Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000154.1

Orthogroup ID

OG0005990

Physical Location & Seq

Genomic Coordinates Reverse (-)

21487 .. 23996

Gene Structure 2510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000154.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

atgtataacaactcctcctgtgttgttcagagccaaccctcatcatctcatgattctcatccgaaagaagctctgcctttaataaacaaactaaaccctagaggagcacaattagaggaagaggaagagggcacaagtcacaaccccaagaacaaagctgatgtcgatgatgatgtagccctacgtataggcctcccaagtagtaattatagtagtgatccaggtagtggtggtatggaagtagatcaatctaatgatgatgaattaggagcagctgcgagtgtgggcagattaaacaagggtcattactggattcccaccccttctcagattctaaatggcccaactcaattctcgtgtcctctgtgcttcaaaacctttaacagatacaataacttgcagatgcatatgtggggacatggatctcaatacaggaaaggaccggactctctaaaaggaaataagcccacagcaatgctgagactcccttgctactgctgcgcacaaggttgcaagcacaacattgaccacccaagagccaaacaactcaaggacttcagaactctccaagcacattacaagagaaagcatgggataaggtccttcatctgcaaaagatgtggcaagtcacttgctctgaaaggtgattggagaactcatgaaaaaaactgtggcaagatttggcattgcatttgcggctctgaatttaagcacaagagatctctcaaagaccacattaagtccttcggtgaaggacatggagctttcgatatcgagtattttgaagaggatgatgaaccagcatctgaaatagaacacatgtgtggtaccgtgttcgatacaagcgggtctccatgctggtttggaactttggatgaattaatggatgatggtgttgagccgtccgagacgcctctgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0008152 GO:0009058 GO:0009812 GO:0009813 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0140110 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2 zf-C2H2_4 zf-C2H2_6

Protein Analysis

306

Amino Acids

34.21

Weight (kDa)

6.34

Isoelectric Point (pI)

