Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0005990

Physical Location & Seq

Genomic Coordinates Forward (+)

66603705 .. 66605590

Gene Structure 1886 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030730

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGACAGACCCTAAAAATTACAACTCCAGCGGCTTCAATAATAGATGGATCAACTTCATGCCTCCCCATCCACAATACTACTGCTCTGAATCCACTTCGTCTTTCAATTCCAATCCTTATCCACATCATCAGTTCTCTCATAACTTGATGTGTGACAACTCCTACTGTGTTGTTCAGAGCCAACCCTCACCATCTCACGATTCTCATCTGAAAGAAGCTCTGCCTTTAATAAACAAACTAAACCCTAGAGGAGCACAATTAGAGGAAGAGGAAGAGGGCACAAGTCACAACCCCAAGAACAAAGCTGATGTCGATGATGATGTAGCCCTACGTATAGGCCTCCCAAGTAGTAATTATAGTATTGATCCAGGTAGTGGTGGTATGGAAATGGAAGTAGATCAATCTCATGATGAATTAGGAGCAGCTGCGAGTGTGGACAGATTAAACAAGGGTCATTACTGGATTCCCACCCCTTCTCAGATTCTATATGGCCCAACTCAATTCTCATGTCCTCTGTGCTCCAAAACCTTTAACAGATACAATAACTTGCAGATGCATATGTGGGGACATGGATCTCAGTACAGGAAAGGACCGGACTCTCTAAAAGGAAATAAGCCCACAGCAATGCTGAGACTCCCTTGCTACTGCTGCGCACAAGGTTGCAAGCACAACATTGACCACCCAAGAGCCAAACAACTCAAGGACTTCAGAACTCTCCAAGCACATTACAAGAGAAAGCATGGGATAAGGTCCTTCATCTGCAAAAGATGTGGCAAGTCACTTGCTCTGAAAGGTGATTGGAGAACTCATGAAAAAAACTGTGGCAAGATTTGGCATTGCATTTGCGGCTCTGAATTTAAGCACAAGAGATCTCTCAAAGACCACATTAAGGCCTTCGGTGAAGGACATGGAGCTTTCGATATCGAGTATTTTGAAGAGGATGATGAACCAGCATCTGAAATAGAACACATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0008152 GO:0009058 GO:0009812 GO:0009813 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0140110 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2 zf-C2H2_4 zf-C2H2_6

Protein Analysis

325

Amino Acids

36.9

Weight (kDa)

7.3

Isoelectric Point (pI)

