Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005990

Physical Location & Seq

Genomic Coordinates Reverse (-)

70132818 .. 70134014

Gene Structure 1197 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21855

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGAGCCGTCTGAAATTTCATCTAGATTTGCTAGGACCCTCAATCTTTTTCCAAATGAGAAGGACCCGAACCAAGTACCCAATTCCCATGATTTAGGTTTTTCATCATCTGAAAACCCTAAATTCTGCAGTGAAGATCATAATAAAGAGGATGAAGTTACTATAGCCTTACACATTGGCCTTCCTGAATACTCAGACGGCTCTGTGAATTCGACTGAGAAGGAAGTATCGGATCACGAAAATGTGACTGCAGAACAAAAGTTCTGGATTCCAACTCGGGAACAGATACTGATTGGCTTCACTCATTTTTCTTGCCATGTCTGCTTCAAAACATTTAACCGCTACAATAATCTGCAGGTACAATCAAAGATTGTTTGCATTATACTAGGTCAAAATATTCTTAGATCATATGGAAATTTTCTTTTGTCAGATTGTTTGATGCACATGTGGGGGCATGGATCCCAGTATCGAAGAGGACCGGAGTCACTGAAGGGAACACAACCTCGAGCAATGTTGGGCCTCCCATGCTATTGTTGTGCAGAAGGCTGCAAAAACAACATAGACTACCCAAGAGCAAAACCCTTGAAAGACTTTCGAACACTTCAAACTCACTACAAGAGAAAGCATGGCGTGAAACCCTTCATGTGTCGAAAGTGTGGCAAGTTGCTGGCAGTGAAAGGTGACTGGAGAACTCATGAGAAGAATTGTGGCAAGCGCTGGCTTTGCACTTGTGGTTCAGATTTCAAGCACAAGAGGTCATTGAAAGATCATATGAAGGCTTTTGGGTCTGGTCATAGTCCTTTCCCTCCTACTTCTTTTGATGAGGATAGTACTGCAGCTTCCTTTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0008152 GO:0009058 GO:0009812 GO:0009813 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0140110 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2

Protein Analysis

283

Amino Acids

32.29

Weight (kDa)

8.69

Isoelectric Point (pI)