53.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34790
fragaria_vesca	FvH4_5g37050
malus_domestica	MD02G1313400.v1.1 MD07G1008700.v1.1
prunus_persica	Prupe.1G519400_v2.0.a1
pyrus_communis	pycom07g00750
rosa_chinensis	RchiOBHm_Chr1g0315831 RchiOBHm_Chr7g0243841
rosa_laevigata	RLG00000000829 RLG00000030730
rosa_multiflora	Rmu_sc0003888.1_g000005 Rmu_sc0011973.1_g000005 Rmu_ssc0000154.1_g000005
rosa_roxburghii	Rroxscaffold_3G00221730 Rroxscaffold_4G00331410
rosa_rugosa	Rorug01G0005800 Rorug01G0005900 Rorug07G0321800
rosa_samantha	Rh1AG016800 Rh1BG009300 Rh1DG009800 Rh7AG476400 Rh7BG447600 Rh7CG494600 Rh7DG461700
rosa_wichuraiana	Rw1G000990 Rw7G039760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	502
Acc65I	GGTACC	1 cut(s)	827
AccB1I	GGYRCC	1 cut(s)	827
AccB7I	CCANNNNNTGG	1 cut(s)	227
AciI	CCGC	2 cut(s)	696, 846
AclWI	GGATC	2 cut(s)	212, 430
AcsI	RAATTY	1 cut(s)	704
AcuI	CTGAAG	1 cut(s)	541
AcyI	GRCGYC	1 cut(s)	911
AfaI	GTAC	1 cut(s)	829
AfiI	CCNNNNNNNGG	1 cut(s)	227
AflIII	ACRYGT	1 cut(s)	819
AgsI	TTSAA	2 cut(s)	373, 785
AjnI	CCWGG	1 cut(s)	220
AleI	CACNNNNGTG	1 cut(s)	822
AluBI	AGCT	4 cut(s)	71, 158, 275, 764
AluI	AGCT	4 cut(s)	71, 158, 275, 764
Alw21I	GWGCWC	1 cut(s)	109
Alw26I	GTCTC	3 cut(s)	475, 855, 902
AlwI	GGATC	2 cut(s)	212, 430
AlwNI	CAGNNNCTG	1 cut(s)	806
AoxI	GGCC	2 cut(s)	190, 340
ApeKI	GCWGC	3 cut(s)	272, 275, 498
ApoI	RAATTY	1 cut(s)	704
ArsI	GACNNNNNNTTYG	2 cut(s)	147, 179
AseI	ATTAAT	1 cut(s)	881
Asp718I	GGTACC	1 cut(s)	827
AspLEI	GCGC	1 cut(s)	503
AspS9I	GGNCC	3 cut(s)	341, 440, 600
AsuHPI	GGTGA	2 cut(s)	656, 761
AvaII	GGWCC	2 cut(s)	440, 600
BaeGI	GKGCMC	1 cut(s)	134
BanI	GGYRCC	1 cut(s)	827
BauI	CACGAG	1 cut(s)	355
Bbv12I	GWGCWC	1 cut(s)	109
BbvI	GCAGC	3 cut(s)	262, 284, 485
BccI	CCATC	1 cut(s)	884
BceAI	ACGGC	1 cut(s)	886
BciT130I	CCWGG	1 cut(s)	222
BcoDI	GTCTC	3 cut(s)	475, 855, 902
BfaI	CTAG	1 cut(s)	99
BglII	AGATCT	1 cut(s)	719
BisI	GCNGC	4 cut(s)	273, 276, 499, 697
BlsI	GCNGC	4 cut(s)	274, 277, 500, 698
Bme1390I	CCNGG	1 cut(s)	222
Bme18I	GGWCC	2 cut(s)	440, 600
BmgT120I	GGNCC	3 cut(s)	341, 440, 600
BmiI	GGNNCC	1 cut(s)	829
BmrFI	CCNGG	1 cut(s)	222
BmsI	GCATC	2 cut(s)	393, 812
BpuEI	CTTGAG	1 cut(s)	533
BsaAI	YACGTR	1 cut(s)	185
BsaBI	GATNNNNATC	1 cut(s)	57
BsaHI	GRCGYC	1 cut(s)	911
BsaI	GGTCTC	1 cut(s)	855
BsaWI	WCCGGW	1 cut(s)	442
