Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0005990

Physical Location & Seq

Genomic Coordinates Reverse (-)

809523 .. 812693

Gene Structure 3171 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1008700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGCAGACCCCTATAACTCCTCCAATCTCGACAATAATGGATGGATCAACTTTATGCCACTCCACCCTCACCATTTCCCTTCATTGCTCTCTACTGCTACTTCTTCTGCCAACTCAACCAGAAGTAGCCCCTTTAATTTCAGTATTTCTAATCCTCCACACACCTACTCTTCACATAACTTCTTCACTGATAAGAAATCCTCTAATATTCAAACACAGATGCCCTCGTCCATTAATGATCATATCAACGTTTCCTCACCTCCTCTCAAAGAAGCTCTTCCTTTACTAAACAACTTACTAAGCCCTAGAGGGGTCCTAGAAGAGAAACATGGTCATGAGCCCTCAAACAGCAGCACTATTACTCCAATGGAAGAAGAAACGAGGAACAAAGATCATGCTGTTTATGATGATGGTGATGACAGCGGCGATGATGAGGATAACTTGATTGTAGCCCTACACTTAGGCCTCCCAAGTTCTTCTAATTTTGGTAACGTGCAATCTCAGTTTGCAGATCAGGTTCATAATAAGGAAGGAGTGATCAGTAGCAGTAATAGTGATGTTGTTTCATCGGGTAACCCTAGTGTGGCTGTGGACAGACTAAACAAGGGTGATCGTTACTGGATTCCCACCCCTTCCCAGATTCTTATTGGCCCAACTCAGTTCTCATGTTCTATTTGCTCCAAAACCTTCAACAGATACAATAACTTGCAGATGCATATGTGGGGGCATGGCTCTCAATACAGGGAAGGACCAAACTCGCTAAAGAGAACTCAACCCACAGCCATGCTAAGACTCCGTTGCTATTGTTGTGCACCAGGTTGTAAGCACAACATTGACAACCCTAGAGGTGCAAAGCCACTCAAGGACTTCAGAACTCTTCAGGTACATTACAAGAGAAAGCACGGCGTCCGATCCTTCATGTGCAAACGCTGTGGCAAGGCTTTTTCTGTGAAAGGTGATTGGAGAACCCATGAGAAAAACTGTGGCAAGATTTGGTACTGCATTTGTGGGTCTGATTTTAAGCAAAAGAGGTCTCTCAAAGACCACATCAAGGCCTTCGGTCGTGGCCATGGATCGTTCGATATTGAGTGTTTCGAAGAAGAAGATGAACCCGCATCCGAAATTGAACATGATGCCGAGGCTTCAAGATGGTATACTTCGCAAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0008152 GO:0009058 GO:0009812 GO:0009813 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0140110 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2 zf-C2H2_4 zf-C2H2_6

Protein Analysis

390

Amino Acids

43.69

Weight (kDa)

7.04

Isoelectric Point (pI)

