Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0005990

Physical Location & Seq

Genomic Coordinates Reverse (-)

633429 .. 636406

Gene Structure 2978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g00750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGGCAGACCCTTATAACTCCTCCAATCTCGACAATAATGGATGGATCAACTTTATGCCACTCCACCCTCATGATTGCCCTTCATTGCTCTCTACTGCTACTTCTTATGCCAACTCATCCAGAAGTACCCCCCTCACTTTCAGTGTTTCTAATCCTCCACACACCTACTCTTCACATAACTTCCTCACTGATAAGAAATCCTCTAATATTCAAACACAGATGCCCTTGTCCATTAATGATCATATCAACGTTTCCTCACCTCCTCTCAAAGAAGCTCTTCCTTTACTAAACAACTTACTAAGCCCTAGAGGGGTCCTAGAAGAGAAACATGGTCATGAGCCCTCAAGCAGCAGCACTATTACTCCAATAGAAGAAGAAACGAGGAACAAAGATCATGCTGTTTATGATGATGGTGATGACAGCGGCGATGATGAGGATAACTTGATTGTAGCCCTACACATAGGCCTCCCAAGTTCTTCTAATTCTGGTAACGTGCAATCTCAGTTTGCAGATCAGGTTCATAATAAGGAAGGACTGATCAGTAGCAGTAATAGTGATGTTGTTTCATCGGGTAACCCTAGTGTGGCTGTGAACAGACTAAACAAGGGTGATCGTTACTGGATTCCTACCCCTTCCCAGATTCTCATTGGCCCAACTCAGTTCTCATGTTCTATTTGCTCCAAAACCTTCAACAGATACAATAACTTGCAGGTTATTTTATTTTATATTTTTTATACACATATGATGCATATGTGGGGGCATGGCTCTCAATACAGGAAAGGACCAGACTCGCTAAAGCGAACTCAACCCACAGCCATGCTAAGACTCCGTTGCTATTGTTGTGCACCAGGTTGTAAGCACAACATTGACAACCCTAGAGGTGCAAAGCCACTCAAGGACTTCAGAACTCTTCAGGTACATTACAAGAGAAAGCACGGCGTCCGATCCTTCATGTGCAAACGCTGTGGCAGGGCATTTGCTGTGAAAGGTGATTGGAGAACCCATGAGAAAAACTGTGGCAAGATTTGGTACTGCATTTGTGGGTCTGATTTTAAGCAAAAGAGGTCTCTCAAAGACCACATCAAGGCCTTAGGTCGTGGCCATGGATTGTTCGATATTGAGTGTTTCGAAGAAGAAGAAGAACCCGCATCCGAAATTGAACATGATGCCGAGGCTTCAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0008152 GO:0009058 GO:0009812 GO:0009813 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0140110 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2 zf-C2H2_4 zf-C2H2_6

Protein Analysis

395

Amino Acids

44.21

Weight (kDa)

7.29

Isoelectric Point (pI)