53.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_STOP2_3rd	PF23115	176 - 210	3.6e-19	STOP2-like, C2H2-type zinc finger
C2CH-3rd_BIRD-IDD	PF22995	213 - 237	1.1e-10	BIRD-IDD transcription factor, third C2HC zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34790
fragaria_vesca	FvH4_5g37050
malus_domestica	MD02G1313400.v1.1 MD07G1008700.v1.1
prunus_persica	Prupe.1G519400_v2.0.a1
pyrus_communis	pycom07g00750
rosa_chinensis	RchiOBHm_Chr1g0315831 RchiOBHm_Chr7g0243841
rosa_laevigata	RLG00000000829 RLG00000030730
rosa_multiflora	Rmu_sc0003888.1_g000005 Rmu_sc0011973.1_g000005 Rmu_ssc0000154.1_g000005
rosa_roxburghii	Rroxscaffold_3G00221730 Rroxscaffold_4G00331410
rosa_rugosa	Rorug01G0005800 Rorug01G0005900 Rorug07G0321800
rosa_samantha	Rh1AG016800 Rh1BG009300 Rh1DG009800 Rh7AG476400 Rh7BG447600 Rh7CG494600 Rh7DG461700
rosa_wichuraiana	Rw1G000990 Rw7G039760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	346
AciI	CCGC	1 cut(s)	340
AclWI	GGATC	3 cut(s)	240, 453, 466
AcsI	RAATTY	4 cut(s)	15, 122, 208, 415
AcuI	CTGAAG	1 cut(s)	509
AfaI	GTAC	3 cut(s)	78, 360, 832
AfeI	AGCGCT	1 cut(s)	716
AflIII	ACRYGT	1 cut(s)	444
AgsI	TTSAA	5 cut(s)	328, 586, 605, 745, 763
AluBI	AGCT	1 cut(s)	839
AluI	AGCT	1 cut(s)	839
AlwI	GGATC	3 cut(s)	240, 453, 466
AlwNI	CAGNNNCTG	1 cut(s)	289
Ama87I	CYCGRG	2 cut(s)	276, 504
Aor51HI	AGCGCT	1 cut(s)	716
AoxI	GGCC	2 cut(s)	178, 517
ApeKI	GCWGC	2 cut(s)	546, 836
ApoI	RAATTY	4 cut(s)	15, 122, 208, 415
Asp700I	GAANNNNTTC	1 cut(s)	638
AspLEI	GCGC	1 cut(s)	717
AspS9I	GGNCC	4 cut(s)	36, 64, 476, 517
AsuHPI	GGTGA	1 cut(s)	692
AsuII	TTCGAA	1 cut(s)	595
AvaI	CYCGRG	2 cut(s)	276, 504
AvaII	GGWCC	3 cut(s)	36, 64, 476
BamHI	GGATCC	1 cut(s)	458
BarI	GAAGNNNNNNTAC	1 cut(s)	823
BbvI	GCAGC	2 cut(s)	533, 848
BceAI	ACGGC	1 cut(s)	214
BfaI	CTAG	3 cut(s)	24, 33, 386
BfmI	CTRYAG	5 cut(s)	127, 162, 249, 353, 834
BfoI	RGCGCY	1 cut(s)	718
BfuAI	ACCTGC	1 cut(s)	346
BisI	GCNGC	2 cut(s)	547, 837
BlsI	GCNGC	2 cut(s)	548, 838
BmcAI	AGTACT	1 cut(s)	832
Bme18I	GGWCC	3 cut(s)	36, 64, 476
BmeT110I	CYCGRG	2 cut(s)	276, 504
BmgT120I	GGNCC	4 cut(s)	36, 64, 476, 517
BmiI	GGNNCC	4 cut(s)	6, 38, 66, 460
BmrI	ACTGGG	1 cut(s)	457
BmsI	GCATC	1 cut(s)	429
BmuI	ACTGGG	1 cut(s)	457
BoxI	GACNNNNGTC	1 cut(s)	481
BpmI	CTGGAG	1 cut(s)	706
Bpu14I	TTCGAA	1 cut(s)	595
BsaWI	WCCGGW	1 cut(s)	478
Bse1I	ACTGG	2 cut(s)	463, 689
Bse3DI	GCAATG	1 cut(s)	516
BseGI	GGATG	1 cut(s)	157
BseMI	GCAATG	1 cut(s)	516
BseMII	CTCAG	2 cut(s)	207, 207
BseNI	ACTGG	2 cut(s)	463, 689
BseXI	GCAGC	2 cut(s)	533, 848
BsgI	GTGCAG	1 cut(s)	558
BshFI	GGCC	2 cut(s)	180, 519
BsiHKCI	CYCGRG	2 cut(s)	276, 504
BsiSI	CCGG	1 cut(s)	479
BsnI	GGCC	2 cut(s)	180, 519
BsoBI	CYCGRG	2 cut(s)	276, 504
Bsp119I	TTCGAA	1 cut(s)	595
Bsp143I	GATC	5 cut(s)	136, 232, 404, 458, 766
BspACI	CCGC	1 cut(s)	340
BspANI	GGCC	2 cut(s)	180, 519