55.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_STOP2_3rd	PF23115	267 - 302	1.3e-14	STOP2-like, C2H2-type zinc finger
C2CH-3rd_BIRD-IDD	PF22995	306 - 329	1.1e-09	BIRD-IDD transcription factor, third C2HC zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34790
fragaria_vesca	FvH4_5g37050
malus_domestica	MD02G1313400.v1.1 MD07G1008700.v1.1
prunus_persica	Prupe.1G519400_v2.0.a1
pyrus_communis	pycom07g00750
rosa_chinensis	RchiOBHm_Chr1g0315831 RchiOBHm_Chr7g0243841
rosa_laevigata	RLG00000000829 RLG00000030730
rosa_multiflora	Rmu_sc0003888.1_g000005 Rmu_sc0011973.1_g000005 Rmu_ssc0000154.1_g000005
rosa_roxburghii	Rroxscaffold_3G00221730 Rroxscaffold_4G00331410
rosa_rugosa	Rorug01G0005800 Rorug01G0005900 Rorug07G0321800
rosa_samantha	Rh1AG016800 Rh1BG009300 Rh1DG009800 Rh7AG476400 Rh7BG447600 Rh7CG494600 Rh7DG461700
rosa_wichuraiana	Rw1G000990 Rw7G039760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1154
AciI	CCGC	2 cut(s)	423, 1113
AclI	AACGTT	1 cut(s)	249
AclWI	GGATC	3 cut(s)	53, 906, 1081
AcoI	YGGCCR	1 cut(s)	1066
AcuI	CTGAAG	2 cut(s)	853, 863
AcyI	GRCGYC	1 cut(s)	906
AfaI	GTAC	2 cut(s)	885, 998
AfiI	CCNNNNNNNGG	3 cut(s)	310, 583, 1051
AgsI	TTSAA	4 cut(s)	212, 691, 1127, 1146
AjnI	CCWGG	1 cut(s)	814
AluBI	AGCT	1 cut(s)	275
AluI	AGCT	1 cut(s)	275
Alw21I	GWGCWC	1 cut(s)	814
Alw26I	GTCTC	1 cut(s)	1038
Alw44I	GTGCAC	1 cut(s)	810
AlwI	GGATC	3 cut(s)	53, 906, 1081
AoxI	GGCC	4 cut(s)	463, 649, 1053, 1066
ApaLI	GTGCAC	1 cut(s)	810
ApeKI	GCWGC	1 cut(s)	351
AseI	ATTAAT	1 cut(s)	234
Asp700I	GAANNNNTTC	1 cut(s)	276
AspS9I	GGNCC	3 cut(s)	313, 650, 749
AsuHPI	GGTGA	5 cut(s)	62, 249, 425, 620, 968
AsuII	TTCGAA	1 cut(s)	1095
AvaII	GGWCC	2 cut(s)	313, 749
BaeGI	GKGCMC	1 cut(s)	814
BalI	TGGCCA	1 cut(s)	1068
BanII	GRGCYC	1 cut(s)	342
Bbv12I	GWGCWC	1 cut(s)	814
BbvI	GCAGC	1 cut(s)	363
BccI	CCATC	3 cut(s)	36, 404, 1143
BceAI	ACGGC	1 cut(s)	919
BciT130I	CCWGG	1 cut(s)	816
BclI	TGATCA	2 cut(s)	238, 537
BcoDI	GTCTC	1 cut(s)	1038
BfaI	CTAG	4 cut(s)	306, 317, 579, 843
BisI	GCNGC	2 cut(s)	352, 424
BlsI	GCNGC	2 cut(s)	353, 425
Bme1390I	CCNGG	1 cut(s)	816
Bme18I	GGWCC	2 cut(s)	313, 749
BmgT120I	GGNCC	3 cut(s)	313, 650, 749
BmiI	GGNNCC	1 cut(s)	314
BmrFI	CCNGG	1 cut(s)	816
BmsI	GCATC	4 cut(s)	210, 702, 1123, 1124
Bpu14I	TTCGAA	1 cut(s)	1095
BpuEI	CTTGAG	1 cut(s)	845
BsaHI	GRCGYC	1 cut(s)	906
BsaI	GGTCTC	1 cut(s)	1038
BsaJI	CCNNGG	2 cut(s)	1069, 1137
