Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005990

Physical Location & Seq

Genomic Coordinates Forward (+)

42652526 .. 42653786

Gene Structure 1261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G519400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGAGCCCTCTGAATTTTCATCTAGCTCCTCCCCCTTCTTTTCTGCCAATGATCATGTTGAGACCCTCAATCTTTTTCCAAATTATAAGACCCCAAATGCTTATCTTGAACCTCTACCACTGATAAACTGCCTGCTTCGTTCACCTGAGCATCAGGTGCCTAATTACCATGATGAAAACCCTAAAGCATGCAATGAAGATCATAAAGAGGATGAAGTCACTGTGGCCCTGCACATTGGCCTTCCAGAATATTCAGATGGCTCTATGAACTATTTGAATGAGAAGGAAGATGAAAACAATGTGACAGCACAAAAATATTGGATTCCAACTCCAGAACAAATACTCATTGGCTTCACCCATTTTTCTTGCCATGTCTGCTTCAAAACATTTAACCGCTACAATAATCTGCAGATGCACATGTGGGGGCATGGGTCGCAGTATCGAAGAGGGCCAGAGTCACTGAAAGGAACACAGCCTCGAGCCATGCTAAACATCCCATGCTATTGCTGTGCAGAAGGTTGCAAAAACAACATAGACCACCCAAGAGCAAAGCCTCTAAAGGACTTTCGGACCCTTCAAACACACTACAAGAGGAAGCATGGCATGAAGCCCTTCATGTGTCGCAAGTGTGGGAAGCTGCTGGCAGTGAAAGGAGACTGGAGAACACATGAGAAGAATTGTGGCAAGCGCTGGCTTTGCATTTGTGGTTCGGATTTTAAGCACAAGAGATCACTCAAAGACCATATCAAGGCTTTTGGCCATGGCCATAGACCTTTTCCACCTAATTCTTTTGATGAAGTCAGGGATCTTGATGAGGATACTAGTACCACACCATCGTTGTTTAAAGGCATGTCAAGTGACACAACCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0008152 GO:0009058 GO:0009812 GO:0009813 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0140110 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2

Protein Analysis

291

Amino Acids

33.44

Weight (kDa)

7.93

Isoelectric Point (pI)

