Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0005990

Physical Location & Seq

Genomic Coordinates Reverse (-)

27117158 .. 27119242

Gene Structure 2085 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g37050.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGAGCCGTCTGAAATTTCATCTAGATTTGCTAGGACCCTCAATCTGTTTCCGAATGAGAAGGACCCGAACGAAGTACCCGATTCCCATGATTTAGGTTTTTCATCCTCTGAAAACCCTACATCTTTCAGTGAATCAGATCATAACAAAGAGGATGAAGTTACTGTAGCCTTGCACATTGGCCTTCCTGAATACTCAGACGGCTCTGCGAATTCCACTGAGAAGGAAGTATCAGATCACGAAAATGTGACTGCAGAACAGAAGTACTGGATTCCAACTCGGGAACAGATCATCATTGGCTTCACTCATTTTTCTTGCCATGTCTGCTTCAAAACATTTAACCGCTACAACAATCTGCAGATGCACATGTGGGGGCATGGATCGCAGTATCGAAGAGGACCGGAGTCCCTGAAGGGAACACAACCTCGAGCGATGTTAGGCCTCCCATGCTATTGCTGTGCAGAAGGCTGCAAAAACAACATAGACTACCCAAGAGCAAAACCCTTGAAAGACTTTCGAACACTTCAAACTCACTACAAGAGAAAGCATGGCATCAAACCTTTCATGTGTAGGAAGTGTGGGAAGTTGCTGGCGGTGAAAGGTGATTGGAGGACTCATGAGAAGAATTGTGGCAAGCGCTGGCTTTGCTCTTGTGGTTCAGATTTCAAGCACAAGAGGTCGTTGAAAGATCATATGAAGGCCTTTGGGTCTGGTCATAGTCCTTTCCCTCCTACCTCTTTAGATGAGGATAGTACTGCAGCTTCGTTTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0008152 GO:0009058 GO:0009812 GO:0009813 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0140110 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2

Protein Analysis

258

Amino Acids

29.28

Weight (kDa)

8.25

Isoelectric Point (pI)