BsaXI	ACNNNNNCTCC	2 cut(s)	346, 376
Bsc4I	CCNNNNNNNGG	3 cut(s)	310, 583, 1051
Bse1I	ACTGG	1 cut(s)	623
Bse3DI	GCAATG	1 cut(s)	83
BseBI	CCWGG	1 cut(s)	816
BseDI	CCNNGG	2 cut(s)	1069, 1137
BseGI	GGATG	2 cut(s)	47, 1115
BseLI	CCNNNNNNNGG	3 cut(s)	310, 583, 1051
BseMI	GCAATG	1 cut(s)	83
BseMII	CTCAG	2 cut(s)	515, 671
BseNI	ACTGG	1 cut(s)	623
BseRI	GAGGAG	2 cut(s)	10, 252
BseSI	GKGCMC	1 cut(s)	814
BseXI	GCAGC	1 cut(s)	363
Bsh1285I	CGRYCG	1 cut(s)	1063
BshFI	GGCC	4 cut(s)	465, 651, 1055, 1068
BsiEI	CGRYCG	1 cut(s)	1063
BsiHKAI	GWGCWC	1 cut(s)	814
BslI	CCNNNNNNNGG	3 cut(s)	310, 583, 1051
BsmAI	GTCTC	1 cut(s)	1038
BsnI	GGCC	4 cut(s)	465, 651, 1055, 1068
Bso31I	GGTCTC	1 cut(s)	1038
Bsp119I	TTCGAA	1 cut(s)	1095
Bsp1286I	GDGCHC	2 cut(s)	342, 814
Bsp143I	GATC	8 cut(s)	45, 238, 391, 511, 537, 610, 911, 1073
Bsp19I	CCATGG	1 cut(s)	1069
BspACI	CCGC	2 cut(s)	423, 1113
BspANI	GGCC	4 cut(s)	465, 651, 1055, 1068
BspCNI	CTCAG	2 cut(s)	514, 670
BspHI	TCATGA	1 cut(s)	334
BspLI	GGNNCC	1 cut(s)	314
BspPI	GGATC	3 cut(s)	53, 906, 1081
BspQI	GCTCTTC	1 cut(s)	282
BspT104I	TTCGAA	1 cut(s)	1095
BspTNI	GGTCTC	1 cut(s)	1038
BsrDI	GCAATG	1 cut(s)	83
BsrI	ACTGG	1 cut(s)	623
BssECI	CCNNGG	2 cut(s)	1069, 1137
BssMI	GATC	8 cut(s)	45, 238, 391, 511, 537, 610, 911, 1073
BssNAI	GTATAC	1 cut(s)	1155
BssNI	GRCGYC	1 cut(s)	906
BssT1I	CCWWGG	1 cut(s)	1069
Bst1107I	GTATAC	1 cut(s)	1155
Bst2UI	CCWGG	1 cut(s)	816
Bst4CI	ACNGT	1 cut(s)	983
Bst6I	CTCTTC	4 cut(s)	175, 282, 315, 882
BstACI	GRCGYC	1 cut(s)	906
BstBI	TTCGAA	1 cut(s)	1095
BstDEI	CTNAG	5 cut(s)	299, 460, 501, 657, 788
BstDSI	CCRYGG	1 cut(s)	1069
BstEII	GGTNACC	1 cut(s)	572
BstF5I	GGATG	2 cut(s)	47, 1115
BstKTI	GATC	8 cut(s)	48, 241, 394, 514, 540, 613, 914, 1076
BstMAI	GTCTC	1 cut(s)	1038
BstMBI	GATC	8 cut(s)	45, 238, 391, 511, 537, 610, 911, 1073
BstMCI	CGRYCG	1 cut(s)	1063
BstNI	CCWGG	1 cut(s)	816
BstPI	GGTNACC	1 cut(s)	572
BstSCI	CCNGG	1 cut(s)	814
BstSLI	GKGCMC	1 cut(s)	814
BstV1I	GCAGC	1 cut(s)	363
BstZ17I	GTATAC	1 cut(s)	1155
BsuRI	GGCC	4 cut(s)	465, 651, 1055, 1068
BtgI	CCRYGG	1 cut(s)	1069
BtgZI	GCGATG	1 cut(s)	441
BtsCI	GGATG	2 cut(s)	47, 1115
BtsIMutI	CAGTG	1 cut(s)	186
CciI	TCATGA	1 cut(s)	334
Cfr13I	GGNCC	3 cut(s)	313, 650, 749
CseI	GACGC	1 cut(s)	895
CsiI	ACCWGGT	1 cut(s)	814
Csp6I	GTAC	2 cut(s)	884, 997
CspCI	CAANNNNNGTGG	2 cut(s)	913, 948
CviQI	GTAC	2 cut(s)	884, 997
DdeI	CTNAG	5 cut(s)	299, 460, 501, 657, 788