53.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34790
fragaria_vesca	FvH4_5g37050
malus_domestica	MD02G1313400.v1.1 MD07G1008700.v1.1
prunus_persica	Prupe.1G519400_v2.0.a1
pyrus_communis	pycom07g00750
rosa_chinensis	RchiOBHm_Chr1g0315831 RchiOBHm_Chr7g0243841
rosa_laevigata	RLG00000000829 RLG00000030730
rosa_multiflora	Rmu_sc0003888.1_g000005 Rmu_sc0011973.1_g000005 Rmu_ssc0000154.1_g000005
rosa_roxburghii	Rroxscaffold_3G00221730 Rroxscaffold_4G00331410
rosa_rugosa	Rorug01G0005800 Rorug01G0005900 Rorug07G0321800
rosa_samantha	Rh1AG016800 Rh1BG009300 Rh1DG009800 Rh7AG476400 Rh7BG447600 Rh7CG494600 Rh7DG461700
rosa_wichuraiana	Rw1G000990 Rw7G039760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	87
AccB1I	GGYRCC	1 cut(s)	157
AciI	CCGC	1 cut(s)	394
AclWI	GGATC	1 cut(s)	813
AcoI	YGGCCR	2 cut(s)	757, 763
AcsI	RAATTY	1 cut(s)	14
AfaI	GTAC	1 cut(s)	826
AfeI	AGCGCT	1 cut(s)	689
AfiI	CCNNNNNNNGG	1 cut(s)	748
AflIII	ACRYGT	1 cut(s)	417
AgsI	TTSAA	4 cut(s)	110, 277, 382, 578
AhlI	ACTAGT	1 cut(s)	821
AluBI	AGCT	2 cut(s)	27, 637
AluI	AGCT	2 cut(s)	27, 637
Alw26I	GTCTC	2 cut(s)	56, 648
AlwI	GGATC	1 cut(s)	813
Ama87I	CYCGRG	1 cut(s)	477
Aor51HI	AGCGCT	1 cut(s)	689
AoxI	GGCC	5 cut(s)	225, 238, 449, 757, 763
ApeKI	GCWGC	1 cut(s)	637
ApoI	RAATTY	1 cut(s)	14
Asp700I	GAANNNNTTC	1 cut(s)	611
AspLEI	GCGC	1 cut(s)	690
AspS9I	GGNCC	3 cut(s)	226, 449, 570
AsuHPI	GGTGA	2 cut(s)	135, 346
AvaI	CYCGRG	1 cut(s)	477
AvaII	GGWCC	1 cut(s)	570
BalI	TGGCCA	2 cut(s)	759, 765
BanI	GGYRCC	1 cut(s)	157
BanII	GRGCYC	1 cut(s)	9
BbvI	GCAGC	1 cut(s)	624
BccI	CCATC	2 cut(s)	251, 841
BciVI	GTATCC	1 cut(s)	811
BclI	TGATCA	1 cut(s)	52
BcoDI	GTCTC	2 cut(s)	56, 648
BcuI	ACTAGT	1 cut(s)	821
BfaI	CTAG	2 cut(s)	24, 822
BfmI	CTRYAG	1 cut(s)	407
BfoI	RGCGCY	1 cut(s)	691
BfuI	GTATCC	1 cut(s)	811
BisI	GCNGC	1 cut(s)	638
BlsI	GCNGC	1 cut(s)	639
Bme18I	GGWCC	1 cut(s)	570
BmeT110I	CYCGRG	1 cut(s)	477
BmgT120I	GGNCC	3 cut(s)	226, 449, 570
BmiI	GGNNCC	3 cut(s)	6, 159, 572
BmsI	GCATC	2 cut(s)	160, 402
BpmI	CTGGAG	2 cut(s)	315, 679
Bpu10I	CCTNAGC	1 cut(s)	147
BsaI	GGTCTC	1 cut(s)	56
BsaJI	CCNNGG	1 cut(s)	760
Bsc4I	CCNNNNNNNGG	1 cut(s)	748
Bse1I	ACTGG	1 cut(s)	662
Bse3DI	GCAATG	1 cut(s)	199
BseDI	CCNNGG	1 cut(s)	760
BseGI	GGATG	2 cut(s)	217, 492
BseLI	CCNNNNNNNGG	1 cut(s)	748
BseMI	GCAATG	1 cut(s)	199
BseMII	CTCAG	1 cut(s)	138
BseNI	ACTGG	1 cut(s)	662
BseRI	GAGGAG	1 cut(s)	19
BseXI	GCAGC	1 cut(s)	624
BsgI	GTGCAG	2 cut(s)	215, 531
BshFI	GGCC	5 cut(s)	227, 240, 451, 759, 765
BshNI	GGYRCC	1 cut(s)	157
BsiHKCI	CYCGRG	1 cut(s)	477
BslI	CCNNNNNNNGG	1 cut(s)	748
BsmAI	GTCTC	2 cut(s)	56, 648
BsnI	GGCC	5 cut(s)	227, 240, 451, 759, 765
Bso31I	GGTCTC	1 cut(s)	56
BsoBI	CYCGRG	1 cut(s)	477