53.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_STOP2_3rd	PF23115	214 - 248	5.2e-16	STOP2-like, C2H2-type zinc finger
C2CH-3rd_BIRD-IDD	PF22995	252 - 275	8.7e-10	BIRD-IDD transcription factor, third C2HC zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34790
fragaria_vesca	FvH4_5g37050
malus_domestica	MD02G1313400.v1.1 MD07G1008700.v1.1
prunus_persica	Prupe.1G519400_v2.0.a1
pyrus_communis	pycom07g00750
rosa_chinensis	RchiOBHm_Chr1g0315831 RchiOBHm_Chr7g0243841
rosa_laevigata	RLG00000000829 RLG00000030730
rosa_multiflora	Rmu_sc0003888.1_g000005 Rmu_sc0011973.1_g000005 Rmu_ssc0000154.1_g000005
rosa_roxburghii	Rroxscaffold_3G00221730 Rroxscaffold_4G00331410
rosa_rugosa	Rorug01G0005800 Rorug01G0005900 Rorug07G0321800
rosa_samantha	Rh1AG016800 Rh1BG009300 Rh1DG009800 Rh7AG476400 Rh7BG447600 Rh7CG494600 Rh7DG461700
rosa_wichuraiana	Rw1G000990 Rw7G039760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	652
AccB7I	CCANNNNNTGG	1 cut(s)	374
AciI	CCGC	2 cut(s)	30, 846
AclWI	GGATC	3 cut(s)	56, 359, 580
AcsI	RAATTY	1 cut(s)	854
AcuI	CTGAAG	1 cut(s)	691
AfaI	GTAC	1 cut(s)	581
AfiI	CCNNNNNNNGG	2 cut(s)	374, 889
AflIII	ACRYGT	1 cut(s)	969
AgsI	TTSAA	3 cut(s)	37, 106, 935
AjnI	CCWGG	1 cut(s)	367
AluBI	AGCT	4 cut(s)	218, 305, 425, 914
AluI	AGCT	4 cut(s)	218, 305, 425, 914
Alw21I	GWGCWC	2 cut(s)	256, 521
Alw26I	GTCTC	1 cut(s)	625
AlwI	GGATC	3 cut(s)	56, 359, 580
AlwNI	CAGNNNCTG	1 cut(s)	956
AoxI	GGCC	3 cut(s)	337, 490, 891
ApeKI	GCWGC	3 cut(s)	422, 425, 648
ApoI	RAATTY	1 cut(s)	854
ArsI	GACNNNNNNTTYG	2 cut(s)	294, 326
AspLEI	GCGC	1 cut(s)	653
AspS9I	GGNCC	3 cut(s)	491, 590, 750
AsuHPI	GGTGA	3 cut(s)	180, 806, 911
AvaII	GGWCC	2 cut(s)	590, 750
BaeGI	GKGCMC	1 cut(s)	281
Bbv12I	GWGCWC	2 cut(s)	256, 521
BbvI	GCAGC	3 cut(s)	412, 434, 635
BccI	CCATC	3 cut(s)	39, 75, 199
BciT130I	CCWGG	1 cut(s)	369
BcoDI	GTCTC	1 cut(s)	625
BfaI	CTAG	1 cut(s)	246
BglII	AGATCT	1 cut(s)	869
BisI	GCNGC	5 cut(s)	31, 423, 426, 649, 847
BlsI	GCNGC	5 cut(s)	32, 424, 427, 650, 848
Bme1390I	CCNGG	1 cut(s)	369
Bme18I	GGWCC	2 cut(s)	590, 750
BmgT120I	GGNCC	3 cut(s)	491, 590, 750
BmrFI	CCNGG	1 cut(s)	369
BmsI	GCATC	2 cut(s)	543, 962
BpmI	CTGGAG	1 cut(s)	10
BpuEI	CTTGAG	1 cut(s)	683
BsaAI	YACGTR	1 cut(s)	332
BsaBI	GATNNNNATC	1 cut(s)	204