DpnI	GATC	8 cut(s)	47, 240, 393, 513, 539, 612, 913, 1075
DpnII	GATC	8 cut(s)	45, 238, 391, 511, 537, 610, 911, 1073
EaeI	YGGCCR	1 cut(s)	1066
Eam1104I	CTCTTC	4 cut(s)	175, 282, 315, 882
EarI	CTCTTC	4 cut(s)	175, 282, 315, 882
Eco130I	CCWWGG	1 cut(s)	1069
Eco147I	AGGCCT	2 cut(s)	465, 1055
Eco24I	GRGCYC	1 cut(s)	342
Eco31I	GGTCTC	1 cut(s)	1038
Eco47I	GGWCC	2 cut(s)	313, 749
Eco57I	CTGAAG	2 cut(s)	853, 863
Eco91I	GGTNACC	1 cut(s)	572
EcoO109I	RGGNCCY	1 cut(s)	313
EcoO65I	GGTNACC	1 cut(s)	572
EcoRII	CCWGG	1 cut(s)	814
EcoT14I	CCWWGG	1 cut(s)	1069
EcoT22I	ATGCAT	1 cut(s)	717
EcoT38I	GRGCYC	1 cut(s)	342
ErhI	CCWWGG	1 cut(s)	1069
FalI	AAGNNNNNCTT	2 cut(s)	261, 293
FauI	CCCGC	1 cut(s)	1120
FauNDI	CATATG	1 cut(s)	717
FbaI	TGATCA	2 cut(s)	238, 537
FblI	GTMKAC	1 cut(s)	1154
Fnu4HI	GCNGC	2 cut(s)	352, 424
FokI	GGATG	2 cut(s)	54, 1102
FriOI	GRGCYC	1 cut(s)	342
Fsp4HI	GCNGC	2 cut(s)	352, 424
FspBI	CTAG	4 cut(s)	306, 317, 579, 843
GluI	GCNGC	2 cut(s)	352, 424
HaeIII	GGCC	4 cut(s)	465, 651, 1055, 1068
HgaI	GACGC	1 cut(s)	895
Hin1I	GRCGYC	1 cut(s)	906
HinfI	GANTC	3 cut(s)	622, 640, 792
HphI	GGTGA	5 cut(s)	62, 249, 425, 620, 968
Hpy166II	GTNNAC	3 cut(s)	592, 812, 1155
Hpy188I	TCNGA	4 cut(s)	872, 911, 1015, 1120
Hpy188III	TCNNGA	3 cut(s)	29, 335, 1146
Hpy8I	GTNNAC	3 cut(s)	592, 812, 1155
HpyAV	CCTTC	7 cut(s)	90, 524, 642, 697, 740, 925, 1066
HpyCH4III	ACNGT	1 cut(s)	983
HpyCH4IV	ACGT	2 cut(s)	249, 492
HpyCH4V	TGCA	8 cut(s)	496, 509, 709, 715, 812, 851, 924, 1002
HpyF3I	CTNAG	5 cut(s)	299, 460, 501, 657, 788
HpySE526I	ACGT	2 cut(s)	249, 492
Hsp92I	GRCGYC	1 cut(s)	906
Ksp22I	TGATCA	2 cut(s)	238, 537
Kzo9I	GATC	8 cut(s)	45, 238, 391, 511, 537, 610, 911, 1073
LguI	GCTCTTC	1 cut(s)	282
LmnI	GCTCC	1 cut(s)	683
LpnPI	CCDG	8 cut(s)	133, 500, 604, 650, 727, 801, 828, 866
Lsp1109I	GCAGC	1 cut(s)	363
LweI	GCATC	4 cut(s)	210, 702, 1123, 1124
MabI	ACCWGGT	1 cut(s)	814
MaeI	CTAG	4 cut(s)	306, 317, 579, 843
MaeII	ACGT	2 cut(s)	249, 492
MaeIII	GTNAC	3 cut(s)	488, 572, 614
MalI	GATC	8 cut(s)	47, 240, 393, 513, 539, 612, 913, 1075
MboI	GATC	8 cut(s)	45, 238, 391, 511, 537, 610, 911, 1073
MhlI	GDGCHC	2 cut(s)	342, 814
MlsI	TGGCCA	1 cut(s)	1068
MluCI	AATT	3 cut(s)	136, 481, 1122
MluNI	TGGCCA	1 cut(s)	1068
MlyI	GAGTC	1 cut(s)	786
Mox20I	TGGCCA	1 cut(s)	1068
Mph1103I	ATGCAT	1 cut(s)	717
MroXI	GAANNNNTTC	1 cut(s)	276
MscI	TGGCCA	1 cut(s)	1068
MseI	TTAA	3 cut(s)	135, 234, 1020
