Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005990

Physical Location & Seq

Genomic Coordinates Forward (+)

12763902 .. 12765686

Gene Structure 1785 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G34790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGAGTCACCACCACTATACGAGATATCCTCAAGCTCTTCTTCTGAAAAACCTAGACACCATTTCCAATCCCTTGATCTCTTCCCTAACCTCAACCAAAACTCTTGTATCAACAATACCCTAATTGAGCCTTTACCGCTTATTGATCGCATAAACTTGAACTCAAACCTAGACCTAAACCCTAATCCCTTGTATGCGGAAGAAGGAGAGCAAGAGGAGGAAGAAGAAGAAGAAGAAGACCGTGAAGTGGACGTGGACTTACACATCGGCCTTCCTGGTTTTGGTAAACCAAGCAATGATGCTAAACAGCTGAAGAAGAGAAATGGGAAGGAGATCGCCACATATGACGCCGGAAAAGGCATCGAGAATGAACTTTCCGGAAAGGCATACTGGATCCCGGCGCCGGAGCAAATTCTCATAGGGTTCACTCATTTTTCTTGCCATGTATGCTTCAAGACATTCAATCGCTACAACAATCTTCAGATGCACATGTGGGGACATGGTTCACAATACAGGAAAGGACCGGAGTCACTGAAAGGCACACAGCCACGAGCCATGTTAGGGATCCCTTGTTACTGCTGCGTTGAAGGGTGCAGGAACCACATTGACCATCCTCGTTCCAAGCCACTGAAAGACTTTAGGACGCTCCAAACGCACTACAAACGCAAACACGGACACAAACCCTTCTCGTGTCGCCTTTGCGGTAAGCTTTTGGCTGTCAAGGGCGATTGGCGAACACATGAGAAGAATTGTGGAAAACGTTGGGTTTGCGTTTGCGGTTCTGATTTTAAACACAAACGTTCTCTTAAGGACCATGTTAAGGCGTTTGGGTCTGGTCATGGGCCTTATCCAACTGGTTTGTTTGAAGAGCAGGCTTCTAATTCATCTGTCTCCGAGACTTTGTTTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0008152 GO:0009058 GO:0009812 GO:0009813 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0140110 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2

Protein Analysis

303

Amino Acids

34.51

Weight (kDa)

7.24

Isoelectric Point (pI)