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp143I	GATC	4 cut(s)	52, 199, 728, 805
Bsp19I	CCATGG	1 cut(s)	760
BspACI	CCGC	1 cut(s)	394
BspANI	GGCC	5 cut(s)	227, 240, 451, 759, 765
BspCNI	CTCAG	1 cut(s)	139
BspLI	GGNNCC	3 cut(s)	6, 159, 572
BspMAI	CTGCAG	1 cut(s)	411
BspPI	GGATC	1 cut(s)	813
BspT107I	GGYRCC	1 cut(s)	157
BspTNI	GGTCTC	1 cut(s)	56
BsrDI	GCAATG	1 cut(s)	199
BsrI	ACTGG	1 cut(s)	662
BssECI	CCNNGG	1 cut(s)	760
BssMI	GATC	4 cut(s)	52, 199, 728, 805
BssT1I	CCWWGG	1 cut(s)	760
Bst4CI	ACNGT	1 cut(s)	223
Bst6I	CTCTTC	1 cut(s)	439
BstAPI	GCANNNNNTGC	1 cut(s)	157
BstC8I	GCNNGC	5 cut(s)	134, 190, 642, 686, 692
BstDEI	CTNAG	1 cut(s)	147
BstDSI	CCRYGG	1 cut(s)	760
BstF5I	GGATG	2 cut(s)	217, 492
BstH2I	RGCGCY	1 cut(s)	691
BstHHI	GCGC	1 cut(s)	690
BstKTI	GATC	4 cut(s)	55, 202, 731, 808
BstMAI	GTCTC	2 cut(s)	56, 648
BstMBI	GATC	4 cut(s)	52, 199, 728, 805
BstMWI	GCNNNNNNNGC	4 cut(s)	157, 375, 433, 696
BstNSI	RCATGY	3 cut(s)	192, 421, 853
BstSFI	CTRYAG	1 cut(s)	407
BstV1I	GCAGC	1 cut(s)	624
BstX2I	RGATCY	1 cut(s)	805
BstYI	RGATCY	1 cut(s)	805
BsuI	GTATCC	1 cut(s)	811
BsuRI	GGCC	5 cut(s)	227, 240, 451, 759, 765
BtgI	CCRYGG	1 cut(s)	760
BtsCI	GGATG	2 cut(s)	217, 492
BtsI	GCAGTG	1 cut(s)	651
BtsIMutI	CAGTG	4 cut(s)	119, 219, 458, 651
Cac8I	GCNNGC	5 cut(s)	134, 190, 642, 686, 692
CfoI	GCGC	1 cut(s)	690
Cfr13I	GGNCC	3 cut(s)	226, 449, 570
Csp6I	GTAC	1 cut(s)	825
CviQI	GTAC	1 cut(s)	825
DdeI	CTNAG	1 cut(s)	147
DpnI	GATC	4 cut(s)	54, 201, 730, 807
DpnII	GATC	4 cut(s)	52, 199, 728, 805
DraI	TTTAAA	1 cut(s)	844
EaeI	YGGCCR	2 cut(s)	757, 763
Eam1104I	CTCTTC	1 cut(s)	439
EarI	CTCTTC	1 cut(s)	439
Eco130I	CCWWGG	1 cut(s)	760
Eco24I	GRGCYC	1 cut(s)	9
Eco31I	GGTCTC	1 cut(s)	56
Eco47I	GGWCC	1 cut(s)	570
Eco47III	AGCGCT	1 cut(s)	689
Eco88I	CYCGRG	1 cut(s)	477
EcoT14I	CCWWGG	1 cut(s)	760
EcoT38I	GRGCYC	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	760
FbaI	TGATCA	1 cut(s)	52
Fnu4HI	GCNGC	1 cut(s)	638
FokI	GGATG	2 cut(s)	224, 479
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	1 cut(s)	638
FspBI	CTAG	2 cut(s)	24, 822
GlaI	GCGC	1 cut(s)	689
GluI	GCNGC	1 cut(s)	638
GsuI	CTGGAG	2 cut(s)	315, 679
HaeII	RGCGCY	1 cut(s)	691
HaeIII	GGCC	5 cut(s)	227, 240, 451, 759, 765
HhaI	GCGC	1 cut(s)	690
Hin6I	GCGC	1 cut(s)	688
HinP1I	GCGC	1 cut(s)	688
HinfI	GANTC	2 cut(s)	322, 455
HphI	GGTGA	2 cut(s)	135, 346
Hpy166II	GTNNAC	1 cut(s)	143
Hpy188I	TCNGA	4 cut(s)	13, 256, 570, 712
Hpy188III	TCNNGA	4 cut(s)	107, 245, 332, 809
Hpy8I	GTNNAC	1 cut(s)	143
HpyAV	CCTTC	6 cut(s)	46, 251, 277, 509, 584, 622
HpyCH4III	ACNGT	1 cut(s)	223
HpyCH4V	TGCA	7 cut(s)	192, 232, 409, 415, 512, 522, 699
HpyF10VI	GCNNNNNNNGC	4 cut(s)	157, 375, 433, 696
HpyF3I	CTNAG	1 cut(s)	147