59.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_STOP2_3rd	PF23115	278 - 313	1.3e-14	STOP2-like, C2H2-type zinc finger
C2CH-3rd_BIRD-IDD	PF22995	317 - 340	1.3e-10	BIRD-IDD transcription factor, third C2HC zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34790
fragaria_vesca	FvH4_5g37050
malus_domestica	MD02G1313400.v1.1 MD07G1008700.v1.1
prunus_persica	Prupe.1G519400_v2.0.a1
pyrus_communis	pycom07g00750
rosa_chinensis	RchiOBHm_Chr1g0315831 RchiOBHm_Chr7g0243841
rosa_laevigata	RLG00000000829 RLG00000030730
rosa_multiflora	Rmu_sc0003888.1_g000005 Rmu_sc0011973.1_g000005 Rmu_ssc0000154.1_g000005
rosa_roxburghii	Rroxscaffold_3G00221730 Rroxscaffold_4G00331410
rosa_rugosa	Rorug01G0005800 Rorug01G0005900 Rorug07G0321800
rosa_samantha	Rh1AG016800 Rh1BG009300 Rh1DG009800 Rh7AG476400 Rh7BG447600 Rh7CG494600 Rh7DG461700
rosa_wichuraiana	Rw1G000990 Rw7G039760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	15
Acc36I	ACCTGC	1 cut(s)	700
AciI	CCGC	2 cut(s)	423, 1146
AclI	AACGTT	1 cut(s)	249
AclWI	GGATC	2 cut(s)	53, 939
AcoI	YGGCCR	1 cut(s)	1099
AcuI	CTGAAG	2 cut(s)	886, 896
AcyI	GRCGYC	1 cut(s)	939
AfaI	GTAC	3 cut(s)	127, 918, 1031
AfiI	CCNNNNNNNGG	3 cut(s)	310, 583, 1084
AgsI	TTSAA	4 cut(s)	212, 691, 1160, 1179
AjnI	CCWGG	1 cut(s)	847
AluBI	AGCT	1 cut(s)	275
AluI	AGCT	1 cut(s)	275
Alw21I	GWGCWC	1 cut(s)	847
Alw26I	GTCTC	1 cut(s)	1071
Alw44I	GTGCAC	1 cut(s)	843
AlwI	GGATC	2 cut(s)	53, 939
AoxI	GGCC	4 cut(s)	463, 649, 1086, 1099
ApaLI	GTGCAC	1 cut(s)	843
ApeKI	GCWGC	2 cut(s)	348, 351
AseI	ATTAAT	1 cut(s)	234
Asp700I	GAANNNNTTC	1 cut(s)	276
AspS9I	GGNCC	3 cut(s)	313, 650, 782
AsuHPI	GGTGA	4 cut(s)	249, 425, 620, 1001
AsuII	TTCGAA	1 cut(s)	1128
AvaII	GGWCC	2 cut(s)	313, 782
AxyI	CCTNAGG	1 cut(s)	1090
BaeGI	GKGCMC	1 cut(s)	847
BalI	TGGCCA	1 cut(s)	1101
BanII	GRGCYC	1 cut(s)	342
Bbv12I	GWGCWC	1 cut(s)	847
BbvI	GCAGC	2 cut(s)	360, 363
BccI	CCATC	2 cut(s)	36, 404
BceAI	ACGGC	1 cut(s)	952
BciT130I	CCWGG	1 cut(s)	849
BclI	TGATCA	2 cut(s)	238, 537
BcoDI	GTCTC	1 cut(s)	1071
BfaI	CTAG	4 cut(s)	306, 317, 579, 876
BfuAI	ACCTGC	1 cut(s)	700
BisI	GCNGC	3 cut(s)	349, 352, 424
BlsI	GCNGC	3 cut(s)	350, 353, 425
Bme1390I	CCNGG	1 cut(s)	849
Bme18I	GGWCC	2 cut(s)	313, 782
BmgT120I	GGNCC	3 cut(s)	313, 650, 782
BmiI	GGNNCC	1 cut(s)	314
BmrFI	CCNGG	1 cut(s)	849
BmsI	GCATC	4 cut(s)	210, 735, 1156, 1157
Bpu14I	TTCGAA	1 cut(s)	1128
