Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005990

Physical Location & Seq

Genomic Coordinates Forward (+)

1209486 .. 1210489

Gene Structure 1004 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0005800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGACTAAGAGATTATTGTGGAATAGAACCCGTGAAATTATTTATAACCTCACTTCACATCTCACTGCCTCTTCTTCCATCCCTTTGAAGAGGAAACCCGTTATTCGTCGATTGGAGAGGCCAATTTCCCCTACTTCTCCTTCGGTCCGTGCAGGGGATGTTACTGCGACTGATGCTCCTTTGGAGCACGCGTTGGAGAAGGATCAGAGTCCCACGGTCGAACCTCCCATAGAGACTGTTGATTTGGATGGTTCTGCAGGTATGAAGATGGTTCAAGATGCTGGTTTGGCTTCTAAGAAACGAAATCGAACCAGTGTGGGTAACCTTTCCCCCAAGAAATTCAAAACTATATTGGGTGGAAAAATTCCAACCCTACAGGCTGATGCTTTGGGATTGATTGAAGATGACAATGATGTTGTTTTGCTAACTTTGAAGCAGAAGAAGACTGGTAGGCCTCTTGGCAGCAAGAATAAGATTCAGCGCACTAGTAAGAAGACTAAGGGTAGTCTTCTAAAGCTCACCTATCCTTCACCTAATGGATCTGCTTCCAGCCCTAGAGATAAGGGCAAAGGAAAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0008152 GO:0009058 GO:0009812 GO:0009813 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0140110 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2 zf-C2H2_4 zf-C2H2_6

Protein Analysis

193

Amino Acids

20.97

Weight (kDa)

10.31

Isoelectric Point (pI)

