Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0005990

Physical Location & Seq

Genomic Coordinates Reverse (-)

61325285 .. 61326483

Gene Structure 1199 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G039760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGAGCCGTCTGAAATTTCATCTAGATTTGCTAGGACCCTCAATCTTTTTCCAAATGAGAAGGACCCGAACCAAGTACCCAATTCCCATGATTTAGGTTTTTCATCATCTGAAAACCCTAAATTCTGCAGTGAAGATCATAATAAAGAGGATGAAGTTACTATAGCCTTACACATTGGCCTTCCTGAATACTCAGACGGCTCTGTGAATTCGACTGAGAAGGAAGTATCGGATCACGAAAATGTGACTGCAGAACAAAAGTTCTGGATTCCAACTCGGGAACAGATACTGATTGGCTTCACTCATTTTTCTTGCCATATCTGCTTCAAAACATTTAACCGCTACAATAATCTGCAGATGCACATGTGGGGGCATGGATCGCAGTATCGAAGAGGACCGGAGTCACTGAAGGGAACACAACCTCGAGCAATGTTGGGCCTCCCATGCTATTGTTGTGCAGAAGGCTGCAAAAACAACATAGACTACCCAAGAGCAAAACCCTTGAAAGACTTTCGAACACTTCAAACTCACTACAAGAGAAAGCATGGCGTGAAACCCTTCATGTGTCGAAAGTGTGGCAAGTTGCTGGCAGTGAAAGGCGACTGGAGAACTCATGAGAAGAATTGTGGCAAGCGCTGGCTTTGCACTTGTGGTTCAGATTTCAAGCACAAGAGGTCATTGAAAGATCATATGAAGGCTTTTGGGTCTGGTCATAGTCCTTTCCCTCCTACTTCTTTTGATGAGGATAGTACTGCAGCTTCCTTTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0008152 GO:0009058 GO:0009812 GO:0009813 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0140110 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2

Protein Analysis

256

Amino Acids

29.31

Weight (kDa)

8.67

Isoelectric Point (pI)