BsaWI	WCCGGW	1 cut(s)	592
Bsc4I	CCNNNNNNNGG	2 cut(s)	374, 889
Bse1I	ACTGG	1 cut(s)	464
Bse3DI	GCAATG	2 cut(s)	630, 835
Bse8I	GATNNNNATC	1 cut(s)	204
BseBI	CCWGG	1 cut(s)	369
BseGI	GGATG	2 cut(s)	67, 946
BseJI	GATNNNNATC	1 cut(s)	204
BseLI	CCNNNNNNNGG	2 cut(s)	374, 889
BseMI	GCAATG	2 cut(s)	630, 835
BseMII	CTCAG	3 cut(s)	491, 590, 620
BseNI	ACTGG	1 cut(s)	464
BseRI	GAGGAG	1 cut(s)	264
BseSI	GKGCMC	1 cut(s)	281
BseXI	GCAGC	3 cut(s)	412, 434, 635
BshFI	GGCC	3 cut(s)	339, 492, 893
BsiHKAI	GWGCWC	2 cut(s)	256, 521
BsiSI	CCGG	1 cut(s)	593
BslFI	GGGAC	1 cut(s)	579
BslI	CCNNNNNNNGG	2 cut(s)	374, 889
BsmAI	GTCTC	1 cut(s)	625
BsmFI	GGGAC	1 cut(s)	579
BsnI	GGCC	3 cut(s)	339, 492, 893
Bsp1286I	GDGCHC	3 cut(s)	256, 281, 521
Bsp143I	GATC	5 cut(s)	48, 364, 397, 572, 869
BspACI	CCGC	2 cut(s)	30, 846
BspANI	GGCC	3 cut(s)	339, 492, 893
BspCNI	CTCAG	3 cut(s)	490, 589, 621
BspHI	TCATGA	2 cut(s)	406, 808
BspPI	GGATC	3 cut(s)	56, 359, 580
BsrDI	GCAATG	2 cut(s)	630, 835
BsrI	ACTGG	1 cut(s)	464
BssMI	GATC	5 cut(s)	48, 364, 397, 572, 869
Bst2UI	CCWGG	1 cut(s)	369
Bst4CI	ACNGT	2 cut(s)	167, 821
Bst6I	CTCTTC	3 cut(s)	261, 267, 930
BstBAI	YACGTR	1 cut(s)	332
BstC8I	GCNNGC	1 cut(s)	665
BstDEI	CTNAG	3 cut(s)	477, 576, 629
BstF5I	GGATG	2 cut(s)	67, 946
BstHHI	GCGC	1 cut(s)	653
BstKTI	GATC	5 cut(s)	51, 367, 400, 575, 872
BstMAI	GTCTC	1 cut(s)	625
BstMBI	GATC	5 cut(s)	48, 364, 397, 572, 869
BstMWI	GCNNNNNNNGC	2 cut(s)	648, 846
BstNI	CCWGG	1 cut(s)	369
BstNSI	RCATGY	1 cut(s)	973
BstSCI	CCNGG	1 cut(s)	367
BstSLI	GKGCMC	1 cut(s)	281
BstSNI	TACGTA	1 cut(s)	332
BstV1I	GCAGC	3 cut(s)	412, 434, 635
BstX2I	RGATCY	2 cut(s)	572, 869
BstYI	RGATCY	2 cut(s)	572, 869
BsuRI	GGCC	3 cut(s)	339, 492, 893
BtsCI	GGATG	2 cut(s)	67, 946
Cac8I	GCNNGC	1 cut(s)	665
CaiI	CAGNNNCTG	1 cut(s)	956
CciI	TCATGA	2 cut(s)	406, 808
CfoI	GCGC	1 cut(s)	653
Cfr13I	GGNCC	3 cut(s)	491, 590, 750
Csp6I	GTAC	1 cut(s)	580
CspCI	CAANNNNNGTGG	2 cut(s)	751, 786
CviAII	CATG	8 cut(s)	58, 407, 507, 569, 740, 809, 908, 970
CviQI	GTAC	1 cut(s)	580
DdeI	CTNAG	3 cut(s)	477, 576, 629
DpnI	GATC	5 cut(s)	50, 366, 399, 574, 871
DpnII	GATC	5 cut(s)	48, 364, 397, 572, 869
Eam1104I	CTCTTC	3 cut(s)	261, 267, 930
EarI	CTCTTC	3 cut(s)	261, 267, 930
Eco105I	TACGTA	1 cut(s)	332