BpuEI	CTTGAG	2 cut(s)	328, 878
BsaHI	GRCGYC	1 cut(s)	939
BsaI	GGTCTC	1 cut(s)	1071
BsaJI	CCNNGG	2 cut(s)	1102, 1170
BsaXI	ACNNNNNCTCC	2 cut(s)	346, 376
Bsc4I	CCNNNNNNNGG	3 cut(s)	310, 583, 1084
Bse1I	ACTGG	1 cut(s)	623
Bse21I	CCTNAGG	1 cut(s)	1090
Bse3DI	GCAATG	1 cut(s)	83
BseBI	CCWGG	1 cut(s)	849
BseDI	CCNNGG	2 cut(s)	1102, 1170
BseGI	GGATG	3 cut(s)	47, 116, 1148
BseLI	CCNNNNNNNGG	3 cut(s)	310, 583, 1084
BseMI	GCAATG	1 cut(s)	83
BseMII	CTCAG	2 cut(s)	515, 671
BseNI	ACTGG	1 cut(s)	623
BseRI	GAGGAG	2 cut(s)	10, 252
BseSI	GKGCMC	1 cut(s)	847
BseXI	GCAGC	2 cut(s)	360, 363
BshFI	GGCC	4 cut(s)	465, 651, 1088, 1101
BsiHKAI	GWGCWC	1 cut(s)	847
BslI	CCNNNNNNNGG	3 cut(s)	310, 583, 1084
BsmAI	GTCTC	1 cut(s)	1071
BsnI	GGCC	4 cut(s)	465, 651, 1088, 1101
Bso31I	GGTCTC	1 cut(s)	1071
Bsp119I	TTCGAA	1 cut(s)	1128
Bsp1286I	GDGCHC	2 cut(s)	342, 847
Bsp143I	GATC	7 cut(s)	45, 238, 391, 511, 537, 610, 944
Bsp19I	CCATGG	1 cut(s)	1102
BspACI	CCGC	2 cut(s)	423, 1146
BspANI	GGCC	4 cut(s)	465, 651, 1088, 1101
BspCNI	CTCAG	2 cut(s)	514, 670
BspHI	TCATGA	2 cut(s)	70, 334
BspLI	GGNNCC	1 cut(s)	314
BspMI	ACCTGC	1 cut(s)	700
BspPI	GGATC	2 cut(s)	53, 939
BspQI	GCTCTTC	1 cut(s)	282
BspT104I	TTCGAA	1 cut(s)	1128
BspTNI	GGTCTC	1 cut(s)	1071
BsrDI	GCAATG	1 cut(s)	83
BsrI	ACTGG	1 cut(s)	623
BssECI	CCNNGG	2 cut(s)	1102, 1170
BssMI	GATC	7 cut(s)	45, 238, 391, 511, 537, 610, 944
BssNI	GRCGYC	1 cut(s)	939
BssT1I	CCWWGG	1 cut(s)	1102
Bst2UI	CCWGG	1 cut(s)	849
Bst4CI	ACNGT	1 cut(s)	1016
Bst6I	CTCTTC	4 cut(s)	175, 282, 315, 915
BstACI	GRCGYC	1 cut(s)	939
BstBI	TTCGAA	1 cut(s)	1128
BstDEI	CTNAG	5 cut(s)	299, 501, 657, 821, 1090
BstDSI	CCRYGG	1 cut(s)	1102
BstEII	GGTNACC	1 cut(s)	572
BstF5I	GGATG	3 cut(s)	47, 116, 1148
BstKTI	GATC	7 cut(s)	48, 241, 394, 514, 540, 613, 947
BstMAI	GTCTC	1 cut(s)	1071
BstMBI	GATC	7 cut(s)	45, 238, 391, 511, 537, 610, 944
BstNI	CCWGG	1 cut(s)	849
BstPI	GGTNACC	1 cut(s)	572
BstSCI	CCNGG	1 cut(s)	847
BstSLI	GKGCMC	1 cut(s)	847
BstV1I	GCAGC	2 cut(s)	360, 363
Bsu36I	CCTNAGG	1 cut(s)	1090
BsuRI	GGCC	4 cut(s)	465, 651, 1088, 1101
BtgI	CCRYGG	1 cut(s)	1102
BtgZI	GCGATG	1 cut(s)	441
BtsCI	GGATG	3 cut(s)	47, 116, 1148
BtsIMutI	CAGTG	2 cut(s)	148, 186
BveI	ACCTGC	1 cut(s)	700
CciI	TCATGA	2 cut(s)	70, 334
Cfr13I	GGNCC	3 cut(s)	313, 650, 782
CseI	GACGC	1 cut(s)	928
CsiI	ACCWGGT	1 cut(s)	847
Csp6I	GTAC	3 cut(s)	126, 917, 1030
CspCI	CAANNNNNGTGG	2 cut(s)	946, 981
