Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0005990

Physical Location & Seq

Genomic Coordinates Forward (+)

36897727 .. 36900710

Gene Structure 2984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1313400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGCAGACCCCTATAACTCCTCCAATCTCTACAATAATGGATGGATCAACTTTATGCCTCTCCGCCCTCACCATTGCCCTTCATTGCTCTCTACTGCTACTTTTTTTGCCAACTCCTCTAGAGGTACCCCCATTAATTTGAATATATCCAATCCTCCACACTCTTACTCTTCACATAATTTATTCATTGACTACAAATCCTCTAATAGTCAAAGCCAGATGCCCTCATCCATTAATGACCATATTAATGTTTCCTCACCTCCTCTGAAAGAAGCTCTTCCTCTACTAAACAACTTATTAAGCCCTAGAGGGGTCCTAGAAGAGGAACGTGGTCATGAGCCCTCAAGCAGCAGTACGATTACTCCAATGGAAGTGGAAACCATGAACAAATATGATGCTGTTTATGATGACGGTGATGACGACGAGAACTTGAGTGTAGCCCTACACATAGGCCTCCCAAGTTCTTCTAATTCTGGTAATGTGCAATCTCAGTTTGCAGATCATGATCATATTACGGAAGGAGTGATCAGTAGTACTATTAGTCATGTCGTTTCATCAGGTAACCCTATTGTGGCCGTGGACAGACTAAACAAGGGTGGTAATTACTGGATTCCCACCCCTGCTCAGATTCTTAGTGGCCCAACTCAGTTCTCATGTTCTATTTGCTCCAAAACTTTCAACAGATACAATAACTTGCAGATGCATATGTGGGGGCATGGTTCTCAATACAGGAAAGGACCAGACTCTCTAAAGAGAACTCAACCCACAGCCATGCTAAGACTCCCTTGCTACTGCTGTGCACCAGGTTGCAAGCACAACATTGACAACCCTATAGGTGCAAAGCCACTCAAAGACTTCAGAACTCTTCAGGTACATTACAAGAGAAAGCACGGTGTCCGGTCCTTCATGTGCAAACGCTGTGGCAAGGCATTTTCTGTGAAAGGTGATTGGAGAACCCATGAGAAAAATTGTGGCAAGATTTGGTACTGCATTTGTGGCTCTGATTTTAAGCACAAGCGATCTCTCAAAGACCACATCAAGGCCTTTGGTCATGGCCATGGATCGTTCGATATTAAGTGTTTCGAAGAAAGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0008152 GO:0009058 GO:0009812 GO:0009813 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0140110 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2 zf-C2H2_4

Protein Analysis

366

Amino Acids

40.8

Weight (kDa)

8.8

Isoelectric Point (pI)