HspAI	GCGC	1 cut(s)	688
Ksp22I	TGATCA	1 cut(s)	52
Kzo9I	GATC	4 cut(s)	52, 199, 728, 805
LmnI	GCTCC	2 cut(s)	4, 32
Lsp1109I	GCAGC	1 cut(s)	624
LweI	GCATC	2 cut(s)	160, 402
MaeI	CTAG	2 cut(s)	24, 822
MaeIII	GTNAC	4 cut(s)	217, 301, 456, 857
MalI	GATC	4 cut(s)	54, 201, 730, 807
MboI	GATC	4 cut(s)	52, 199, 728, 805
MboII	GAAGA	4 cut(s)	209, 299, 456, 685
MflI	RGATCY	1 cut(s)	805
MhlI	GDGCHC	1 cut(s)	9
MlsI	TGGCCA	2 cut(s)	759, 765
MluCI	AATT	5 cut(s)	14, 82, 163, 676, 784
MluNI	TGGCCA	2 cut(s)	759, 765
MlyI	GAGTC	1 cut(s)	464
MmeI	TCCRAC	1 cut(s)	350
Mox20I	TGGCCA	2 cut(s)	759, 765
MroXI	GAANNNNTTC	1 cut(s)	611
MscI	TGGCCA	2 cut(s)	759, 765
MseI	TTAA	4 cut(s)	390, 717, 843, 871
Msp20I	TGGCCA	2 cut(s)	759, 765
MwoI	GCNNNNNNNGC	4 cut(s)	157, 375, 433, 696
NcoI	CCATGG	1 cut(s)	760
NdeII	GATC	4 cut(s)	52, 199, 728, 805
NlaIV	GGNNCC	3 cut(s)	6, 159, 572
NmuCI	GTSAC	4 cut(s)	217, 301, 456, 857
NspI	RCATGY	3 cut(s)	192, 421, 853
PaeI	GCATGC	1 cut(s)	192
PaeR7I	CTCGAG	1 cut(s)	477
PciI	ACATGT	1 cut(s)	417
PdmI	GAANNNNTTC	1 cut(s)	611
PfeI	GAWTC	1 cut(s)	322
PkrI	GCNGC	1 cut(s)	639
PleI	GAGTC	1 cut(s)	463
PpsI	GAGTC	1 cut(s)	463
PscI	ACATGT	1 cut(s)	417
PsiI	TTATAA	1 cut(s)	87
PspN4I	GGNNCC	3 cut(s)	6, 159, 572
PspPI	GGNCC	3 cut(s)	226, 449, 570
PspXI	VCTCGAGB	1 cut(s)	477
PstI	CTGCAG	1 cut(s)	411
PsuI	RGATCY	1 cut(s)	805
RsaI	GTAC	1 cut(s)	826
RsaNI	GTAC	1 cut(s)	825
SaqAI	TTAA	4 cut(s)	390, 717, 843, 871
SatI	GCNGC	1 cut(s)	638
Sau3AI	GATC	4 cut(s)	52, 199, 728, 805
Sau96I	GGNCC	3 cut(s)	226, 449, 570
SchI	GAGTC	1 cut(s)	464
SduI	GDGCHC	1 cut(s)	9
SetI	ASST	9 cut(s)	29, 115, 148, 159, 520, 639, 775, 784, 869
SfaNI	GCATC	2 cut(s)	160, 402
SfcI	CTRYAG	1 cut(s)	407
Sfr274I	CTCGAG	1 cut(s)	477
SinI	GGWCC	1 cut(s)	570
SlaI	CTCGAG	1 cut(s)	477
SmlI	CTYRAG	1 cut(s)	477
SmoI	CTYRAG	1 cut(s)	477
SpeI	ACTAGT	1 cut(s)	821
SphI	GCATGC	1 cut(s)	192
Sse9I	AATT	5 cut(s)	14, 82, 163, 676, 784
SsiI	CCGC	1 cut(s)	394
SspI	AATATT	2 cut(s)	251, 317
SspMI	CTAG	2 cut(s)	24, 822
StyI	CCWWGG	1 cut(s)	760
TaaI	ACNGT	1 cut(s)	223
TaqI	TCGA	2 cut(s)	442, 478
TasI	AATT	5 cut(s)	14, 82, 163, 676, 784
TfiI	GAWTC	1 cut(s)	322
Tru1I	TTAA	4 cut(s)	390, 717, 843, 871
Tru9I	TTAA	4 cut(s)	390, 717, 843, 871
TscAI	CASTG	4 cut(s)	126, 226, 465, 651
TseFI	GTSAC	4 cut(s)	217, 301, 456, 857
TseI	GCWGC	1 cut(s)	637
Tsp45I	GTSAC	4 cut(s)	217, 301, 456, 857
TspDTI	ATGAA	9 cut(s)	9, 189, 210, 228, 281, 306, 604, 620, 810
TspRI	CASTG	4 cut(s)	126, 226, 465, 651
VpaK11BI	GGWCC	1 cut(s)	570
XapI	RAATTY	1 cut(s)	14
XceI	RCATGY	3 cut(s)	192, 421, 853
XhoI	CTCGAG	1 cut(s)	477
XmnI	GAANNNNTTC	1 cut(s)	611
XspI	CTAG	2 cut(s)	24, 822

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.