC 3 cut(s) 333, 826, 990
BstDEI CTNAG 4 cut(s) 308, 867, 984, 1031
BstDSI CCRYGG 1 cut(s) 474
BstF5I GGATG 3 cut(s) 60, 900, 1023
BstHHI GCGC 1 cut(s) 386
BstKTI GATC 1 cut(s) 469
BstMAI GTCTC 1 cut(s) 33
BstMBI GATC 1 cut(s) 466
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 3 cut(s) 257, 266, 332
BstNI CCWGG 1 cut(s) 483
BstNSI RCATGY 1 cut(s) 992
BstSCI CCNGG 2 cut(s) 152, 481
BstV1I GCAGC 1 cut(s) 512
BstV2I GAAGAC 2 cut(s) 87, 688
BstX2I RGATCY 1 cut(s) 466
BstXI CCANNNNNNTGG 1 cut(s) 213
BstYI RGATCY 1 cut(s) 466
Bsu15I ATCGAT 1 cut(s) 1008
BsuRI GGCC 2 cut(s) 152, 558
BsuTUI ATCGAT 1 cut(s) 1008
BtgI CCRYGG 1 cut(s) 474
BtsCI GGATG 3 cut(s) 60, 900, 1023
BtsIMutI CAGTG 1 cut(s) 328
Cac8I GCNNGC 3 cut(s) 333, 826, 990
CciI TCATGA 1 cut(s) 615
CfoI GCGC 1 cut(s) 386
ClaI ATCGAT 1 cut(s) 1008
CsiI ACCWGGT 1 cut(s) 481
Csp6I GTAC 2 cut(s) 46, 193
CviAII CATG 6 cut(s) 223, 475, 616, 664, 835, 989
CviQI GTAC 2 cut(s) 46, 193
DdeI CTNAG 4 cut(s) 308, 867, 984, 1031
DpnI GATC 1 cut(s) 468
DpnII GATC 1 cut(s) 466
DriI GACNNNNNGTC 1 cut(s) 12
EaeI YGGCCR 1 cut(s) 556
Eam1105I GACNNNNNGTC 1 cut(s) 12
Eco130I CCWWGG 2 cut(s) 474, 904
Eco24I GRGCYC 1 cut(s) 23
Eco57I CTGAAG 1 cut(s) 1038
EcoRII CCWGG 1 cut(s) 481
EcoT14I CCWWGG 2 cut(s) 474, 904
EcoT22I ATGCAT 1 cut(s) 271
EcoT38I GRGCYC 1 cut(s) 23
ErhI CCWWGG 2 cut(s) 474, 904
FaeI CATG 6 cut(s) 226, 478, 619, 667, 838, 992
FaqI GGGAC 1 cut(s) 863
FatI CATG 6 cut(s) 222, 474, 615, 663, 834, 988
FauI CCCGC 1 cut(s) 555
FblI GTMKAC 1 cut(s) 576
Fnu4HI GCNGC 2 cut(s) 261, 501
FokI GGATG 3 cut(s) 67, 887, 1010
FriOI GRGCYC 1 cut(s) 23
Fsp4HI GCNGC 2 cut(s) 261, 501
FspBI CTAG 4 cut(s) 117, 287, 674, 825
GlaI GCGC 1 cut(s) 385
GluI GCNGC 2 cut(s) 261, 501
GsuI CTGGAG 1 cut(s) 55
HaeIII GGCC 2 cut(s) 152, 558
HapII CCGG 1 cut(s) 153
HhaI GCGC 1 cut(s) 386
Hin1II CATG 6 cut(s) 226, 478, 619, 667, 838, 992
Hin6I GCGC 1 cut(s) 384
HinP1I GCGC 1 cut(s) 384
HincII GTYRAC 2 cut(s) 651, 946
HindII GTYRAC 2 cut(s) 651, 946
HinfI GANTC 6 cut(s) 41, 82, 446, 667, 859, 1005
HpaII CCGG 1 cut(s) 153
HphI GGTGA 1 cut(s) 868
Hpy166II GTNNAC 5 cut(s) 577, 651, 679, 804, 946
Hpy188I TCNGA 4 cut(s) 18, 64, 170, 1018
Hpy188III TCNNGA 2 cut(s) 431, 616
Hpy8I GTNNAC 5 cut(s) 577, 651, 679, 804, 946
HpyAV CCTTC 3 cut(s) 130, 928, 1013
HpyCH4III ACNGT 1 cut(s) 950
HpyCH4IV ACGT 2 cut(s) 349, 436
HpyCH4V TGCA 5 cut(s) 269, 275, 335, 500, 992
HpyF10VI GCNNNNNNNGC 3 cut(s) 257, 266, 332
HpyF3I CTNAG 4 cut(s) 308, 867, 984, 1031
HpySE526I ACGT 2 cut(s) 349, 436
Hsp92II CATG 6 cut(s) 226, 478, 619, 667, 838, 992
HspAI GCGC 1 cut(s) 384
Kzo9I GATC 1 cut(s) 466
LmnI GCTCC 1 cut(s) 430
Lsp1109I GCAGC 1 cut(s) 512
LweI GCATC 2 cut(s) 174, 1032
MabI ACCWGGT 1 cut(s) 481
MaeI CTAG 4 cut(s) 117, 287, 674, 825
MaeII ACGT 2 cut(s) 349, 436