50.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_STOP2_3rd	PF23115	150 - 184	3.1e-19	STOP2-like, C2H2-type zinc finger
C2CH-3rd_BIRD-IDD	PF22995	187 - 211	9.8e-11	BIRD-IDD transcription factor, third C2HC zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34790
fragaria_vesca	FvH4_5g37050
malus_domestica	MD02G1313400.v1.1 MD07G1008700.v1.1
prunus_persica	Prupe.1G519400_v2.0.a1
pyrus_communis	pycom07g00750
rosa_chinensis	RchiOBHm_Chr1g0315831 RchiOBHm_Chr7g0243841
rosa_laevigata	RLG00000000829 RLG00000030730
rosa_multiflora	Rmu_sc0003888.1_g000005 Rmu_sc0011973.1_g000005 Rmu_ssc0000154.1_g000005
rosa_roxburghii	Rroxscaffold_3G00221730 Rroxscaffold_4G00331410
rosa_rugosa	Rorug01G0005800 Rorug01G0005900 Rorug07G0321800
rosa_samantha	Rh1AG016800 Rh1BG009300 Rh1DG009800 Rh7AG476400 Rh7BG447600 Rh7CG494600 Rh7DG461700
rosa_wichuraiana	Rw1G000990 Rw7G039760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	343, 593
AclWI	GGATC	1 cut(s)	388
AcsI	RAATTY	2 cut(s)	15, 211
AcuI	CTGAAG	1 cut(s)	431
AfaI	GTAC	3 cut(s)	78, 266, 754
AfeI	AGCGCT	1 cut(s)	638
AflIII	ACRYGT	1 cut(s)	366
AgsI	TTSAA	5 cut(s)	331, 508, 527, 667, 685
AluBI	AGCT	1 cut(s)	761
AluI	AGCT	1 cut(s)	761
AlwI	GGATC	1 cut(s)	388
Ama87I	CYCGRG	2 cut(s)	279, 426
Aor51HI	AGCGCT	1 cut(s)	638
AoxI	GGCC	3 cut(s)	181, 439, 699
ApeKI	GCWGC	2 cut(s)	468, 758
ApoI	RAATTY	2 cut(s)	15, 211
AspLEI	GCGC	1 cut(s)	639
AspS9I	GGNCC	3 cut(s)	36, 64, 398
AsuHPI	GGTGA	2 cut(s)	607, 614
AsuII	TTCGAA	1 cut(s)	517
AvaI	CYCGRG	2 cut(s)	279, 426
AvaII	GGWCC	3 cut(s)	36, 64, 398
BarI	GAAGNNNNNNTAC	1 cut(s)	745
BbvI	GCAGC	2 cut(s)	455, 770
BceAI	ACGGC	1 cut(s)	217
BfaI	CTAG	2 cut(s)	24, 33
BfmI	CTRYAG	4 cut(s)	165, 252, 356, 756
BfoI	RGCGCY	1 cut(s)	640
BisI	GCNGC	2 cut(s)	469, 759
BlsI	GCNGC	2 cut(s)	470, 760
BmcAI	AGTACT	2 cut(s)	266, 754
Bme18I	GGWCC	3 cut(s)	36, 64, 398
BmeT110I	CYCGRG	2 cut(s)	279, 426
BmgT120I	GGNCC	3 cut(s)	36, 64, 398
BmiI	GGNNCC	3 cut(s)	6, 38, 66
BmsI	GCATC	2 cut(s)	351, 561
BoxI	GACNNNNGTC	1 cut(s)	403
Bpu14I	TTCGAA	1 cut(s)	517
BsaWI	WCCGGW	1 cut(s)	400
Bse1I	ACTGG	1 cut(s)	272
BseGI	GGATG	2 cut(s)	104, 160
BseMII	CTCAG	2 cut(s)	210, 210
BseNI	ACTGG	1 cut(s)	272
BseXI	GCAGC	2 cut(s)	455, 770
BsgI	GTGCAG	1 cut(s)	480
BshFI	GGCC	3 cut(s)	183, 441, 701
BsiHKCI	CYCGRG	2 cut(s)	279, 426
BsiSI	CCGG	1 cut(s)	401
BslFI	GGGAC	1 cut(s)	391
BsmFI	GGGAC	1 cut(s)	391
BsnI	GGCC	3 cut(s)	183, 441, 701
BsoBI	CYCGRG	2 cut(s)	279, 426
Bsp119I	TTCGAA	1 cut(s)	517
Bsp143I	GATC	5 cut(s)	139, 235, 288, 380, 688
BspACI	CCGC	2 cut(s)	343, 593
BspANI	GGCC	3 cut(s)	183, 441, 701
BspCNI	CTCAG	2 cut(s)	209, 211
BspHI	TCATGA	1 cut(s)	616