BspCNI	CTCAG	2 cut(s)	206, 208
BspHI	TCATGA	1 cut(s)	694
BspLI	GGNNCC	4 cut(s)	6, 38, 66, 460
BspMAI	CTGCAG	4 cut(s)	131, 253, 357, 838
BspMI	ACCTGC	1 cut(s)	346
BspPI	GGATC	3 cut(s)	240, 453, 466
BspT104I	TTCGAA	1 cut(s)	595
BsrDI	GCAATG	1 cut(s)	516
BsrI	ACTGG	2 cut(s)	463, 689
BssMI	GATC	5 cut(s)	136, 232, 404, 458, 766
Bst6I	CTCTTC	1 cut(s)	466
BstBI	TTCGAA	1 cut(s)	595
BstC8I	GCNNGC	3 cut(s)	669, 713, 719
BstDEI	CTNAG	3 cut(s)	193, 216, 401
BstF5I	GGATG	1 cut(s)	157
BstH2I	RGCGCY	1 cut(s)	718
BstHHI	GCGC	1 cut(s)	717
BstKTI	GATC	5 cut(s)	139, 235, 407, 461, 769
BstMBI	GATC	5 cut(s)	136, 232, 404, 458, 766
BstMWI	GCNNNNNNNGC	3 cut(s)	321, 525, 723
BstNSI	RCATGY	1 cut(s)	448
BstPAI	GACNNNNGTC	1 cut(s)	481
BstSFI	CTRYAG	5 cut(s)	127, 162, 249, 353, 834
BstV1I	GCAGC	2 cut(s)	533, 848
BstX2I	RGATCY	1 cut(s)	458
BstYI	RGATCY	1 cut(s)	458
BsuRI	GGCC	2 cut(s)	180, 519
BtsCI	GGATG	1 cut(s)	157
BtsI	GCAGTG	2 cut(s)	136, 678
BtsIMutI	CAGTG	3 cut(s)	136, 485, 678
BveI	ACCTGC	1 cut(s)	346
Cac8I	GCNNGC	3 cut(s)	669, 713, 719
CaiI	CAGNNNCTG	1 cut(s)	289
CciI	TCATGA	1 cut(s)	694
CfoI	GCGC	1 cut(s)	717
Cfr13I	GGNCC	4 cut(s)	36, 64, 476, 517
Csp6I	GTAC	3 cut(s)	77, 359, 831
CviAII	CATG	8 cut(s)	89, 317, 445, 455, 525, 626, 643, 695
CviQI	GTAC	3 cut(s)	77, 359, 831
DdeI	CTNAG	3 cut(s)	193, 216, 401
DpnI	GATC	5 cut(s)	138, 234, 406, 460, 768
DpnII	GATC	5 cut(s)	136, 232, 404, 458, 766
Eam1104I	CTCTTC	1 cut(s)	466
EarI	CTCTTC	1 cut(s)	466
Eco47I	GGWCC	3 cut(s)	36, 64, 476
Eco47III	AGCGCT	1 cut(s)	716
Eco57I	CTGAAG	1 cut(s)	509
Eco88I	CYCGRG	2 cut(s)	276, 504
EcoO109I	RGGNCCY	2 cut(s)	36, 64
EcoRI	GAATTC	1 cut(s)	208
FaeI	CATG	8 cut(s)	92, 320, 448, 458, 528, 629, 646, 698
FatI	CATG	8 cut(s)	88, 316, 444, 454, 524, 625, 642, 694
FauNDI	CATATG	2 cut(s)	409, 771
Fnu4HI	GCNGC	2 cut(s)	547, 837
FokI	GGATG	1 cut(s)	164
Fsp4HI	GCNGC	2 cut(s)	547, 837
FspBI	CTAG	3 cut(s)	24, 33, 386
GlaI	GCGC	1 cut(s)	716
GluI	GCNGC	2 cut(s)	547, 837
GsuI	CTGGAG	1 cut(s)	706
HaeII	RGCGCY	1 cut(s)	718
HaeIII	GGCC	2 cut(s)	180, 519
HapII	CCGG	1 cut(s)	479
HhaI	GCGC	1 cut(s)	717
Hin1II	CATG	8 cut(s)	92, 320, 448, 458, 528, 629, 646, 698
Hin6I	GCGC	1 cut(s)	715
HinP1I	GCGC	1 cut(s)	715
HinfI	GANTC	2 cut(s)	268, 482
HpaII	CCGG	1 cut(s)	479
HphI	GGTGA	1 cut(s)	692
Hpy188I	TCNGA	6 cut(s)	13, 112, 196, 232, 430, 739
Hpy188III	TCNNGA	6 cut(s)	24, 185, 236, 265, 278, 695
HpyAV	CCTTC	7 cut(s)	55, 191, 214, 484, 536, 649, 769
HpyCH4V	TGCA	9 cut(s)	129, 251, 355, 378, 442, 539, 549, 726, 836
HpyF10VI	GCNNNNNNNGC	3 cut(s)	321, 525, 723
HpyF3I	CTNAG	3 cut(s)	193, 216, 401
Hsp92II	CATG	8 cut(s)	92, 320, 448, 458, 528, 629, 646, 698
HspAI	GCGC	1 cut(s)	715
Kzo9I	GATC	5 cut(s)	136, 232, 404, 458, 766
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	9 cut(s)	198, 250, 341, 476, 492, 653, 670, 703, 774