53.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_STOP2_3rd	PF23115	149 - 183	3.1e-19	STOP2-like, C2H2-type zinc finger
C2CH-3rd_BIRD-IDD	PF22995	186 - 210	9.8e-11	BIRD-IDD transcription factor, third C2HC zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34790
fragaria_vesca	FvH4_5g37050
malus_domestica	MD02G1313400.v1.1 MD07G1008700.v1.1
prunus_persica	Prupe.1G519400_v2.0.a1
pyrus_communis	pycom07g00750
rosa_chinensis	RchiOBHm_Chr1g0315831 RchiOBHm_Chr7g0243841
rosa_laevigata	RLG00000000829 RLG00000030730
rosa_multiflora	Rmu_sc0003888.1_g000005 Rmu_sc0011973.1_g000005 Rmu_ssc0000154.1_g000005
rosa_roxburghii	Rroxscaffold_3G00221730 Rroxscaffold_4G00331410
rosa_rugosa	Rorug01G0005800 Rorug01G0005900 Rorug07G0321800
rosa_samantha	Rh1AG016800 Rh1BG009300 Rh1DG009800 Rh7AG476400 Rh7BG447600 Rh7CG494600 Rh7DG461700
rosa_wichuraiana	Rw1G000990 Rw7G039760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	340
AclWI	GGATC	2 cut(s)	240, 385
AcsI	RAATTY	3 cut(s)	15, 122, 208
AcuI	CTGAAG	1 cut(s)	428
AfaI	GTAC	2 cut(s)	78, 751
AfeI	AGCGCT	1 cut(s)	635
AflIII	ACRYGT	1 cut(s)	363
AgsI	TTSAA	5 cut(s)	328, 505, 524, 664, 682
AluBI	AGCT	1 cut(s)	758
AluI	AGCT	1 cut(s)	758
AlwI	GGATC	2 cut(s)	240, 385
AlwNI	CAGNNNCTG	1 cut(s)	289
Ama87I	CYCGRG	2 cut(s)	276, 423
Aor51HI	AGCGCT	1 cut(s)	635
AoxI	GGCC	2 cut(s)	178, 436
ApeKI	GCWGC	2 cut(s)	465, 755
ApoI	RAATTY	3 cut(s)	15, 122, 208
Asp700I	GAANNNNTTC	1 cut(s)	557
AspLEI	GCGC	1 cut(s)	636
AspS9I	GGNCC	4 cut(s)	36, 64, 395, 436
AsuII	TTCGAA	1 cut(s)	514
AvaI	CYCGRG	2 cut(s)	276, 423
AvaII	GGWCC	3 cut(s)	36, 64, 395
BarI	GAAGNNNNNNTAC	1 cut(s)	742
BbvI	GCAGC	2 cut(s)	452, 767
BceAI	ACGGC	1 cut(s)	214
BfaI	CTAG	2 cut(s)	24, 33
BfmI	CTRYAG	5 cut(s)	127, 162, 249, 353, 753
BfoI	RGCGCY	1 cut(s)	637
BisI	GCNGC	2 cut(s)	466, 756
BlsI	GCNGC	2 cut(s)	467, 757
BmcAI	AGTACT	1 cut(s)	751
Bme18I	GGWCC	3 cut(s)	36, 64, 395
BmeT110I	CYCGRG	2 cut(s)	276, 423
BmgT120I	GGNCC	4 cut(s)	36, 64, 395, 436
BmiI	GGNNCC	3 cut(s)	6, 38, 66
BmsI	GCATC	1 cut(s)	348
BoxI	GACNNNNGTC	1 cut(s)	400
BpmI	CTGGAG	1 cut(s)	625
Bpu14I	TTCGAA	1 cut(s)	514
BsaWI	WCCGGW	1 cut(s)	397
Bse1I	ACTGG	1 cut(s)	608
Bse3DI	GCAATG	1 cut(s)	435
BseGI	GGATG	1 cut(s)	157
BseMI	GCAATG	1 cut(s)	435
BseMII	CTCAG	2 cut(s)	207, 207
BseNI	ACTGG	1 cut(s)	608
BseXI	GCAGC	2 cut(s)	452, 767
BsgI	GTGCAG	1 cut(s)	477
BshFI	GGCC	2 cut(s)	180, 438
BsiHKCI	CYCGRG	2 cut(s)	276, 423
BsiSI	CCGG	1 cut(s)	398
BsnI	GGCC	2 cut(s)	180, 438
BsoBI	CYCGRG	2 cut(s)	276, 423
Bsp119I	TTCGAA	1 cut(s)	514
Bsp143I	GATC	4 cut(s)	136, 232, 377, 685
BspACI	CCGC	1 cut(s)	340
BspANI	GGCC	2 cut(s)	180, 438
BspCNI	CTCAG	2 cut(s)	206, 208
BspHI	TCATGA	1 cut(s)	613
BspLI	GGNNCC	3 cut(s)	6, 38, 66
BspMAI	CTGCAG	4 cut(s)	131, 253, 357, 757
BspPI	GGATC	2 cut(s)	240, 385
BspT104I	TTCGAA	1 cut(s)	514
BsrDI	GCAATG	1 cut(s)	435
BsrI	ACTGG	1 cut(s)	608
BssMI	GATC	4 cut(s)	136, 232, 377, 685
Bst6I	CTCTTC	1 cut(s)	385
BstBI	TTCGAA	1 cut(s)	514
BstC8I	GCNNGC	3 cut(s)	588, 632, 638
BstDEI	CTNAG	2 cut(s)	193, 216
BstF5I	GGATG	1 cut(s)	157
BstH2I	RGCGCY	1 cut(s)	637
BstHHI	GCGC	1 cut(s)	636
BstKTI	GATC	4 cut(s)	139, 235, 380, 688
BstMBI	GATC	4 cut(s)	136, 232, 377, 685