BspLI	GGNNCC	3 cut(s)	6, 38, 66
BspMAI	CTGCAG	3 cut(s)	256, 360, 760
BspPI	GGATC	1 cut(s)	388
BspT104I	TTCGAA	1 cut(s)	517
BsrI	ACTGG	1 cut(s)	272
BssMI	GATC	5 cut(s)	139, 235, 288, 380, 688
Bst4CI	ACNGT	1 cut(s)	166
Bst6I	CTCTTC	1 cut(s)	388
BstBI	TTCGAA	1 cut(s)	517
BstC8I	GCNNGC	3 cut(s)	591, 635, 641
BstDEI	CTNAG	2 cut(s)	196, 219
BstF5I	GGATG	2 cut(s)	104, 160
BstH2I	RGCGCY	1 cut(s)	640
BstHHI	GCGC	1 cut(s)	639
BstKTI	GATC	5 cut(s)	142, 238, 291, 383, 691
BstMBI	GATC	5 cut(s)	139, 235, 288, 380, 688
BstMWI	GCNNNNNNNGC	4 cut(s)	324, 382, 447, 645
BstNSI	RCATGY	1 cut(s)	370
BstPAI	GACNNNNGTC	1 cut(s)	403
BstSFI	CTRYAG	4 cut(s)	165, 252, 356, 756
BstV1I	GCAGC	2 cut(s)	455, 770
BsuRI	GGCC	3 cut(s)	183, 441, 701
BtgZI	GCGATG	1 cut(s)	446
BtsCI	GGATG	2 cut(s)	104, 160
BtsIMutI	CAGTG	2 cut(s)	136, 216
Cac8I	GCNNGC	3 cut(s)	591, 635, 641
CciI	TCATGA	1 cut(s)	616
CfoI	GCGC	1 cut(s)	639
Cfr13I	GGNCC	3 cut(s)	36, 64, 398
Csp6I	GTAC	3 cut(s)	77, 265, 753
CviAII	CATG	8 cut(s)	89, 320, 367, 377, 447, 548, 565, 617
CviQI	GTAC	3 cut(s)	77, 265, 753
DdeI	CTNAG	2 cut(s)	196, 219
DpnI	GATC	5 cut(s)	141, 237, 290, 382, 690
DpnII	GATC	5 cut(s)	139, 235, 288, 380, 688
Eam1104I	CTCTTC	1 cut(s)	388
EarI	CTCTTC	1 cut(s)	388
Eco147I	AGGCCT	2 cut(s)	441, 701
Eco47I	GGWCC	3 cut(s)	36, 64, 398
Eco47III	AGCGCT	1 cut(s)	638
Eco57I	CTGAAG	1 cut(s)	431
Eco88I	CYCGRG	2 cut(s)	279, 426
EcoO109I	RGGNCCY	2 cut(s)	36, 64
EcoRI	GAATTC	1 cut(s)	211
FaeI	CATG	8 cut(s)	92, 323, 370, 380, 450, 551, 568, 620
FaqI	GGGAC	1 cut(s)	391
FatI	CATG	8 cut(s)	88, 319, 366, 376, 446, 547, 564, 616
FauNDI	CATATG	1 cut(s)	693
Fnu4HI	GCNGC	2 cut(s)	469, 759
FokI	GGATG	2 cut(s)	91, 167
Fsp4HI	GCNGC	2 cut(s)	469, 759
FspBI	CTAG	2 cut(s)	24, 33
GlaI	GCGC	1 cut(s)	638
GluI	GCNGC	2 cut(s)	469, 759
HaeII	RGCGCY	1 cut(s)	640
HaeIII	GGCC	3 cut(s)	183, 441, 701
HapII	CCGG	1 cut(s)	401
HhaI	GCGC	1 cut(s)	639
Hin1II	CATG	8 cut(s)	92, 323, 370, 380, 450, 551, 568, 620
Hin6I	GCGC	1 cut(s)	637
HinP1I	GCGC	1 cut(s)	637
HinfI	GANTC	5 cut(s)	83, 134, 271, 404, 613
HpaII	CCGG	1 cut(s)	401
HphI	GGTGA	2 cut(s)	607, 614
Hpy188I	TCNGA	7 cut(s)	13, 54, 112, 139, 199, 235, 661
Hpy188III	TCNNGA	5 cut(s)	24, 188, 239, 281, 617
HpyAV	CCTTC	6 cut(s)	55, 194, 217, 406, 458, 691
HpyCH4III	ACNGT	1 cut(s)	166
HpyCH4V	TGCA	7 cut(s)	175, 254, 358, 364, 461, 471, 758
HpyF10VI	GCNNNNNNNGC	4 cut(s)	324, 382, 447, 645
HpyF3I	CTNAG	2 cut(s)	196, 219
Hsp92II	CATG	8 cut(s)	92, 323, 370, 380, 450, 551, 568, 620
HspAI	GCGC	1 cut(s)	637
Kzo9I	GATC	5 cut(s)	139, 235, 288, 380, 688
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	7 cut(s)	201, 253, 414, 422, 575, 625, 696