BsaXI	ACNNNNNCTCC	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	1 cut(s)	227
Bse1I	ACTGG	1 cut(s)	314
Bse3DI	GCAATG	2 cut(s)	480, 685
Bse8I	GATNNNNATC	1 cut(s)	57
BseBI	CCWGG	1 cut(s)	222
BseGI	GGATG	4 cut(s)	58, 796, 880, 892
BseJI	GATNNNNATC	1 cut(s)	57
BseLI	CCNNNNNNNGG	1 cut(s)	227
BseMI	GCAATG	2 cut(s)	480, 685
BseMII	CTCAG	2 cut(s)	341, 470
BseNI	ACTGG	1 cut(s)	314
BseRI	GAGGAG	2 cut(s)	4, 117
BseSI	GKGCMC	1 cut(s)	134
BseXI	GCAGC	3 cut(s)	262, 284, 485
BshFI	GGCC	2 cut(s)	192, 342
BshNI	GGYRCC	1 cut(s)	827
BsiHKAI	GWGCWC	1 cut(s)	109
BsiSI	CCGG	1 cut(s)	443
BslFI	GGGAC	1 cut(s)	429
BslI	CCNNNNNNNGG	1 cut(s)	227
BsmAI	GTCTC	3 cut(s)	475, 855, 902
BsmBI	CGTCTC	1 cut(s)	902
BsmFI	GGGAC	1 cut(s)	429
BsnI	GGCC	2 cut(s)	192, 342
Bso31I	GGTCTC	1 cut(s)	855
Bsp1286I	GDGCHC	2 cut(s)	109, 134
Bsp143I	GATC	4 cut(s)	217, 244, 422, 719
BspACI	CCGC	2 cut(s)	696, 846
BspANI	GGCC	2 cut(s)	192, 342
BspCNI	CTCAG	2 cut(s)	340, 471
BspHI	TCATGA	2 cut(s)	49, 658
BspLI	GGNNCC	1 cut(s)	829
BspPI	GGATC	2 cut(s)	212, 430
BspT107I	GGYRCC	1 cut(s)	827
BspTNI	GGTCTC	1 cut(s)	855
BsrDI	GCAATG	2 cut(s)	480, 685
BsrI	ACTGG	1 cut(s)	314
BssMI	GATC	4 cut(s)	217, 244, 422, 719
BssNI	GRCGYC	1 cut(s)	911
BssSI	CACGAG	1 cut(s)	355
Bst2BI	CACGAG	1 cut(s)	355
Bst2UI	CCWGG	1 cut(s)	222
Bst4CI	ACNGT	2 cut(s)	671, 832
Bst6I	CTCTTC	3 cut(s)	114, 120, 780
BstACI	GRCGYC	1 cut(s)	911
BstBAI	YACGTR	1 cut(s)	185
BstC8I	GCNNGC	1 cut(s)	515
BstDEI	CTNAG	2 cut(s)	327, 479
BstF5I	GGATG	4 cut(s)	58, 796, 880, 892
BstHHI	GCGC	1 cut(s)	503
BstKTI	GATC	4 cut(s)	220, 247, 425, 722
BstMAI	GTCTC	3 cut(s)	475, 855, 902
BstMBI	GATC	4 cut(s)	217, 244, 422, 719
BstMWI	GCNNNNNNNGC	2 cut(s)	498, 696
BstNI	CCWGG	1 cut(s)	222
BstNSI	RCATGY	1 cut(s)	823
BstSCI	CCNGG	1 cut(s)	220
BstSLI	GKGCMC	1 cut(s)	134
BstSNI	TACGTA	1 cut(s)	185
BstV1I	GCAGC	3 cut(s)	262, 284, 485
BstX2I	RGATCY	2 cut(s)	422, 719
BstYI	RGATCY	2 cut(s)	422, 719
BsuRI	GGCC	2 cut(s)	192, 342
BtsCI	GGATG	4 cut(s)	58, 796, 880, 892
Cac8I	GCNNGC	1 cut(s)	515
CaiI	CAGNNNCTG	1 cut(s)	806
CciI	TCATGA	2 cut(s)	49, 658
CfoI	GCGC	1 cut(s)	503
Cfr13I	GGNCC	3 cut(s)	341, 440, 600
Csp6I	GTAC	1 cut(s)	828
CspCI	CAANNNNNGTGG	2 cut(s)	601, 636
CviAII	CATG	7 cut(s)	50, 419, 590, 659, 758, 820, 855
CviQI	GTAC	1 cut(s)	828
DdeI	CTNAG	2 cut(s)	327, 479
DpnI	GATC	4 cut(s)	219, 246, 424, 721