CviQI	GTAC	3 cut(s)	126, 917, 1030
DdeI	CTNAG	5 cut(s)	299, 501, 657, 821, 1090
DpnI	GATC	7 cut(s)	47, 240, 393, 513, 539, 612, 946
DpnII	GATC	7 cut(s)	45, 238, 391, 511, 537, 610, 944
EaeI	YGGCCR	1 cut(s)	1099
Eam1104I	CTCTTC	4 cut(s)	175, 282, 315, 915
EarI	CTCTTC	4 cut(s)	175, 282, 315, 915
Eco130I	CCWWGG	1 cut(s)	1102
Eco147I	AGGCCT	2 cut(s)	465, 1088
Eco24I	GRGCYC	1 cut(s)	342
Eco31I	GGTCTC	1 cut(s)	1071
Eco47I	GGWCC	2 cut(s)	313, 782
Eco57I	CTGAAG	2 cut(s)	886, 896
Eco81I	CCTNAGG	1 cut(s)	1090
Eco91I	GGTNACC	1 cut(s)	572
EcoO109I	RGGNCCY	1 cut(s)	313
EcoO65I	GGTNACC	1 cut(s)	572
EcoRII	CCWGG	1 cut(s)	847
EcoT14I	CCWWGG	1 cut(s)	1102
EcoT22I	ATGCAT	1 cut(s)	750
EcoT38I	GRGCYC	1 cut(s)	342
ErhI	CCWWGG	1 cut(s)	1102
FalI	AAGNNNNNCTT	2 cut(s)	261, 293
FauI	CCCGC	1 cut(s)	1153
FauNDI	CATATG	2 cut(s)	741, 750
FbaI	TGATCA	2 cut(s)	238, 537
Fnu4HI	GCNGC	3 cut(s)	349, 352, 424
FokI	GGATG	3 cut(s)	54, 103, 1135
FriOI	GRGCYC	1 cut(s)	342
Fsp4HI	GCNGC	3 cut(s)	349, 352, 424
FspBI	CTAG	4 cut(s)	306, 317, 579, 876
GluI	GCNGC	3 cut(s)	349, 352, 424
HaeIII	GGCC	4 cut(s)	465, 651, 1088, 1101
HgaI	GACGC	1 cut(s)	928
Hin1I	GRCGYC	1 cut(s)	939
HinfI	GANTC	4 cut(s)	622, 640, 788, 825
HphI	GGTGA	4 cut(s)	249, 425, 620, 1001
Hpy166II	GTNNAC	2 cut(s)	592, 845
Hpy188I	TCNGA	4 cut(s)	905, 944, 1048, 1153
Hpy188III	TCNNGA	5 cut(s)	29, 71, 120, 335, 1179
Hpy8I	GTNNAC	2 cut(s)	592, 845
HpyAV	CCTTC	5 cut(s)	90, 524, 642, 697, 958
HpyCH4III	ACNGT	1 cut(s)	1016
HpyCH4IV	ACGT	2 cut(s)	249, 492
HpyCH4V	TGCA	8 cut(s)	496, 509, 709, 748, 845, 884, 957, 1035
HpyF3I	CTNAG	5 cut(s)	299, 501, 657, 821, 1090
HpySE526I	ACGT	2 cut(s)	249, 492
Hsp92I	GRCGYC	1 cut(s)	939
Ksp22I	TGATCA	2 cut(s)	238, 537
Kzo9I	GATC	7 cut(s)	45, 238, 391, 511, 537, 610, 944
LguI	GCTCTTC	1 cut(s)	282
LmnI	GCTCC	1 cut(s)	683
Lsp1109I	GCAGC	2 cut(s)	360, 363
LweI	GCATC	4 cut(s)	210, 735, 1156, 1157
MabI	ACCWGGT	1 cut(s)	847
MaeI	CTAG	4 cut(s)	306, 317, 579, 876
MaeII	ACGT	2 cut(s)	249, 492
MaeIII	GTNAC	3 cut(s)	488, 572, 614
MalI	GATC	7 cut(s)	47, 240, 393, 513, 539, 612, 946
MboI	GATC	7 cut(s)	45, 238, 391, 511, 537, 610, 944
MhlI	GDGCHC	2 cut(s)	342, 847
MlsI	TGGCCA	1 cut(s)	1101
MluCI	AATT	2 cut(s)	481, 1155
MluNI	TGGCCA	1 cut(s)	1101
MlyI	GAGTC	2 cut(s)	782, 819
Mox20I	TGGCCA	1 cut(s)	1101
Mph1103I	ATGCAT	1 cut(s)	750
MroXI	GAANNNNTTC	1 cut(s)	276
MscI	TGGCCA	1 cut(s)	1101