Lsp1109I	GCAGC	2 cut(s)	533, 848
LweI	GCATC	1 cut(s)	429
MaeI	CTAG	3 cut(s)	24, 33, 386
MaeIII	GTNAC	4 cut(s)	157, 244, 483, 680
MalI	GATC	5 cut(s)	138, 234, 406, 460, 768
MboI	GATC	5 cut(s)	136, 232, 404, 458, 766
MboII	GAAGA	3 cut(s)	146, 483, 712
MflI	RGATCY	1 cut(s)	458
MluCI	AATT	6 cut(s)	15, 82, 122, 208, 415, 703
MlyI	GAGTC	1 cut(s)	491
MmeI	TCCRAC	1 cut(s)	296
MnlI	CCTC	8 cut(s)	50, 142, 467, 513, 530, 747, 816, 817
MroXI	GAANNNNTTC	1 cut(s)	638
MseI	TTAA	2 cut(s)	336, 850
MslI	CAYNNNNRTG	1 cut(s)	240
MspI	CCGG	1 cut(s)	479
MwoI	GCNNNNNNNGC	3 cut(s)	321, 525, 723
NdeI	CATATG	2 cut(s)	409, 771
NdeII	GATC	5 cut(s)	136, 232, 404, 458, 766
NlaIII	CATG	8 cut(s)	92, 320, 448, 458, 528, 629, 646, 698
NlaIV	GGNNCC	4 cut(s)	6, 38, 66, 460
NmuCI	GTSAC	3 cut(s)	244, 483, 680
NspI	RCATGY	1 cut(s)	448
NspV	TTCGAA	1 cut(s)	595
PaeR7I	CTCGAG	1 cut(s)	504
PagI	TCATGA	1 cut(s)	694
PciI	ACATGT	1 cut(s)	444
PdmI	GAANNNNTTC	1 cut(s)	638
PfeI	GAWTC	1 cut(s)	268
PkrI	GCNGC	2 cut(s)	548, 838
PleI	GAGTC	1 cut(s)	490
PpsI	GAGTC	1 cut(s)	490
PpuMI	RGGWCCY	2 cut(s)	36, 64
PscI	ACATGT	1 cut(s)	444
PshAI	GACNNNNGTC	1 cut(s)	481
Psp5II	RGGWCCY	2 cut(s)	36, 64
PspN4I	GGNNCC	4 cut(s)	6, 38, 66, 460
PspPI	GGNCC	4 cut(s)	36, 64, 476, 517
PspPPI	RGGWCCY	2 cut(s)	36, 64
PspXI	VCTCGAGB	1 cut(s)	504
PstI	CTGCAG	4 cut(s)	131, 253, 357, 838
PstNI	CAGNNNCTG	1 cut(s)	289
PsuI	RGATCY	1 cut(s)	458
RsaI	GTAC	3 cut(s)	78, 360, 832
RsaNI	GTAC	3 cut(s)	77, 359, 831
RseI	CAYNNNNRTG	1 cut(s)	240
SaqAI	TTAA	2 cut(s)	336, 850
SatI	GCNGC	2 cut(s)	547, 837
Sau3AI	GATC	5 cut(s)	136, 232, 404, 458, 766
Sau96I	GGNCC	4 cut(s)	36, 64, 476, 517
ScaI	AGTACT	1 cut(s)	832
SchI	GAGTC	1 cut(s)	491
SetI	ASST	7 cut(s)	100, 360, 391, 505, 682, 758, 841
SfaNI	GCATC	1 cut(s)	429
SfcI	CTRYAG	5 cut(s)	127, 162, 249, 353, 834
Sfr274I	CTCGAG	1 cut(s)	504
SfuI	TTCGAA	1 cut(s)	595
SinI	GGWCC	3 cut(s)	36, 64, 476
SlaI	CTCGAG	1 cut(s)	504
SmiMI	CAYNNNNRTG	1 cut(s)	240
SmlI	CTYRAG	1 cut(s)	504
SmoI	CTYRAG	1 cut(s)	504
Sse9I	AATT	6 cut(s)	15, 82, 122, 208, 415, 703
SsiI	CCGC	1 cut(s)	340
SspI	AATATT	1 cut(s)	397
SspMI	CTAG	3 cut(s)	24, 33, 386
TaqI	TCGA	5 cut(s)	212, 469, 505, 595, 649
TasI	AATT	6 cut(s)	15, 82, 122, 208, 415, 703
TatI	WGTACW	1 cut(s)	830
TfiI	GAWTC	1 cut(s)	268
Tru1I	TTAA	2 cut(s)	336, 850
Tru9I	TTAA	2 cut(s)	336, 850
TscAI	CASTG	3 cut(s)	136, 492, 678
TseFI	GTSAC	3 cut(s)	244, 483, 680
TseI	GCWGC	2 cut(s)	546, 836
Tsp45I	GTSAC	3 cut(s)	244, 483, 680
TspDTI	ATGAA	5 cut(s)	9, 93, 168, 631, 788
TspRI	CASTG	3 cut(s)	136, 492, 678
VpaK11BI	GGWCC	3 cut(s)	36, 64, 476
XapI	RAATTY	4 cut(s)	15, 122, 208, 415
XbaI	TCTAGA	1 cut(s)	23
XceI	RCATGY	1 cut(s)	448
XhoI	CTCGAG	1 cut(s)	504
XmnI	GAANNNNTTC	1 cut(s)	638
XspI	CTAG	3 cut(s)	24, 33, 386
ZrmI	AGTACT	1 cut(s)	832

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.