DpnII	GATC	4 cut(s)	217, 244, 422, 719
Eam1104I	CTCTTC	3 cut(s)	114, 120, 780
EarI	CTCTTC	3 cut(s)	114, 120, 780
Eco105I	TACGTA	1 cut(s)	185
Eco147I	AGGCCT	1 cut(s)	192
Eco31I	GGTCTC	1 cut(s)	855
Eco32I	GATATC	1 cut(s)	772
Eco47I	GGWCC	2 cut(s)	440, 600
Eco57I	CTGAAG	1 cut(s)	541
EcoO109I	RGGNCCY	1 cut(s)	600
EcoRII	CCWGG	1 cut(s)	220
EcoRV	GATATC	1 cut(s)	772
EcoT22I	ATGCAT	1 cut(s)	408
Esp3I	CGTCTC	1 cut(s)	902
FaeI	CATG	7 cut(s)	53, 422, 593, 662, 761, 823, 858
FaqI	GGGAC	1 cut(s)	429
FatI	CATG	7 cut(s)	49, 418, 589, 658, 757, 819, 854
FauI	CCCGC	1 cut(s)	839
FauNDI	CATATG	1 cut(s)	408
Fnu4HI	GCNGC	4 cut(s)	273, 276, 499, 697
FokI	GGATG	4 cut(s)	45, 803, 887, 899
Fsp4HI	GCNGC	4 cut(s)	273, 276, 499, 697
FspBI	CTAG	1 cut(s)	99
FspI	TGCGCA	1 cut(s)	502
GlaI	GCGC	1 cut(s)	502
GluI	GCNGC	4 cut(s)	273, 276, 499, 697
HaeIII	GGCC	2 cut(s)	192, 342
HapII	CCGG	1 cut(s)	443
HhaI	GCGC	1 cut(s)	503
Hin1I	GRCGYC	1 cut(s)	911
Hin1II	CATG	7 cut(s)	53, 422, 593, 662, 761, 823, 858
Hin6I	GCGC	1 cut(s)	501
HinP1I	GCGC	1 cut(s)	501
HinfI	GANTC	5 cut(s)	53, 313, 331, 446, 483
HpaII	CCGG	1 cut(s)	443
HphI	GGTGA	2 cut(s)	656, 761
Hpy188I	TCNGA	8 cut(s)	30, 63, 330, 560, 639, 703, 808, 907
Hpy188III	TCNNGA	2 cut(s)	50, 659
HpyAV	CCTTC	4 cut(s)	333, 613, 746, 754
HpyCH4III	ACNGT	2 cut(s)	671, 832
HpyCH4IV	ACGT	1 cut(s)	184
HpyCH4V	TGCA	5 cut(s)	400, 406, 513, 612, 690
HpyF10VI	GCNNNNNNNGC	2 cut(s)	498, 696
HpyF3I	CTNAG	2 cut(s)	327, 479
HpySE526I	ACGT	1 cut(s)	184
Hsp92I	GRCGYC	1 cut(s)	911
Hsp92II	CATG	7 cut(s)	53, 422, 593, 662, 761, 823, 858
HspAI	GCGC	1 cut(s)	501
KpnI	GGTACC	1 cut(s)	831
Kzo9I	GATC	4 cut(s)	217, 244, 422, 719
LmnI	GCTCC	3 cut(s)	104, 269, 761
LpnPI	CCDG	8 cut(s)	31, 207, 234, 295, 418, 456, 813, 844
Lsp1109I	GCAGC	3 cut(s)	262, 284, 485
LweI	GCATC	2 cut(s)	393, 812
MaeI	CTAG	1 cut(s)	99
MaeII	ACGT	1 cut(s)	184
MaeIII	GTNAC	2 cut(s)	137, 627
MalI	GATC	4 cut(s)	219, 246, 424, 721
MboI	GATC	4 cut(s)	217, 244, 422, 719
MboII	GAAGA	3 cut(s)	131, 137, 797
MflI	RGATCY	2 cut(s)	422, 719
MhlI	GDGCHC	2 cut(s)	109, 134
MluCI	AATT	6 cut(s)	110, 205, 263, 350, 704, 878
MlyI	GAGTC	2 cut(s)	440, 477
MnlI	CCTC	9 cut(s)	25, 49, 95, 109, 115, 121, 203, 372, 781
Mph1103I	ATGCAT	1 cut(s)	408
MseI	TTAA	6 cut(s)	80, 293, 381, 708, 738, 881
MslI	CAYNNNNRTG	2 cut(s)	473, 822
MspA1I	CMGCKG	1 cut(s)	275