Lsp1109I	GCAGC	2 cut(s)	455, 770
LweI	GCATC	2 cut(s)	351, 561
MaeI	CTAG	2 cut(s)	24, 33
MaeIII	GTNAC	2 cut(s)	160, 247
MalI	GATC	5 cut(s)	141, 237, 290, 382, 690
MboI	GATC	5 cut(s)	139, 235, 288, 380, 688
MboII	GAAGA	2 cut(s)	405, 634
MluCI	AATT	3 cut(s)	15, 211, 625
MlyI	GAGTC	2 cut(s)	413, 607
MmeI	TCCRAC	1 cut(s)	299
MseI	TTAA	2 cut(s)	339, 772
MslI	CAYNNNNRTG	1 cut(s)	243
MspI	CCGG	1 cut(s)	401
MwoI	GCNNNNNNNGC	4 cut(s)	324, 382, 447, 645
NdeI	CATATG	1 cut(s)	693
NdeII	GATC	5 cut(s)	139, 235, 288, 380, 688
NlaIII	CATG	8 cut(s)	92, 323, 370, 380, 450, 551, 568, 620
NlaIV	GGNNCC	3 cut(s)	6, 38, 66
NmuCI	GTSAC	1 cut(s)	247
NspI	RCATGY	1 cut(s)	370
NspV	TTCGAA	1 cut(s)	517
PaeR7I	CTCGAG	1 cut(s)	426
PagI	TCATGA	1 cut(s)	616
PceI	AGGCCT	2 cut(s)	441, 701
PciI	ACATGT	1 cut(s)	366
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PfeI	GAWTC	3 cut(s)	83, 134, 271
PkrI	GCNGC	2 cut(s)	470, 760
PleI	GAGTC	2 cut(s)	412, 607
PpsI	GAGTC	2 cut(s)	412, 607
PpuMI	RGGWCCY	2 cut(s)	36, 64
PscI	ACATGT	1 cut(s)	366
PshAI	GACNNNNGTC	1 cut(s)	403
Psp5II	RGGWCCY	2 cut(s)	36, 64
PspN4I	GGNNCC	3 cut(s)	6, 38, 66
PspPI	GGNCC	3 cut(s)	36, 64, 398
PspPPI	RGGWCCY	2 cut(s)	36, 64
PspXI	VCTCGAGB	1 cut(s)	426
PstI	CTGCAG	3 cut(s)	256, 360, 760
RsaI	GTAC	3 cut(s)	78, 266, 754
RsaNI	GTAC	3 cut(s)	77, 265, 753
RseI	CAYNNNNRTG	1 cut(s)	243
SaqAI	TTAA	2 cut(s)	339, 772
SatI	GCNGC	2 cut(s)	469, 759
Sau3AI	GATC	5 cut(s)	139, 235, 288, 380, 688
Sau96I	GGNCC	3 cut(s)	36, 64, 398
ScaI	AGTACT	2 cut(s)	266, 754
SchI	GAGTC	2 cut(s)	413, 607
SetI	ASST	7 cut(s)	100, 427, 562, 604, 680, 737, 763
SfaNI	GCATC	2 cut(s)	351, 561
SfcI	CTRYAG	4 cut(s)	165, 252, 356, 756
Sfr274I	CTCGAG	1 cut(s)	426
SfuI	TTCGAA	1 cut(s)	517
SinI	GGWCC	3 cut(s)	36, 64, 398
SlaI	CTCGAG	1 cut(s)	426
SmiMI	CAYNNNNRTG	1 cut(s)	243
SmlI	CTYRAG	1 cut(s)	426
SmoI	CTYRAG	1 cut(s)	426
Sse9I	AATT	3 cut(s)	15, 211, 625
SseBI	AGGCCT	2 cut(s)	441, 701
SsiI	CCGC	2 cut(s)	343, 593
SspMI	CTAG	2 cut(s)	24, 33
StuI	AGGCCT	2 cut(s)	441, 701
TaaI	ACNGT	1 cut(s)	166
TaqI	TCGA	3 cut(s)	391, 427, 517
TasI	AATT	3 cut(s)	15, 211, 625
TatI	WGTACW	2 cut(s)	264, 752
TfiI	GAWTC	3 cut(s)	83, 134, 271
Tru1I	TTAA	2 cut(s)	339, 772
Tru9I	TTAA	2 cut(s)	339, 772
TscAI	CASTG	2 cut(s)	136, 223
TseFI	GTSAC	1 cut(s)	247
TseI	GCWGC	2 cut(s)	468, 758
Tsp45I	GTSAC	1 cut(s)	247
TspDTI	ATGAA	5 cut(s)	9, 93, 171, 553, 710
TspRI	CASTG	2 cut(s)	136, 223
VpaK11BI	GGWCC	3 cut(s)	36, 64, 398
XapI	RAATTY	2 cut(s)	15, 211
XbaI	TCTAGA	1 cut(s)	23
XceI	RCATGY	1 cut(s)	370
XhoI	CTCGAG	1 cut(s)	426
XspI	CTAG	2 cut(s)	24, 33
ZrmI	AGTACT	2 cut(s)	266, 754

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.