55.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_STOP2_3rd	PF23115	191 - 225	4.8e-18	STOP2-like, C2H2-type zinc finger
C2CH-3rd_BIRD-IDD	PF22995	228 - 252	1.1e-09	BIRD-IDD transcription factor, third C2HC zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34790
fragaria_vesca	FvH4_5g37050
malus_domestica	MD02G1313400.v1.1 MD07G1008700.v1.1
prunus_persica	Prupe.1G519400_v2.0.a1
pyrus_communis	pycom07g00750
rosa_chinensis	RchiOBHm_Chr1g0315831 RchiOBHm_Chr7g0243841
rosa_laevigata	RLG00000000829 RLG00000030730
rosa_multiflora	Rmu_sc0003888.1_g000005 Rmu_sc0011973.1_g000005 Rmu_ssc0000154.1_g000005
rosa_roxburghii	Rroxscaffold_3G00221730 Rroxscaffold_4G00331410
rosa_rugosa	Rorug01G0005800 Rorug01G0005900 Rorug07G0321800
rosa_samantha	Rh1AG016800 Rh1BG009300 Rh1DG009800 Rh7AG476400 Rh7BG447600 Rh7CG494600 Rh7DG461700
rosa_wichuraiana	Rw1G000990 Rw7G039760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	400
AccIII	TCCGGA	1 cut(s)	377
AciI	CCGC	4 cut(s)	137, 197, 702, 777
AclI	AACGTT	2 cut(s)	760, 799
AclWI	GGATC	4 cut(s)	388, 401, 559, 572
AcsI	RAATTY	1 cut(s)	411
AcuI	CTGAAG	2 cut(s)	332, 464
AcyI	GRCGYC	2 cut(s)	348, 401
AfiI	CCNNNNNNNGG	5 cut(s)	247, 281, 403, 561, 820
AflII	CTTAAG	1 cut(s)	806
AflIII	ACRYGT	1 cut(s)	489
AgsI	TTSAA	5 cut(s)	160, 454, 463, 587, 866
AjiI	CACGTC	1 cut(s)	253
AjnI	CCWGG	1 cut(s)	274
AluBI	AGCT	3 cut(s)	36, 310, 709
AluI	AGCT	3 cut(s)	36, 310, 709
Alw26I	GTCTC	2 cut(s)	890, 895
AlwI	GGATC	4 cut(s)	388, 401, 559, 572
Aor13HI	TCCGGA	1 cut(s)	377
AoxI	GGCC	2 cut(s)	268, 842
ApeKI	GCWGC	1 cut(s)	579
ApoI	RAATTY	1 cut(s)	411
AspLEI	GCGC	1 cut(s)	403
AspS9I	GGNCC	3 cut(s)	521, 811, 842
AsuC2I	CCSGG	1 cut(s)	398
AvaII	GGWCC	2 cut(s)	521, 811
BaeI	ACNNNNGTAYC	2 cut(s)	91, 124
BamHI	GGATCC	2 cut(s)	393, 564
BanI	GGYRCC	1 cut(s)	400
BauI	CACGAG	2 cut(s)	549, 688
BbsI	GAAGAC	1 cut(s)	243
BbvI	GCAGC	1 cut(s)	566
BccI	CCATC	1 cut(s)	618
BciT130I	CCWGG	1 cut(s)	276
BcnI	CCSGG	1 cut(s)	398
BcoDI	GTCTC	2 cut(s)	890, 895
BfaI	CTAG	2 cut(s)	54, 170
BfoI	RGCGCY	1 cut(s)	404
BfrI	CTTAAG	1 cut(s)	806
BisI	GCNGC	1 cut(s)	580
BlsI	GCNGC	1 cut(s)	581
Bme1390I	CCNGG	2 cut(s)	276, 398
Bme18I	GGWCC	2 cut(s)	521, 811
BmgBI	CACGTC	1 cut(s)	253
BmgT120I	GGNCC	3 cut(s)	521, 811, 842