53.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_STOP2_3rd	PF23115	263 - 298	5e-14	STOP2-like, C2H2-type zinc finger
C2CH-3rd_BIRD-IDD	PF22995	302 - 325	1e-09	BIRD-IDD transcription factor, third C2HC zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34790
fragaria_vesca	FvH4_5g37050
malus_domestica	MD02G1313400.v1.1 MD07G1008700.v1.1
prunus_persica	Prupe.1G519400_v2.0.a1
pyrus_communis	pycom07g00750
rosa_chinensis	RchiOBHm_Chr1g0315831 RchiOBHm_Chr7g0243841
rosa_laevigata	RLG00000000829 RLG00000030730
rosa_multiflora	Rmu_sc0003888.1_g000005 Rmu_sc0011973.1_g000005 Rmu_ssc0000154.1_g000005
rosa_roxburghii	Rroxscaffold_3G00221730 Rroxscaffold_4G00331410
rosa_rugosa	Rorug01G0005800 Rorug01G0005900 Rorug07G0321800
rosa_samantha	Rh1AG016800 Rh1BG009300 Rh1DG009800 Rh7AG476400 Rh7BG447600 Rh7CG494600 Rh7DG461700
rosa_wichuraiana	Rw1G000990 Rw7G039760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	125
AccB1I	GGYRCC	1 cut(s)	125
AciI	CCGC	1 cut(s)	64
AclWI	GGATC	2 cut(s)	53, 1069
AcoI	YGGCCR	2 cut(s)	573, 1054
AcuI	CTGAAG	2 cut(s)	841, 851
AfaI	GTAC	5 cut(s)	127, 355, 535, 873, 986
AfiI	CCNNNNNNNGG	4 cut(s)	310, 322, 571, 1039
AgsI	TTSAA	2 cut(s)	142, 679
AjnI	CCWGG	1 cut(s)	802
AluBI	AGCT	1 cut(s)	275
AluI	AGCT	1 cut(s)	275
Alw21I	GWGCWC	1 cut(s)	802
Alw44I	GTGCAC	1 cut(s)	798
AlwI	GGATC	2 cut(s)	53, 1069
AoxI	GGCC	5 cut(s)	451, 573, 637, 1041, 1054
ApaLI	GTGCAC	1 cut(s)	798
ApeKI	GCWGC	1 cut(s)	348
AseI	ATTAAT	3 cut(s)	135, 234, 246
Asp700I	GAANNNNTTC	1 cut(s)	276
Asp718I	GGTACC	1 cut(s)	125
AspS9I	GGNCC	4 cut(s)	313, 638, 737, 900
AsuHPI	GGTGA	4 cut(s)	62, 249, 425, 956
AsuII	TTCGAA	1 cut(s)	1083
AvaII	GGWCC	3 cut(s)	313, 737, 900
BaeGI	GKGCMC	1 cut(s)	802
BalI	TGGCCA	1 cut(s)	1056
BanI	GGYRCC	1 cut(s)	125
BanII	GRGCYC	1 cut(s)	342
Bbv12I	GWGCWC	1 cut(s)	802
BbvI	GCAGC	1 cut(s)	360
BccI	CCATC	1 cut(s)	36
BceAI	ACGGC	1 cut(s)	560
BciT130I	CCWGG	1 cut(s)	804
BclI	TGATCA	2 cut(s)	505, 525
BfaI	CTAG	3 cut(s)	120, 306, 317
BfmI	CTRYAG	1 cut(s)	831
BisI	GCNGC	1 cut(s)	349
BlsI	GCNGC	1 cut(s)	350
BmcAI	AGTACT	1 cut(s)	535
Bme1390I	CCNGG	1 cut(s)	804
Bme18I	GGWCC	3 cut(s)	313, 737, 900
BmgT120I	GGNCC	4 cut(s)	313, 638, 737, 900
BmiI	GGNNCC	2 cut(s)	127, 314
BmrFI	CCNGG	1 cut(s)	804
BmsI	GCATC	3 cut(s)	210, 385, 690
Bpu14I	TTCGAA	1 cut(s)	1083
BpuEI	CTTGAG	2 cut(s)	328, 451
BsaBI	GATNNNNATC	1 cut(s)	504
BsaJI	CCNNGG	2 cut(s)	576, 1057
BsaWI	WCCGGW	1 cut(s)	897