Eco147I	AGGCCT	2 cut(s)	339, 893
Eco32I	GATATC	1 cut(s)	922
Eco47I	GGWCC	2 cut(s)	590, 750
Eco57I	CTGAAG	1 cut(s)	691
EcoO109I	RGGNCCY	1 cut(s)	750
EcoRII	CCWGG	1 cut(s)	367
EcoRV	GATATC	1 cut(s)	922
EcoT22I	ATGCAT	1 cut(s)	558
FaeI	CATG	8 cut(s)	61, 410, 510, 572, 743, 812, 911, 973
FaqI	GGGAC	1 cut(s)	579
FatI	CATG	8 cut(s)	57, 406, 506, 568, 739, 808, 907, 969
FauNDI	CATATG	1 cut(s)	558
Fnu4HI	GCNGC	5 cut(s)	31, 423, 426, 649, 847
FokI	GGATG	2 cut(s)	54, 953
Fsp4HI	GCNGC	5 cut(s)	31, 423, 426, 649, 847
FspBI	CTAG	1 cut(s)	246
FspI	TGCGCA	1 cut(s)	652
GlaI	GCGC	1 cut(s)	652
GluI	GCNGC	5 cut(s)	31, 423, 426, 649, 847
GsuI	CTGGAG	1 cut(s)	10
HaeIII	GGCC	3 cut(s)	339, 492, 893
HapII	CCGG	1 cut(s)	593
HhaI	GCGC	1 cut(s)	653
Hin1II	CATG	8 cut(s)	61, 410, 510, 572, 743, 812, 911, 973
Hin6I	GCGC	1 cut(s)	651
HinP1I	GCGC	1 cut(s)	651
HinfI	GANTC	6 cut(s)	89, 200, 463, 481, 596, 633
HpaII	CCGG	1 cut(s)	593
HphI	GGTGA	3 cut(s)	180, 806, 911
Hpy166II	GTNNAC	1 cut(s)	436
Hpy188I	TCNGA	8 cut(s)	88, 177, 210, 480, 710, 789, 853, 958
Hpy188III	TCNNGA	3 cut(s)	197, 407, 809
Hpy8I	GTNNAC	1 cut(s)	436
HpyAV	CCTTC	4 cut(s)	483, 763, 896, 904
HpyCH4III	ACNGT	2 cut(s)	167, 821
HpyCH4IV	ACGT	1 cut(s)	331
HpyCH4V	TGCA	5 cut(s)	550, 556, 663, 762, 840
HpyF10VI	GCNNNNNNNGC	2 cut(s)	648, 846
HpyF3I	CTNAG	3 cut(s)	477, 576, 629
HpySE526I	ACGT	1 cut(s)	331
Hsp92II	CATG	8 cut(s)	61, 410, 510, 572, 743, 812, 911, 973
HspAI	GCGC	1 cut(s)	651
Kzo9I	GATC	5 cut(s)	48, 364, 397, 572, 869
LmnI	GCTCC	4 cut(s)	251, 419, 524, 911
LpnPI	CCDG	7 cut(s)	40, 354, 381, 445, 568, 606, 963
Lsp1109I	GCAGC	3 cut(s)	412, 434, 635
LweI	GCATC	2 cut(s)	543, 962
MaeI	CTAG	1 cut(s)	246
MaeII	ACGT	1 cut(s)	331
MaeIII	GTNAC	3 cut(s)	152, 284, 777
MalI	GATC	5 cut(s)	50, 366, 399, 574, 871
MboI	GATC	5 cut(s)	48, 364, 397, 572, 869
MboII	GAAGA	3 cut(s)	278, 284, 947
MflI	RGATCY	2 cut(s)	572, 869
MhlI	GDGCHC	3 cut(s)	256, 281, 521
MluCI	AATT	7 cut(s)	16, 106, 257, 352, 413, 500, 854
MlyI	GAGTC	2 cut(s)	590, 627
MnlI	CCTC	9 cut(s)	72, 196, 242, 256, 262, 268, 350, 522, 931
Mph1103I	ATGCAT	1 cut(s)	558
MseI	TTAA	5 cut(s)	227, 443, 531, 858, 888
MslI	CAYNNNNRTG	1 cut(s)	623
MspA1I	CMGCKG	2 cut(s)	30, 425
MspI	CCGG	1 cut(s)	593
MspR9I	CCNGG	1 cut(s)	369