MslI	CAYNNNNRTG	2 cut(s)	333, 782
Msp20I	TGGCCA	1 cut(s)	1068
MspA1I	CMGCKG	1 cut(s)	423
MspR9I	CCNGG	1 cut(s)	816
MvaI	CCWGG	1 cut(s)	816
NcoI	CCATGG	1 cut(s)	1069
NdeI	CATATG	1 cut(s)	717
NdeII	GATC	8 cut(s)	45, 238, 391, 511, 537, 610, 911, 1073
NlaIV	GGNNCC	1 cut(s)	314
NmeAIII	GCCGAG	1 cut(s)	1162
NsiI	ATGCAT	1 cut(s)	717
NspV	TTCGAA	1 cut(s)	1095
PagI	TCATGA	1 cut(s)	334
PceI	AGGCCT	2 cut(s)	465, 1055
PciSI	GCTCTTC	1 cut(s)	282
PdmI	GAANNNNTTC	1 cut(s)	276
PfeI	GAWTC	2 cut(s)	622, 640
PkrI	GCNGC	2 cut(s)	353, 425
PleI	GAGTC	1 cut(s)	786
PpsI	GAGTC	1 cut(s)	786
PpuMI	RGGWCCY	1 cut(s)	313
PshBI	ATTAAT	1 cut(s)	234
Psp1406I	AACGTT	1 cut(s)	249
Psp5II	RGGWCCY	1 cut(s)	313
Psp6I	CCWGG	1 cut(s)	814
PspEI	GGTNACC	1 cut(s)	572
PspGI	CCWGG	1 cut(s)	814
PspN4I	GGNNCC	1 cut(s)	314
PspPI	GGNCC	3 cut(s)	313, 650, 749
PspPPI	RGGWCCY	1 cut(s)	313
RsaI	GTAC	2 cut(s)	885, 998
RsaNI	GTAC	2 cut(s)	884, 997
RseI	CAYNNNNRTG	2 cut(s)	333, 782
SapI	GCTCTTC	1 cut(s)	282
SaqAI	TTAA	3 cut(s)	135, 234, 1020
SatI	GCNGC	2 cut(s)	352, 424
Sau3AI	GATC	8 cut(s)	45, 238, 391, 511, 537, 610, 911, 1073
Sau96I	GGNCC	3 cut(s)	313, 650, 749
SchI	GAGTC	1 cut(s)	786
ScrFI	CCNGG	1 cut(s)	816
SduI	GDGCHC	2 cut(s)	342, 814
SexAI	ACCWGGT	1 cut(s)	814
SfaNI	GCATC	4 cut(s)	210, 702, 1123, 1124
SfuI	TTCGAA	1 cut(s)	1095
SinI	GGWCC	2 cut(s)	313, 749
SmiMI	CAYNNNNRTG	2 cut(s)	333, 782
SmlI	CTYRAG	1 cut(s)	860
SmoI	CTYRAG	1 cut(s)	860
Sse9I	AATT	3 cut(s)	136, 481, 1122
SseBI	AGGCCT	2 cut(s)	465, 1055
SsiI	CCGC	2 cut(s)	423, 1113
SspI	AATATT	1 cut(s)	208
SspMI	CTAG	4 cut(s)	306, 317, 579, 843
StuI	AGGCCT	2 cut(s)	465, 1055
StyD4I	CCNGG	1 cut(s)	814
StyI	CCWWGG	1 cut(s)	1069
TaaI	ACNGT	1 cut(s)	983
TaiI	ACGT	2 cut(s)	252, 495
TaqI	TCGA	3 cut(s)	30, 1080, 1095
TaqII	GACCGA	1 cut(s)	1049
TasI	AATT	3 cut(s)	136, 481, 1122
TauI	GCSGC	1 cut(s)	426
TfiI	GAWTC	2 cut(s)	622, 640
Tru1I	TTAA	3 cut(s)	135, 234, 1020
Tru9I	TTAA	3 cut(s)	135, 234, 1020
TscAI	CASTG	1 cut(s)	193
TseI	GCWGC	1 cut(s)	351
TspDTI	ATGAA	5 cut(s)	72, 509, 555, 907, 1122
TspGWI	ACGGA	1 cut(s)	785
TspRI	CASTG	1 cut(s)	193
VneI	GTGCAC	1 cut(s)	810
VpaK11BI	GGWCC	2 cut(s)	313, 749
VspI	ATTAAT	1 cut(s)	234
XcmI	CCANNNNNNNNNTGG	1 cut(s)	644
XmiI	GTMKAC	1 cut(s)	1154
XmnI	GAANNNNTTC	1 cut(s)	276
XspI	CTAG	4 cut(s)	306, 317, 579, 843
Zsp2I	ATGCAT	1 cut(s)	717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.