MspI	CCGG	1 cut(s)	443
MspR9I	CCNGG	1 cut(s)	222
MvaI	CCWGG	1 cut(s)	222
MwoI	GCNNNNNNNGC	2 cut(s)	498, 696
NdeI	CATATG	1 cut(s)	408
NdeII	GATC	4 cut(s)	217, 244, 422, 719
NlaIII	CATG	7 cut(s)	53, 422, 593, 662, 761, 823, 858
NlaIV	GGNNCC	1 cut(s)	829
NmuCI	GTSAC	2 cut(s)	137, 627
NsbI	TGCGCA	1 cut(s)	502
NsiI	ATGCAT	1 cut(s)	408
NspI	RCATGY	1 cut(s)	823
OliI	CACNNNNGTG	1 cut(s)	822
PagI	TCATGA	2 cut(s)	49, 658
PceI	AGGCCT	1 cut(s)	192
PciI	ACATGT	1 cut(s)	819
PfeI	GAWTC	3 cut(s)	53, 313, 331
PflMI	CCANNNNNTGG	1 cut(s)	227
PkrI	GCNGC	4 cut(s)	274, 277, 500, 698
PleI	GAGTC	2 cut(s)	440, 477
PpsI	GAGTC	2 cut(s)	440, 477
Ppu21I	YACGTR	1 cut(s)	185
PpuMI	RGGWCCY	1 cut(s)	600
PscI	ACATGT	1 cut(s)	819
PshBI	ATTAAT	1 cut(s)	881
Psp5II	RGGWCCY	1 cut(s)	600
Psp6I	CCWGG	1 cut(s)	220
PspGI	CCWGG	1 cut(s)	220
PspN4I	GGNNCC	1 cut(s)	829
PspPI	GGNCC	3 cut(s)	341, 440, 600
PspPPI	RGGWCCY	1 cut(s)	600
PstNI	CAGNNNCTG	1 cut(s)	806
PsuI	RGATCY	2 cut(s)	422, 719
PvuII	CAGCTG	1 cut(s)	275
RsaI	GTAC	1 cut(s)	829
RsaNI	GTAC	1 cut(s)	828
RseI	CAYNNNNRTG	2 cut(s)	473, 822
SaqAI	TTAA	6 cut(s)	80, 293, 381, 708, 738, 881
SatI	GCNGC	4 cut(s)	273, 276, 499, 697
Sau3AI	GATC	4 cut(s)	217, 244, 422, 719
Sau96I	GGNCC	3 cut(s)	341, 440, 600
SchI	GAGTC	2 cut(s)	440, 477
ScrFI	CCNGG	1 cut(s)	222
SduI	GDGCHC	2 cut(s)	109, 134
SfaNI	GCATC	2 cut(s)	393, 812
SinI	GGWCC	2 cut(s)	440, 600
SmiMI	CAYNNNNRTG	2 cut(s)	473, 822
SmlI	CTYRAG	1 cut(s)	548
SmoI	CTYRAG	1 cut(s)	548
SnaBI	TACGTA	1 cut(s)	185
Sse9I	AATT	6 cut(s)	110, 205, 263, 350, 704, 878
SseBI	AGGCCT	1 cut(s)	192
SsiI	CCGC	2 cut(s)	696, 846
SspMI	CTAG	1 cut(s)	99
StuI	AGGCCT	1 cut(s)	192
StyD4I	CCNGG	1 cut(s)	220
TaaI	ACNGT	2 cut(s)	671, 832
TaiI	ACGT	1 cut(s)	187
TaqI	TCGA	4 cut(s)	165, 768, 774, 837
TasI	AATT	6 cut(s)	110, 205, 263, 350, 704, 878
TauI	GCSGC	1 cut(s)	699
TfiI	GAWTC	3 cut(s)	53, 313, 331
Tru1I	TTAA	6 cut(s)	80, 293, 381, 708, 738, 881
Tru9I	TTAA	6 cut(s)	80, 293, 381, 708, 738, 881
TseFI	GTSAC	2 cut(s)	137, 627
TseI	GCWGC	3 cut(s)	272, 275, 498
Tsp45I	GTSAC	2 cut(s)	137, 627
TspDTI	ATGAA	5 cut(s)	276, 595, 675, 810, 891
Van91I	CCANNNNNTGG	1 cut(s)	227
VpaK11BI	GGWCC	2 cut(s)	440, 600
VspI	ATTAAT	1 cut(s)	881
XapI	RAATTY	1 cut(s)	704
XceI	RCATGY	1 cut(s)	823
XspI	CTAG	1 cut(s)	99
Zsp2I	ATGCAT	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.