50.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34790
fragaria_vesca	FvH4_5g37050
malus_domestica	MD02G1313400.v1.1 MD07G1008700.v1.1
prunus_persica	Prupe.1G519400_v2.0.a1
pyrus_communis	pycom07g00750
rosa_chinensis	RchiOBHm_Chr1g0315831 RchiOBHm_Chr7g0243841
rosa_laevigata	RLG00000000829 RLG00000030730
rosa_multiflora	Rmu_sc0003888.1_g000005 Rmu_sc0011973.1_g000005 Rmu_ssc0000154.1_g000005
rosa_roxburghii	Rroxscaffold_3G00221730 Rroxscaffold_4G00331410
rosa_rugosa	Rorug01G0005800 Rorug01G0005900 Rorug07G0321800
rosa_samantha	Rh1AG016800 Rh1BG009300 Rh1DG009800 Rh7AG476400 Rh7BG447600 Rh7CG494600 Rh7DG461700
rosa_wichuraiana	Rw1G000990 Rw7G039760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	45
Acc36I	ACCTGC	1 cut(s)	248
AccII	CGCG	1 cut(s)	191
AclWI	GGATC	2 cut(s)	210, 547
AcsI	RAATTY	2 cut(s)	338, 363
AfiI	CCNNNNNNNGG	1 cut(s)	154
AflIII	ACRYGT	1 cut(s)	189
AgsI	TTSAA	5 cut(s)	88, 275, 343, 401, 433
AhlI	ACTAGT	1 cut(s)	485
AluBI	AGCT	1 cut(s)	517
AluI	AGCT	1 cut(s)	517
Alw21I	GWGCWC	1 cut(s)	189
Alw26I	GTCTC	1 cut(s)	227
AlwI	GGATC	2 cut(s)	210, 547
AoxI	GGCC	2 cut(s)	119, 452
ApeKI	GCWGC	1 cut(s)	462
ApoI	RAATTY	2 cut(s)	338, 363
ArsI	GACNNNNNNTTYG	2 cut(s)	226, 258
AspLEI	GCGC	1 cut(s)	483
AspS9I	GGNCC	1 cut(s)	145
AsuHPI	GGTGA	2 cut(s)	511, 522
AvaII	GGWCC	1 cut(s)	145
BbsI	GAAGAC	3 cut(s)	449, 500, 500
Bbv12I	GWGCWC	1 cut(s)	189
BbvI	GCAGC	1 cut(s)	474
BccI	CCATC	3 cut(s)	86, 242, 262
BcoDI	GTCTC	1 cut(s)	227
BcuI	ACTAGT	1 cut(s)	485
BfaI	CTAG	2 cut(s)	486, 555
BfmI	CTRYAG	2 cut(s)	255, 374
BfuAI	ACCTGC	1 cut(s)	248
BisI	GCNGC	1 cut(s)	463
BlsI	GCNGC	1 cut(s)	464
Bme18I	GGWCC	1 cut(s)	145
BmgT120I	GGNCC	1 cut(s)	145
BmsI	GCATC	3 cut(s)	163, 268, 373
BpiI	GAAGAC	3 cut(s)	449, 500, 500
BsaJI	CCNNGG	1 cut(s)	213
BsaXI	ACNNNNNCTCC	4 cut(s)	160, 176, 190, 206
Bsc4I	CCNNNNNNNGG	1 cut(s)	154
Bse1I	ACTGG	2 cut(s)	312, 451
BseDI	CCNNGG	1 cut(s)	213
BseGI	GGATG	3 cut(s)	78, 163, 253
BseLI	CCNNNNNNNGG	1 cut(s)	154
BseNI	ACTGG	2 cut(s)	312, 451
BseXI	GCAGC	1 cut(s)	474
BsgI	GTGCAG	1 cut(s)	171
Bsh1236I	CGCG	1 cut(s)	191
Bsh1285I	CGRYCG	1 cut(s)	219
BshFI	GGCC	2 cut(s)	121, 454
BsiEI	CGRYCG	1 cut(s)	219
BsiHKAI	GWGCWC	1 cut(s)	189
BslFI	GGGAC	1 cut(s)	195
BslI	CCNNNNNNNGG	1 cut(s)	154
BsmAI	GTCTC	1 cut(s)	227
BsmFI	GGGAC	1 cut(s)	195
BsnI	GGCC	2 cut(s)	121, 454
Bsp1286I	GDGCHC	1 cut(s)	189
Bsp143I	GATC	2 cut(s)	202, 539
BspANI	GGCC	2 cut(s)	121, 454
BspFNI	CGCG	1 cut(s)	191
BspMAI	CTGCAG	1 cut(s)	259
BspMI	ACCTGC	1 cut(s)	248
BspPI	GGATC	2 cut(s)	210, 547
BsrI	ACTGG	2 cut(s)	312, 451
BssECI	CCNNGG	1 cut(s)	213
BssMI	GATC	2 cut(s)	202, 539
Bst4CI	ACNGT	2 cut(s)	217, 238
Bst6I	CTCTTC	2 cut(s)	76, 83
BstC8I	GCNNGC	1 cut(s)	189
BstDEI	CTNAG	3 cut(s)	6, 294, 498
BstDSI	CCRYGG	1 cut(s)	213
BstEII	GGTNACC	1 cut(s)	320
BstF5I	GGATG	3 cut(s)	78, 163, 253
BstFNI	CGCG	1 cut(s)	191
BstHHI	GCGC	1 cut(s)	483
BstKTI	GATC	2 cut(s)	205, 542
BstMAI	GTCTC	1 cut(s)	227
BstMBI	GATC	2 cut(s)	202, 539
BstMCI	CGRYCG	1 cut(s)	219
BstMWI	GCNNNNNNNGC	2 cut(s)	173, 287
BstPI	GGTNACC	1 cut(s)	320
BstSFI	CTRYAG	2 cut(s)	255, 374
BstUI	CGCG	1 cut(s)	191
BstV1I	GCAGC	1 cut(s)	474
BstV2I	GAAGAC	3 cut(s)	449, 500, 500
BstX2I	RGATCY	1 cut(s)	539