MseI	TTAA	2 cut(s)	234, 1053
MslI	CAYNNNNRTG	3 cut(s)	69, 333, 815
Msp20I	TGGCCA	1 cut(s)	1101
MspA1I	CMGCKG	1 cut(s)	423
MspR9I	CCNGG	1 cut(s)	849
MvaI	CCWGG	1 cut(s)	849
NcoI	CCATGG	1 cut(s)	1102
NdeI	CATATG	2 cut(s)	741, 750
NdeII	GATC	7 cut(s)	45, 238, 391, 511, 537, 610, 944
NlaIV	GGNNCC	1 cut(s)	314
NsiI	ATGCAT	1 cut(s)	750
NspV	TTCGAA	1 cut(s)	1128
PagI	TCATGA	2 cut(s)	70, 334
PceI	AGGCCT	2 cut(s)	465, 1088
PciSI	GCTCTTC	1 cut(s)	282
PdmI	GAANNNNTTC	1 cut(s)	276
PfeI	GAWTC	2 cut(s)	622, 640
PkrI	GCNGC	3 cut(s)	350, 353, 425
PleI	GAGTC	2 cut(s)	782, 819
PpsI	GAGTC	2 cut(s)	782, 819
PpuMI	RGGWCCY	1 cut(s)	313
PshBI	ATTAAT	1 cut(s)	234
PsiI	TTATAA	1 cut(s)	15
Psp1406I	AACGTT	1 cut(s)	249
Psp5II	RGGWCCY	1 cut(s)	313
Psp6I	CCWGG	1 cut(s)	847
PspEI	GGTNACC	1 cut(s)	572
PspGI	CCWGG	1 cut(s)	847
PspN4I	GGNNCC	1 cut(s)	314
PspPI	GGNCC	3 cut(s)	313, 650, 782
PspPPI	RGGWCCY	1 cut(s)	313
RsaI	GTAC	3 cut(s)	127, 918, 1031
RsaNI	GTAC	3 cut(s)	126, 917, 1030
RseI	CAYNNNNRTG	3 cut(s)	69, 333, 815
SapI	GCTCTTC	1 cut(s)	282
SaqAI	TTAA	2 cut(s)	234, 1053
SatI	GCNGC	3 cut(s)	349, 352, 424
Sau3AI	GATC	7 cut(s)	45, 238, 391, 511, 537, 610, 944
Sau96I	GGNCC	3 cut(s)	313, 650, 782
SchI	GAGTC	2 cut(s)	782, 819
ScrFI	CCNGG	1 cut(s)	849
SduI	GDGCHC	2 cut(s)	342, 847
SexAI	ACCWGGT	1 cut(s)	847
SfaNI	GCATC	4 cut(s)	210, 735, 1156, 1157
SfuI	TTCGAA	1 cut(s)	1128
SinI	GGWCC	2 cut(s)	313, 782
SmiMI	CAYNNNNRTG	3 cut(s)	69, 333, 815
SmlI	CTYRAG	2 cut(s)	343, 893
SmoI	CTYRAG	2 cut(s)	343, 893
Sse9I	AATT	2 cut(s)	481, 1155
SseBI	AGGCCT	2 cut(s)	465, 1088
SsiI	CCGC	2 cut(s)	423, 1146
SspI	AATATT	1 cut(s)	208
SspMI	CTAG	4 cut(s)	306, 317, 579, 876
StuI	AGGCCT	2 cut(s)	465, 1088
StyD4I	CCNGG	1 cut(s)	847
StyI	CCWWGG	1 cut(s)	1102
TaaI	ACNGT	1 cut(s)	1016
TaiI	ACGT	2 cut(s)	252, 495
TaqI	TCGA	3 cut(s)	30, 1113, 1128
TasI	AATT	2 cut(s)	481, 1155
TauI	GCSGC	1 cut(s)	426
TfiI	GAWTC	2 cut(s)	622, 640
Tru1I	TTAA	2 cut(s)	234, 1053
Tru9I	TTAA	2 cut(s)	234, 1053
TscAI	CASTG	2 cut(s)	148, 193
TseI	GCWGC	2 cut(s)	348, 351
TspDTI	ATGAA	4 cut(s)	72, 509, 555, 940
TspGWI	ACGGA	1 cut(s)	818
TspRI	CASTG	2 cut(s)	148, 193
VneI	GTGCAC	1 cut(s)	843
VpaK11BI	GGWCC	2 cut(s)	313, 782
VspI	ATTAAT	1 cut(s)	234
XcmI	CCANNNNNNNNNTGG	1 cut(s)	644
XmnI	GAANNNNTTC	1 cut(s)	276
XspI	CTAG	4 cut(s)	306, 317, 579, 876
Zsp2I	ATGCAT	1 cut(s)	750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.