BmiI	GGNNCC	4 cut(s)	395, 402, 566, 599
BmrFI	CCNGG	2 cut(s)	276, 398
BmsI	GCATC	3 cut(s)	289, 369, 474
BoxI	GACNNNNGTC	1 cut(s)	526
BpiI	GAAGAC	1 cut(s)	243
BplI	GAGNNNNNCTC	2 cut(s)	14, 46
BpuEI	CTTGAG	1 cut(s)	16
BpuMI	CCSGG	1 cut(s)	398
BsaHI	GRCGYC	2 cut(s)	348, 401
BsaWI	WCCGGW	2 cut(s)	377, 523
Bsc4I	CCNNNNNNNGG	5 cut(s)	247, 281, 403, 561, 820
Bse1I	ACTGG	2 cut(s)	395, 859
Bse3DI	GCAATG	1 cut(s)	301
BseAI	TCCGGA	1 cut(s)	377
BseBI	CCWGG	1 cut(s)	276
BseGI	GGATG	1 cut(s)	610
BseLI	CCNNNNNNNGG	5 cut(s)	247, 281, 403, 561, 820
BseMI	GCAATG	1 cut(s)	301
BseNI	ACTGG	2 cut(s)	395, 859
BseRI	GAGGAG	1 cut(s)	230
BseXI	GCAGC	1 cut(s)	566
BsgI	GTGCAG	1 cut(s)	613
BshFI	GGCC	2 cut(s)	270, 844
BshNI	GGYRCC	1 cut(s)	400
BsiSI	CCGG	5 cut(s)	351, 378, 398, 404, 524
BslFI	GGGAC	1 cut(s)	510
BslI	CCNNNNNNNGG	5 cut(s)	247, 281, 403, 561, 820
BsmAI	GTCTC	2 cut(s)	890, 895
BsmFI	GGGAC	1 cut(s)	510
BsnI	GGCC	2 cut(s)	270, 844
Bsp13I	TCCGGA	1 cut(s)	377
Bsp143I	GATC	5 cut(s)	76, 145, 333, 393, 564
BspACI	CCGC	4 cut(s)	137, 197, 702, 777
BspANI	GGCC	2 cut(s)	270, 844
BspEI	TCCGGA	1 cut(s)	377
BspLI	GGNNCC	4 cut(s)	395, 402, 566, 599
BspPI	GGATC	4 cut(s)	388, 401, 559, 572
BspQI	GCTCTTC	2 cut(s)	43, 861
BspT107I	GGYRCC	1 cut(s)	400
BspTI	CTTAAG	1 cut(s)	806
BsrDI	GCAATG	1 cut(s)	301
BsrI	ACTGG	2 cut(s)	395, 859
BssMI	GATC	5 cut(s)	76, 145, 333, 393, 564
BssNI	GRCGYC	2 cut(s)	348, 401
BssSI	CACGAG	2 cut(s)	549, 688
Bst2BI	CACGAG	2 cut(s)	549, 688
Bst2UI	CCWGG	1 cut(s)	276
Bst4CI	ACNGT	1 cut(s)	242
Bst6I	CTCTTC	4 cut(s)	43, 86, 311, 861
BstACI	GRCGYC	2 cut(s)	348, 401
BstAFI	CTTAAG	1 cut(s)	806
BstC8I	GCNNGC	1 cut(s)	873
BstF5I	GGATG	1 cut(s)	610
BstH2I	RGCGCY	1 cut(s)	404
BstHHI	GCGC	1 cut(s)	403
BstKTI	GATC	5 cut(s)	79, 148, 336, 396, 567
BstMAI	GTCTC	2 cut(s)	890, 895
BstMBI	GATC	5 cut(s)	76, 145, 333, 393, 564
BstMWI	GCNNNNNNNGC	3 cut(s)	136, 447, 652
BstNI	CCWGG	1 cut(s)	276
BstNSI	RCATGY	1 cut(s)	493
BstPAI	GACNNNNGTC	1 cut(s)	526
BstSCI	CCNGG	2 cut(s)	274, 396
BstV1I	GCAGC	1 cut(s)	566
BstV2I	GAAGAC	1 cut(s)	243
BstX2I	RGATCY	2 cut(s)	393, 564
BstYI	RGATCY	2 cut(s)	393, 564
BsuRI	GGCC	2 cut(s)	270, 844
BtrI	CACGTC	1 cut(s)	253
BtsCI	GGATG	1 cut(s)	610
BtsIMutI	CAGTG	2 cut(s)	530, 626
Cac8I	GCNNGC	1 cut(s)	873