MaeIII GTNAC 3 cut(s) 289, 451, 895
MalI GATC 1 cut(s) 468
MboI GATC 1 cut(s) 466
MboII GAAGA 8 cut(s) 87, 142, 145, 358, 688, 911, 914, 1010
MfeI CAATTG 1 cut(s) 411
MflI RGATCY 1 cut(s) 466
MhlI GDGCHC 2 cut(s) 23, 307
MlsI TGGCCA 1 cut(s) 558
MluCI AATT 7 cut(s) 246, 253, 315, 411, 636, 736, 1045
MluNI TGGCCA 1 cut(s) 558
MlyI GAGTC 2 cut(s) 35, 868
MmeI TCCRAC 2 cut(s) 160, 887
MnlI CCTC 9 cut(s) 4, 70, 176, 306, 348, 438, 902, 979, 1038
Mox20I TGGCCA 1 cut(s) 558
Mph1103I ATGCAT 1 cut(s) 271
MscI TGGCCA 1 cut(s) 558
MseI TTAA 1 cut(s) 624
MslI CAYNNNNRTG 4 cut(s) 211, 773, 881, 993
Msp20I TGGCCA 1 cut(s) 558
MspA1I CMGCKG 1 cut(s) 773
MspI CCGG 1 cut(s) 153
MspR9I CCNGG 2 cut(s) 154, 483
MunI CAATTG 1 cut(s) 411
MvaI CCWGG 1 cut(s) 483
MwoI GCNNNNNNNGC 3 cut(s) 257, 266, 332
NciI CCSGG 1 cut(s) 154
NcoI CCATGG 1 cut(s) 474
NdeII GATC 1 cut(s) 466
NheI GCTAGC 1 cut(s) 824
NlaIII CATG 6 cut(s) 226, 478, 619, 667, 838, 992
NlaIV GGNNCC 2 cut(s) 480, 604
NmuCI GTSAC 1 cut(s) 895
NsiI ATGCAT 1 cut(s) 271
NspI RCATGY 1 cut(s) 992
OliI CACNNNNGTG 2 cut(s) 211, 773
PaeI GCATGC 1 cut(s) 992
PagI TCATGA 1 cut(s) 615
PfeI GAWTC 4 cut(s) 82, 446, 667, 1005
PflFI GACNNNGTC 1 cut(s) 858
PkrI GCNGC 2 cut(s) 262, 502
PleI GAGTC 2 cut(s) 35, 867
PpsI GAGTC 2 cut(s) 35, 867
Ppu21I YACGTR 1 cut(s) 350
Psp6I CCWGG 1 cut(s) 481
PspGI CCWGG 1 cut(s) 481
PspN4I GGNNCC 2 cut(s) 480, 604
PsuI RGATCY 1 cut(s) 466
PsyI GACNNNGTC 1 cut(s) 858
PvuII CAGCTG 1 cut(s) 773
RsaI GTAC 2 cut(s) 47, 194
RsaNI GTAC 2 cut(s) 46, 193
RseI CAYNNNNRTG 4 cut(s) 211, 773, 881, 993
SaqAI TTAA 1 cut(s) 624
SatI GCNGC 2 cut(s) 261, 501
Sau3AI GATC 1 cut(s) 466
SchI GAGTC 2 cut(s) 35, 868
ScrFI CCNGG 2 cut(s) 154, 483
SduI GDGCHC 2 cut(s) 23, 307
SexAI ACCWGGT 1 cut(s) 481
SfaNI GCATC 2 cut(s) 174, 1032
SmiMI CAYNNNNRTG 4 cut(s) 211, 773, 881, 993
SmlI CTYRAG 1 cut(s) 429
SmoI CTYRAG 1 cut(s) 429
SpeI ACTAGT 1 cut(s) 286
SphI GCATGC 1 cut(s) 992
Sse9I AATT 7 cut(s) 246, 253, 315, 411, 636, 736, 1045
SsiI CCGC 2 cut(s) 260, 548
SspMI CTAG 4 cut(s) 117, 287, 674, 825
StyD4I CCNGG 2 cut(s) 152, 481
StyI CCWWGG 2 cut(s) 474, 904
TaaI ACNGT 1 cut(s) 950
TaiI ACGT 2 cut(s) 352, 439
TaqI TCGA 1 cut(s) 1008
TaqII GACCGA 2 cut(s) 23, 601
TasI AATT 7 cut(s) 246, 253, 315, 411, 636, 736, 1045
TauI GCSGC 1 cut(s) 263
TfiI GAWTC 4 cut(s) 82, 446, 667, 1005
Tru1I TTAA 1 cut(s) 624
Tru9I TTAA 1 cut(s) 624
TscAI CASTG 1 cut(s) 328
TseFI GTSAC 1 cut(s) 895
TseI GCWGC 1 cut(s) 500
Tsp45I GTSAC 1 cut(s) 895
TspDTI ATGAA 5 cut(s) 112, 350, 680, 749, 1011
TspGWI ACGGA 1 cut(s) 961
TspRI CASTG 1 cut(s) 328
Tth111I GACNNNGTC 1 cut(s) 858
XceI RCATGY 1 cut(s) 992
XmiI GTMKAC 1 cut(s) 576
XspI CTAG 4 cut(s) 117, 287, 674, 825
Zsp2I ATGCAT 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.