MvaI	CCWGG	1 cut(s)	369
MwoI	GCNNNNNNNGC	2 cut(s)	648, 846
NdeI	CATATG	1 cut(s)	558
NdeII	GATC	5 cut(s)	48, 364, 397, 572, 869
NlaIII	CATG	8 cut(s)	61, 410, 510, 572, 743, 812, 911, 973
NmuCI	GTSAC	3 cut(s)	152, 284, 777
NsbI	TGCGCA	1 cut(s)	652
NsiI	ATGCAT	1 cut(s)	558
NspI	RCATGY	1 cut(s)	973
PagI	TCATGA	2 cut(s)	406, 808
PceI	AGGCCT	2 cut(s)	339, 893
PciI	ACATGT	1 cut(s)	969
PfeI	GAWTC	4 cut(s)	89, 200, 463, 481
PflMI	CCANNNNNTGG	1 cut(s)	374
PkrI	GCNGC	5 cut(s)	32, 424, 427, 650, 848
PleI	GAGTC	2 cut(s)	590, 627
PpsI	GAGTC	2 cut(s)	590, 627
Ppu21I	YACGTR	1 cut(s)	332
PpuMI	RGGWCCY	1 cut(s)	750
PscI	ACATGT	1 cut(s)	969
Psp5II	RGGWCCY	1 cut(s)	750
Psp6I	CCWGG	1 cut(s)	367
PspGI	CCWGG	1 cut(s)	367
PspPI	GGNCC	3 cut(s)	491, 590, 750
PspPPI	RGGWCCY	1 cut(s)	750
PstNI	CAGNNNCTG	1 cut(s)	956
PsuI	RGATCY	2 cut(s)	572, 869
PvuII	CAGCTG	1 cut(s)	425
RsaI	GTAC	1 cut(s)	581
RsaNI	GTAC	1 cut(s)	580
RseI	CAYNNNNRTG	1 cut(s)	623
SaqAI	TTAA	5 cut(s)	227, 443, 531, 858, 888
SatI	GCNGC	5 cut(s)	31, 423, 426, 649, 847
Sau3AI	GATC	5 cut(s)	48, 364, 397, 572, 869
Sau96I	GGNCC	3 cut(s)	491, 590, 750
SchI	GAGTC	2 cut(s)	590, 627
ScrFI	CCNGG	1 cut(s)	369
SduI	GDGCHC	3 cut(s)	256, 281, 521
SfaNI	GCATC	2 cut(s)	543, 962
SinI	GGWCC	2 cut(s)	590, 750
SmiMI	CAYNNNNRTG	1 cut(s)	623
SmlI	CTYRAG	1 cut(s)	698
SmoI	CTYRAG	1 cut(s)	698
SnaBI	TACGTA	1 cut(s)	332
Sse9I	AATT	7 cut(s)	16, 106, 257, 352, 413, 500, 854
SseBI	AGGCCT	2 cut(s)	339, 893
SsiI	CCGC	2 cut(s)	30, 846
SspMI	CTAG	1 cut(s)	246
StuI	AGGCCT	2 cut(s)	339, 893
StyD4I	CCNGG	1 cut(s)	367
TaaI	ACNGT	2 cut(s)	167, 821
TaiI	ACGT	1 cut(s)	334
TaqI	TCGA	3 cut(s)	312, 918, 924
TasI	AATT	7 cut(s)	16, 106, 257, 352, 413, 500, 854
TatI	WGTACW	1 cut(s)	579
TauI	GCSGC	2 cut(s)	33, 849
TfiI	GAWTC	4 cut(s)	89, 200, 463, 481
Tru1I	TTAA	5 cut(s)	227, 443, 531, 858, 888
Tru9I	TTAA	5 cut(s)	227, 443, 531, 858, 888
TseFI	GTSAC	3 cut(s)	152, 284, 777
TseI	GCWGC	3 cut(s)	422, 425, 648
Tsp45I	GTSAC	3 cut(s)	152, 284, 777
TspDTI	ATGAA	5 cut(s)	46, 426, 745, 825, 960
Van91I	CCANNNNNTGG	1 cut(s)	374
VpaK11BI	GGWCC	2 cut(s)	590, 750
XapI	RAATTY	1 cut(s)	854
XceI	RCATGY	1 cut(s)	973
XspI	CTAG	1 cut(s)	246
Zsp2I	ATGCAT	1 cut(s)	558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.