CfoI	GCGC	1 cut(s)	403
Cfr13I	GGNCC	3 cut(s)	521, 811, 842
CseI	GACGC	2 cut(s)	356, 652
CviAII	CATG	7 cut(s)	443, 490, 500, 556, 740, 815, 839
DinI	GGCGCC	1 cut(s)	402
DpnI	GATC	5 cut(s)	78, 147, 335, 395, 566
DpnII	GATC	5 cut(s)	76, 145, 333, 393, 564
DraI	TTTAAA	1 cut(s)	790
Eam1104I	CTCTTC	4 cut(s)	43, 86, 311, 861
EarI	CTCTTC	4 cut(s)	43, 86, 311, 861
Eco32I	GATATC	1 cut(s)	27
Eco47I	GGWCC	2 cut(s)	521, 811
Eco57I	CTGAAG	2 cut(s)	332, 464
EcoRII	CCWGG	1 cut(s)	274
EcoRV	GATATC	1 cut(s)	27
EgeI	GGCGCC	1 cut(s)	402
EheI	GGCGCC	1 cut(s)	402
FaeI	CATG	7 cut(s)	446, 493, 503, 559, 743, 818, 842
FalI	AAGNNNNNCTT	2 cut(s)	25, 57
FaqI	GGGAC	1 cut(s)	510
FatI	CATG	7 cut(s)	442, 489, 499, 555, 739, 814, 838
FauNDI	CATATG	1 cut(s)	343
Fnu4HI	GCNGC	1 cut(s)	580
FokI	GGATG	1 cut(s)	597
Fsp4HI	GCNGC	1 cut(s)	580
FspBI	CTAG	2 cut(s)	54, 170
GlaI	GCGC	1 cut(s)	402
GluI	GCNGC	1 cut(s)	580
HaeII	RGCGCY	1 cut(s)	404
HaeIII	GGCC	2 cut(s)	270, 844
HapII	CCGG	5 cut(s)	351, 378, 398, 404, 524
HgaI	GACGC	2 cut(s)	356, 652
HhaI	GCGC	1 cut(s)	403
Hin1I	GRCGYC	2 cut(s)	348, 401
Hin1II	CATG	7 cut(s)	446, 493, 503, 559, 743, 818, 842
Hin6I	GCGC	1 cut(s)	401
HinP1I	GCGC	1 cut(s)	401
HindIII	AAGCTT	1 cut(s)	707
HinfI	GANTC	2 cut(s)	5, 527
HpaII	CCGG	5 cut(s)	351, 378, 398, 404, 524
Hpy166II	GTNNAC	5 cut(s)	250, 256, 287, 426, 506
Hpy188I	TCNGA	4 cut(s)	46, 483, 784, 895
Hpy188III	TCNNGA	3 cut(s)	364, 378, 454
Hpy8I	GTNNAC	5 cut(s)	250, 256, 287, 426, 506
HpyAV	CCTTC	5 cut(s)	197, 281, 322, 581, 694
HpyCH4III	ACNGT	1 cut(s)	242
HpyCH4IV	ACGT	3 cut(s)	252, 760, 799
HpyCH4V	TGCA	2 cut(s)	487, 594
HpyF10VI	GCNNNNNNNGC	3 cut(s)	136, 447, 652
HpySE526I	ACGT	3 cut(s)	252, 760, 799
Hsp92I	GRCGYC	2 cut(s)	348, 401
Hsp92II	CATG	7 cut(s)	446, 493, 503, 559, 743, 818, 842
HspAI	GCGC	1 cut(s)	401
KasI	GGCGCC	1 cut(s)	400
Kpn2I	TCCGGA	1 cut(s)	377
Kzo9I	GATC	5 cut(s)	76, 145, 333, 393, 564
LguI	GCTCTTC	2 cut(s)	43, 861
LmnI	GCTCC	2 cut(s)	406, 651
Lsp1109I	GCAGC	1 cut(s)	566
LweI	GCATC	3 cut(s)	289, 369, 474
MaeI	CTAG	2 cut(s)	54, 170
MaeII	ACGT	3 cut(s)	252, 760, 799
MaeIII	GTNAC	3 cut(s)	6, 528, 572
MalI	GATC	5 cut(s)	78, 147, 335, 395, 566
MboI	GATC	5 cut(s)	76, 145, 333, 393, 564
MflI	RGATCY	2 cut(s)	393, 564