BsaXI	ACNNNNNCTCC	2 cut(s)	346, 376
Bsc4I	CCNNNNNNNGG	4 cut(s)	310, 322, 571, 1039
Bse1I	ACTGG	1 cut(s)	611
Bse3DI	GCAATG	2 cut(s)	73, 83
Bse8I	GATNNNNATC	1 cut(s)	504
BseBI	CCWGG	1 cut(s)	804
BseDI	CCNNGG	2 cut(s)	576, 1057
BseGI	GGATG	2 cut(s)	47, 227
BseJI	GATNNNNATC	1 cut(s)	504
BseLI	CCNNNNNNNGG	4 cut(s)	310, 322, 571, 1039
BseMI	GCAATG	2 cut(s)	73, 83
BseMII	CTCAG	3 cut(s)	503, 638, 659
BseNI	ACTGG	1 cut(s)	611
BseRI	GAGGAG	3 cut(s)	10, 106, 252
BseSI	GKGCMC	1 cut(s)	802
BseXI	GCAGC	1 cut(s)	360
BshFI	GGCC	5 cut(s)	453, 575, 639, 1043, 1056
BshNI	GGYRCC	1 cut(s)	125
BsiHKAI	GWGCWC	1 cut(s)	802
BsiSI	CCGG	1 cut(s)	898
BslI	CCNNNNNNNGG	4 cut(s)	310, 322, 571, 1039
BsnI	GGCC	5 cut(s)	453, 575, 639, 1043, 1056
Bsp119I	TTCGAA	1 cut(s)	1083
Bsp1286I	GDGCHC	2 cut(s)	342, 802
Bsp143I	GATC	6 cut(s)	45, 499, 505, 525, 1019, 1061
Bsp19I	CCATGG	1 cut(s)	1057
BspACI	CCGC	1 cut(s)	64
BspANI	GGCC	5 cut(s)	453, 575, 639, 1043, 1056
BspCNI	CTCAG	3 cut(s)	502, 637, 658
BspHI	TCATGA	2 cut(s)	334, 502
BspLI	GGNNCC	2 cut(s)	127, 314
BspPI	GGATC	2 cut(s)	53, 1069
BspQI	GCTCTTC	1 cut(s)	282
BspT104I	TTCGAA	1 cut(s)	1083
BspT107I	GGYRCC	1 cut(s)	125
BsrDI	GCAATG	2 cut(s)	73, 83
BsrI	ACTGG	1 cut(s)	611
BssECI	CCNNGG	2 cut(s)	576, 1057
BssMI	GATC	6 cut(s)	45, 499, 505, 525, 1019, 1061
BssT1I	CCWWGG	1 cut(s)	1057
Bst2UI	CCWGG	1 cut(s)	804
Bst4CI	ACNGT	2 cut(s)	413, 893
Bst6I	CTCTTC	4 cut(s)	175, 282, 315, 870
BstBI	TTCGAA	1 cut(s)	1083
BstC8I	GCNNGC	1 cut(s)	812
BstDEI	CTNAG	5 cut(s)	489, 624, 632, 645, 776
BstDSI	CCRYGG	2 cut(s)	576, 1057
BstEII	GGTNACC	1 cut(s)	560
BstENI	CCTNNNNNAGG	1 cut(s)	320
BstF5I	GGATG	2 cut(s)	47, 227
BstKTI	GATC	6 cut(s)	48, 502, 508, 528, 1022, 1064
BstMBI	GATC	6 cut(s)	45, 499, 505, 525, 1019, 1061
BstMWI	GCNNNNNNNGC	1 cut(s)	996
BstNI	CCWGG	1 cut(s)	804
BstPI	GGTNACC	1 cut(s)	560
BstSCI	CCNGG	1 cut(s)	802
BstSFI	CTRYAG	1 cut(s)	831
BstSLI	GKGCMC	1 cut(s)	802
BstV1I	GCAGC	1 cut(s)	360
BsuRI	GGCC	5 cut(s)	453, 575, 639, 1043, 1056
BtgI	CCRYGG	2 cut(s)	576, 1057
BtsCI	GGATG	2 cut(s)	47, 227
Cac8I	GCNNGC	1 cut(s)	812
CciI	TCATGA	2 cut(s)	334, 502
Cfr13I	GGNCC	4 cut(s)	313, 638, 737, 900
CsiI	ACCWGGT	1 cut(s)	802
Csp6I	GTAC	5 cut(s)	126, 354, 534, 872, 985
CspCI	CAANNNNNGTGG	4 cut(s)	354, 389, 901, 936
CviQI	GTAC	5 cut(s)	126, 354, 534, 872, 985
DdeI	CTNAG	5 cut(s)	489, 624, 632, 645, 776
DpnI	GATC	6 cut(s)	47, 501, 507, 527, 1021, 1063