BstYI	RGATCY	1 cut(s)	539
BsuRI	GGCC	2 cut(s)	121, 454
BtgI	CCRYGG	1 cut(s)	213
BtsCI	GGATG	3 cut(s)	78, 163, 253
BtsI	GCAGTG	1 cut(s)	63
BtsIMutI	CAGTG	2 cut(s)	63, 319
BveI	ACCTGC	1 cut(s)	248
Cac8I	GCNNGC	1 cut(s)	189
CfoI	GCGC	1 cut(s)	483
Cfr13I	GGNCC	1 cut(s)	145
CpoI	CGGWCCG	1 cut(s)	145
CspI	CGGWCCG	1 cut(s)	145
CviJI	RGCY	6 cut(s)	121, 290, 380, 454, 517, 552
CviKI_1	RGCY	6 cut(s)	121, 290, 380, 454, 517, 552
DdeI	CTNAG	3 cut(s)	6, 294, 498
DpnI	GATC	2 cut(s)	204, 541
DpnII	GATC	2 cut(s)	202, 539
Eam1104I	CTCTTC	2 cut(s)	76, 83
EarI	CTCTTC	2 cut(s)	76, 83
Eco147I	AGGCCT	1 cut(s)	454
Eco47I	GGWCC	1 cut(s)	145
Eco91I	GGTNACC	1 cut(s)	320
EcoO65I	GGTNACC	1 cut(s)	320
FaiI	YATR	4 cut(s)	45, 230, 263, 350
FalI	AAGNNNNNCTT	1 cut(s)	561
FaqI	GGGAC	1 cut(s)	195
Fnu4HI	GCNGC	1 cut(s)	463
FokI	GGATG	3 cut(s)	65, 170, 260
Fsp4HI	GCNGC	1 cut(s)	463
FspBI	CTAG	2 cut(s)	486, 555
GlaI	GCGC	1 cut(s)	482
GluI	GCNGC	1 cut(s)	463
HaeIII	GGCC	2 cut(s)	121, 454
HhaI	GCGC	1 cut(s)	483
Hin6I	GCGC	1 cut(s)	481
HinP1I	GCGC	1 cut(s)	481
HinfI	GANTC	2 cut(s)	208, 475
HphI	GGTGA	2 cut(s)	511, 522
Hpy188I	TCNGA	1 cut(s)	207
Hpy188III	TCNNGA	1 cut(s)	275
Hpy99I	CGWCG	1 cut(s)	111
HpyAV	CCTTC	3 cut(s)	150, 193, 537
HpyCH4III	ACNGT	2 cut(s)	217, 238
HpyCH4V	TGCA	2 cut(s)	152, 257
HpyF10VI	GCNNNNNNNGC	2 cut(s)	173, 287
HpyF3I	CTNAG	3 cut(s)	6, 294, 498
HspAI	GCGC	1 cut(s)	481
Kzo9I	GATC	2 cut(s)	202, 539
LmnI	GCTCC	2 cut(s)	181, 184
LpnPI	CCDG	7 cut(s)	138, 243, 267, 325, 362, 432, 562
Lsp1109I	GCAGC	1 cut(s)	474
LweI	GCATC	3 cut(s)	163, 268, 373
MaeI	CTAG	2 cut(s)	486, 555
MaeIII	GTNAC	2 cut(s)	160, 320
MalI	GATC	2 cut(s)	204, 541
MboI	GATC	2 cut(s)	202, 539
MboII	GAAGA	9 cut(s)	63, 66, 100, 277, 413, 451, 454, 500, 505
MflI	RGATCY	1 cut(s)	539
MhlI	GDGCHC	1 cut(s)	189
MluCI	AATT	4 cut(s)	36, 123, 338, 363
MluI	ACGCGT	1 cut(s)	189
MlyI	GAGTC	1 cut(s)	217
MmeI	TCCRAC	2 cut(s)	174, 392
MnlI	CCTC	6 cut(s)	59, 79, 84, 111, 234, 465
MvnI	CGCG	1 cut(s)	191
MwoI	GCNNNNNNNGC	2 cut(s)	173, 287
NdeII	GATC	2 cut(s)	202, 539
PceI	AGGCCT	1 cut(s)	454
PfeI	GAWTC	1 cut(s)	475
PkrI	GCNGC	1 cut(s)	464
PleI	GAGTC	1 cut(s)	216
PpsI	GAGTC	1 cut(s)	216
PsiI	TTATAA	1 cut(s)	45
PspEI	GGTNACC	1 cut(s)	320
PspPI	GGNCC	1 cut(s)	145
PstI	CTGCAG	1 cut(s)	259
PsuI	RGATCY	1 cut(s)	539
Rsr2I	CGGWCCG	1 cut(s)	145
RsrII	CGGWCCG	1 cut(s)	145
SatI	GCNGC	1 cut(s)	463
Sau3AI	GATC	2 cut(s)	202, 539
Sau96I	GGNCC	1 cut(s)	145
SchI	GAGTC	1 cut(s)	217
SduI	GDGCHC	1 cut(s)	189
SetI	ASST	7 cut(s)	51, 226, 262, 327, 519, 524, 535
SfaNI	GCATC	3 cut(s)	163, 268, 373
SfcI	CTRYAG	2 cut(s)	255, 374
SinI	GGWCC	1 cut(s)	145
SpeI	ACTAGT	1 cut(s)	485
Sse9I	AATT	4 cut(s)	36, 123, 338, 363
SseBI	AGGCCT	1 cut(s)	454
SspMI	CTAG	2 cut(s)	486, 555
StuI	AGGCCT	1 cut(s)	454
TaaI	ACNGT	2 cut(s)	217, 238
TaqI	TCGA	3 cut(s)	109, 219, 307
TaqII	GACCGA	1 cut(s)	133
TasI	AATT	4 cut(s)	36, 123, 338, 363
TfiI	GAWTC	1 cut(s)	475
TscAI	CASTG	2 cut(s)	70, 319
TseI	GCWGC	1 cut(s)	462
TspDTI	ATGAA	1 cut(s)	278
TspGWI	ACGGA	1 cut(s)	137
TspRI	CASTG	2 cut(s)	70, 319
VpaK11BI	GGWCC	1 cut(s)	145
XapI	RAATTY	2 cut(s)	338, 363
XspI	CTAG	2 cut(s)	486, 555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.