MluCI	AATT	4 cut(s)	123, 411, 748, 880
Mly113I	GGCGCC	1 cut(s)	401
MlyI	GAGTC	2 cut(s)	14, 536
MmeI	TCCRAC	1 cut(s)	875
MnlI	CCTC	5 cut(s)	40, 101, 208, 211, 624
MroI	TCCGGA	1 cut(s)	377
MseI	TTAA	4 cut(s)	789, 807, 819, 910
MspA1I	CMGCKG	1 cut(s)	310
MspCI	CTTAAG	1 cut(s)	806
MspI	CCGG	5 cut(s)	351, 378, 398, 404, 524
MspR9I	CCNGG	2 cut(s)	276, 398
MvaI	CCWGG	1 cut(s)	276
MwoI	GCNNNNNNNGC	3 cut(s)	136, 447, 652
NarI	GGCGCC	1 cut(s)	401
NciI	CCSGG	1 cut(s)	398
NdeI	CATATG	1 cut(s)	343
NdeII	GATC	5 cut(s)	76, 145, 333, 393, 564
NlaIII	CATG	7 cut(s)	446, 493, 503, 559, 743, 818, 842
NlaIV	GGNNCC	4 cut(s)	395, 402, 566, 599
NmuCI	GTSAC	2 cut(s)	6, 528
NspI	RCATGY	1 cut(s)	493
PciI	ACATGT	1 cut(s)	489
PciSI	GCTCTTC	2 cut(s)	43, 861
PkrI	GCNGC	1 cut(s)	581
PleI	GAGTC	2 cut(s)	13, 535
PluTI	GGCGCC	1 cut(s)	404
PpsI	GAGTC	2 cut(s)	13, 535
PscI	ACATGT	1 cut(s)	489
PshAI	GACNNNNGTC	1 cut(s)	526
Psp1406I	AACGTT	2 cut(s)	760, 799
Psp6I	CCWGG	1 cut(s)	274
PspGI	CCWGG	1 cut(s)	274
PspN4I	GGNNCC	4 cut(s)	395, 402, 566, 599
PspPI	GGNCC	3 cut(s)	521, 811, 842
PsuI	RGATCY	2 cut(s)	393, 564
PvuII	CAGCTG	1 cut(s)	310
SapI	GCTCTTC	2 cut(s)	43, 861
SaqAI	TTAA	4 cut(s)	789, 807, 819, 910
SatI	GCNGC	1 cut(s)	580
Sau3AI	GATC	5 cut(s)	76, 145, 333, 393, 564
Sau96I	GGNCC	3 cut(s)	521, 811, 842
SchI	GAGTC	2 cut(s)	14, 536
ScrFI	CCNGG	2 cut(s)	276, 398
SfaNI	GCATC	3 cut(s)	289, 369, 474
SfoI	GGCGCC	1 cut(s)	402
SinI	GGWCC	2 cut(s)	521, 811
SmlI	CTYRAG	2 cut(s)	31, 806
SmoI	CTYRAG	2 cut(s)	31, 806
Sse9I	AATT	4 cut(s)	123, 411, 748, 880
SsiI	CCGC	4 cut(s)	137, 197, 702, 777
SspDI	GGCGCC	1 cut(s)	400
SspMI	CTAG	2 cut(s)	54, 170
StyD4I	CCNGG	2 cut(s)	274, 396
TaaI	ACNGT	1 cut(s)	242
TaiI	ACGT	3 cut(s)	255, 763, 802
TaqI	TCGA	1 cut(s)	363
TasI	AATT	4 cut(s)	123, 411, 748, 880
Tru1I	TTAA	4 cut(s)	789, 807, 819, 910
Tru9I	TTAA	4 cut(s)	789, 807, 819, 910
TscAI	CASTG	2 cut(s)	537, 633
TseFI	GTSAC	2 cut(s)	6, 528
TseI	GCWGC	1 cut(s)	579
Tsp45I	GTSAC	2 cut(s)	6, 528
TspDTI	ATGAA	2 cut(s)	384, 873
TspGWI	ACGGA	1 cut(s)	687
TspRI	CASTG	2 cut(s)	537, 633
Vha464I	CTTAAG	1 cut(s)	806
VpaK11BI	GGWCC	2 cut(s)	521, 811
XapI	RAATTY	1 cut(s)	411
XceI	RCATGY	1 cut(s)	493
XspI	CTAG	2 cut(s)	54, 170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.