DpnII	GATC	6 cut(s)	45, 499, 505, 525, 1019, 1061
EaeI	YGGCCR	2 cut(s)	573, 1054
Eam1104I	CTCTTC	4 cut(s)	175, 282, 315, 870
EarI	CTCTTC	4 cut(s)	175, 282, 315, 870
EciI	GGCGGA	1 cut(s)	53
Eco130I	CCWWGG	1 cut(s)	1057
Eco147I	AGGCCT	2 cut(s)	453, 1043
Eco24I	GRGCYC	1 cut(s)	342
Eco47I	GGWCC	3 cut(s)	313, 737, 900
Eco57I	CTGAAG	2 cut(s)	841, 851
Eco91I	GGTNACC	1 cut(s)	560
EcoNI	CCTNNNNNAGG	1 cut(s)	320
EcoO109I	RGGNCCY	1 cut(s)	313
EcoO65I	GGTNACC	1 cut(s)	560
EcoRII	CCWGG	1 cut(s)	802
EcoT14I	CCWWGG	1 cut(s)	1057
EcoT22I	ATGCAT	1 cut(s)	705
EcoT38I	GRGCYC	1 cut(s)	342
ErhI	CCWWGG	1 cut(s)	1057
FalI	AAGNNNNNCTT	4 cut(s)	261, 293, 769, 801
FauNDI	CATATG	1 cut(s)	705
FbaI	TGATCA	2 cut(s)	505, 525
Fnu4HI	GCNGC	1 cut(s)	349
FokI	GGATG	2 cut(s)	54, 214
FriOI	GRGCYC	1 cut(s)	342
Fsp4HI	GCNGC	1 cut(s)	349
FspBI	CTAG	3 cut(s)	120, 306, 317
GluI	GCNGC	1 cut(s)	349
HaeIII	GGCC	5 cut(s)	453, 575, 639, 1043, 1056
HapII	CCGG	1 cut(s)	898
HinfI	GANTC	4 cut(s)	610, 628, 743, 780
HpaII	CCGG	1 cut(s)	898
HphI	GGTGA	4 cut(s)	62, 249, 425, 956
Hpy166II	GTNNAC	2 cut(s)	580, 800
Hpy188I	TCNGA	4 cut(s)	267, 627, 860, 1003
Hpy188III	TCNNGA	3 cut(s)	120, 335, 503
Hpy8I	GTNNAC	2 cut(s)	580, 800
Hpy99I	CGWCG	1 cut(s)	425
HpyAV	CCTTC	3 cut(s)	90, 512, 913
HpyCH4III	ACNGT	2 cut(s)	413, 893
HpyCH4IV	ACGT	1 cut(s)	328
HpyCH4V	TGCA	9 cut(s)	484, 497, 697, 703, 800, 810, 839, 912, 990
HpyF10VI	GCNNNNNNNGC	1 cut(s)	996
HpyF3I	CTNAG	5 cut(s)	489, 624, 632, 645, 776
HpySE526I	ACGT	1 cut(s)	328
KpnI	GGTACC	1 cut(s)	129
Ksp22I	TGATCA	2 cut(s)	505, 525
Kzo9I	GATC	6 cut(s)	45, 499, 505, 525, 1019, 1061
LguI	GCTCTTC	1 cut(s)	282
LmnI	GCTCC	1 cut(s)	671
Lsp1109I	GCAGC	1 cut(s)	360
LweI	GCATC	3 cut(s)	210, 385, 690
MabI	ACCWGGT	1 cut(s)	802
MaeI	CTAG	3 cut(s)	120, 306, 317
MaeII	ACGT	1 cut(s)	328
MaeIII	GTNAC	1 cut(s)	560
MalI	GATC	6 cut(s)	47, 501, 507, 527, 1021, 1063
MboI	GATC	6 cut(s)	45, 499, 505, 525, 1019, 1061
MboII	GAAGA	6 cut(s)	162, 269, 332, 456, 857, 1097
MhlI	GDGCHC	2 cut(s)	342, 802
MlsI	TGGCCA	1 cut(s)	1056
MluCI	AATT	5 cut(s)	136, 178, 469, 601, 967
MluNI	TGGCCA	1 cut(s)	1056
MlyI	GAGTC	2 cut(s)	737, 774
Mox20I	TGGCCA	1 cut(s)	1056
Mph1103I	ATGCAT	1 cut(s)	705
MroXI	GAANNNNTTC	1 cut(s)	276
MscI	TGGCCA	1 cut(s)	1056
MseI	TTAA	6 cut(s)	135, 234, 246, 299, 1008, 1074
MslI	CAYNNNNRTG	3 cut(s)	246, 770, 1056
Msp20I	TGGCCA	1 cut(s)	1056
MspI	CCGG	1 cut(s)	898
MspR9I	CCNGG	1 cut(s)	804
MvaI	CCWGG	1 cut(s)	804
MwoI	GCNNNNNNNGC	1 cut(s)	996
NcoI	CCATGG	1 cut(s)	1057
NdeI	CATATG	1 cut(s)	705
NdeII	GATC	6 cut(s)	45, 499, 505, 525, 1019, 1061
NlaIV	GGNNCC	2 cut(s)	127, 314
NsiI	ATGCAT	1 cut(s)	705
NspV	TTCGAA	1 cut(s)	1083
PagI	TCATGA	2 cut(s)	334, 502
PceI	AGGCCT	2 cut(s)	453, 1043
PciSI	GCTCTTC	1 cut(s)	282
PcsI	WCGNNNNNNNCGW	1 cut(s)	417
PdmI	GAANNNNTTC	1 cut(s)	276
PfeI	GAWTC	2 cut(s)	610, 628
PkrI	GCNGC	1 cut(s)	350
PleI	GAGTC	2 cut(s)	737, 774
PpsI	GAGTC	2 cut(s)	737, 774
PpuMI	RGGWCCY	1 cut(s)	313
PshBI	ATTAAT	3 cut(s)	135, 234, 246
Psp5II	RGGWCCY	1 cut(s)	313
Psp6I	CCWGG	1 cut(s)	802
PspEI	GGTNACC	1 cut(s)	560
PspGI	CCWGG	1 cut(s)	802
PspN4I	GGNNCC	2 cut(s)	127, 314
PspPI	GGNCC	4 cut(s)	313, 638, 737, 900
PspPPI	RGGWCCY	1 cut(s)	313
RsaI	GTAC	5 cut(s)	127, 355, 535, 873, 986
RsaNI	GTAC	5 cut(s)	126, 354, 534, 872, 985
RseI	CAYNNNNRTG	3 cut(s)	246, 770, 1056
SapI	GCTCTTC	1 cut(s)	282
SaqAI	TTAA	6 cut(s)	135, 234, 246, 299, 1008, 1074
SatI	GCNGC	1 cut(s)	349
Sau3AI	GATC	6 cut(s)	45, 499, 505, 525, 1019, 1061
Sau96I	GGNCC	4 cut(s)	313, 638, 737, 900
ScaI	AGTACT	1 cut(s)	535
SchI	GAGTC	2 cut(s)	737, 774
ScrFI	CCNGG	1 cut(s)	804
SduI	GDGCHC	2 cut(s)	342, 802
SetI	ASST	9 cut(s)	127, 262, 277, 331, 562, 808, 838, 873, 946
SexAI	ACCWGGT	1 cut(s)	802
SfaNI	GCATC	3 cut(s)	210, 385, 690
SfcI	CTRYAG	1 cut(s)	831
SfuI	TTCGAA	1 cut(s)	1083
SinI	GGWCC	3 cut(s)	313, 737, 900
SmiMI	CAYNNNNRTG	3 cut(s)	246, 770, 1056
SmlI	CTYRAG	2 cut(s)	343, 430
SmoI	CTYRAG	2 cut(s)	343, 430
Sse9I	AATT	5 cut(s)	136, 178, 469, 601, 967
SseBI	AGGCCT	2 cut(s)	453, 1043
SsiI	CCGC	1 cut(s)	64
SspMI	CTAG	3 cut(s)	120, 306, 317
StuI	AGGCCT	2 cut(s)	453, 1043
StyD4I	CCNGG	1 cut(s)	802
StyI	CCWWGG	1 cut(s)	1057
TaaI	ACNGT	2 cut(s)	413, 893
TaiI	ACGT	1 cut(s)	331
TaqI	TCGA	2 cut(s)	1068, 1083
TasI	AATT	5 cut(s)	136, 178, 469, 601, 967
TatI	WGTACW	1 cut(s)	533
TfiI	GAWTC	2 cut(s)	610, 628
Tru1I	TTAA	6 cut(s)	135, 234, 246, 299, 1008, 1074
Tru9I	TTAA	6 cut(s)	135, 234, 246, 299, 1008, 1074
TseI	GCWGC	1 cut(s)	348
TspDTI	ATGAA	5 cut(s)	72, 175, 398, 543, 895
TspGWI	ACGGA	1 cut(s)	530
VneI	GTGCAC	1 cut(s)	798
VpaK11BI	GGWCC	3 cut(s)	313, 737, 900
VspI	ATTAAT	3 cut(s)	135, 234, 246
XagI	CCTNNNNNAGG	1 cut(s)	320
XbaI	TCTAGA	1 cut(s)	119
XmnI	GAANNNNTTC	1 cut(s)	276
XspI	CTAG	3 cut(s)	120, 306, 317
ZrmI	AGTACT	1 cut(s)	535
Zsp2I	ATGCAT	1 cut(s)	705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.