BstMWI	GCNNNNNNNGC	4 cut(s)	321, 379, 444, 642
BstNSI	RCATGY	1 cut(s)	367
BstPAI	GACNNNNGTC	1 cut(s)	400
BstSFI	CTRYAG	5 cut(s)	127, 162, 249, 353, 753
BstV1I	GCAGC	2 cut(s)	452, 767
BsuRI	GGCC	2 cut(s)	180, 438
BtsCI	GGATG	1 cut(s)	157
BtsI	GCAGTG	2 cut(s)	136, 597
BtsIMutI	CAGTG	3 cut(s)	136, 404, 597
Cac8I	GCNNGC	3 cut(s)	588, 632, 638
CaiI	CAGNNNCTG	1 cut(s)	289
CciI	TCATGA	1 cut(s)	613
CfoI	GCGC	1 cut(s)	636
Cfr13I	GGNCC	4 cut(s)	36, 64, 395, 436
Csp6I	GTAC	2 cut(s)	77, 750
CviAII	CATG	7 cut(s)	89, 364, 374, 444, 545, 562, 614
CviQI	GTAC	2 cut(s)	77, 750
DdeI	CTNAG	2 cut(s)	193, 216
DpnI	GATC	4 cut(s)	138, 234, 379, 687
DpnII	GATC	4 cut(s)	136, 232, 377, 685
Eam1104I	CTCTTC	1 cut(s)	385
EarI	CTCTTC	1 cut(s)	385
Eco47I	GGWCC	3 cut(s)	36, 64, 395
Eco47III	AGCGCT	1 cut(s)	635
Eco57I	CTGAAG	1 cut(s)	428
Eco88I	CYCGRG	2 cut(s)	276, 423
EcoO109I	RGGNCCY	2 cut(s)	36, 64
EcoRI	GAATTC	1 cut(s)	208
FaeI	CATG	7 cut(s)	92, 367, 377, 447, 548, 565, 617
FatI	CATG	7 cut(s)	88, 363, 373, 443, 544, 561, 613
FauNDI	CATATG	1 cut(s)	690
Fnu4HI	GCNGC	2 cut(s)	466, 756
FokI	GGATG	1 cut(s)	164
Fsp4HI	GCNGC	2 cut(s)	466, 756
FspBI	CTAG	2 cut(s)	24, 33
GlaI	GCGC	1 cut(s)	635
GluI	GCNGC	2 cut(s)	466, 756
GsuI	CTGGAG	1 cut(s)	625
HaeII	RGCGCY	1 cut(s)	637
HaeIII	GGCC	2 cut(s)	180, 438
HapII	CCGG	1 cut(s)	398
HhaI	GCGC	1 cut(s)	636
Hin1II	CATG	7 cut(s)	92, 367, 377, 447, 548, 565, 617
Hin6I	GCGC	1 cut(s)	634
HinP1I	GCGC	1 cut(s)	634
HinfI	GANTC	2 cut(s)	268, 401
HpaII	CCGG	1 cut(s)	398
Hpy188I	TCNGA	5 cut(s)	13, 112, 196, 232, 658
Hpy188III	TCNNGA	6 cut(s)	24, 185, 236, 265, 278, 614
HpyAV	CCTTC	7 cut(s)	55, 191, 214, 403, 455, 568, 688
HpyCH4V	TGCA	8 cut(s)	129, 251, 355, 361, 458, 468, 645, 755
HpyF10VI	GCNNNNNNNGC	4 cut(s)	321, 379, 444, 642
HpyF3I	CTNAG	2 cut(s)	193, 216
Hsp92II	CATG	7 cut(s)	92, 367, 377, 447, 548, 565, 617
HspAI	GCGC	1 cut(s)	634
Kzo9I	GATC	4 cut(s)	136, 232, 377, 685
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	7 cut(s)	198, 250, 411, 572, 589, 622, 693
Lsp1109I	GCAGC	2 cut(s)	452, 767
LweI	GCATC	1 cut(s)	348
MaeI	CTAG	2 cut(s)	24, 33
MaeIII	GTNAC	3 cut(s)	157, 244, 402
MalI	GATC	4 cut(s)	138, 234, 379, 687
MboI	GATC	4 cut(s)	136, 232, 377, 685
MboII	GAAGA	3 cut(s)	146, 402, 631
MluCI	AATT	5 cut(s)	15, 82, 122, 208, 622
MlyI	GAGTC	1 cut(s)	410
MmeI	TCCRAC	1 cut(s)	296
MnlI	CCTC	8 cut(s)	50, 142, 386, 432, 449, 666, 735, 736
MroXI	GAANNNNTTC	1 cut(s)	557
MseI	TTAA	2 cut(s)	336, 769
MslI	CAYNNNNRTG	1 cut(s)	240
MspI	CCGG	1 cut(s)	398
MwoI	GCNNNNNNNGC	4 cut(s)	321, 379, 444, 642
NdeI	CATATG	1 cut(s)	690
NdeII	GATC	4 cut(s)	136, 232, 377, 685
NlaIII	CATG	7 cut(s)	92, 367, 377, 447, 548, 565, 617
NlaIV	GGNNCC	3 cut(s)	6, 38, 66
NmuCI	GTSAC	2 cut(s)	244, 402
NspI	RCATGY	1 cut(s)	367
NspV	TTCGAA	1 cut(s)	514
PaeR7I	CTCGAG	1 cut(s)	423
PagI	TCATGA	1 cut(s)	613
PciI	ACATGT	1 cut(s)	363
PdmI	GAANNNNTTC	1 cut(s)	557
PfeI	GAWTC	1 cut(s)	268
PkrI	GCNGC	2 cut(s)	467, 757
PleI	GAGTC	1 cut(s)	409
PpsI	GAGTC	1 cut(s)	409
PpuMI	RGGWCCY	2 cut(s)	36, 64
PscI	ACATGT	1 cut(s)	363
PshAI	GACNNNNGTC	1 cut(s)	400
Psp5II	RGGWCCY	2 cut(s)	36, 64
PspN4I	GGNNCC	3 cut(s)	6, 38, 66
PspPI	GGNCC	4 cut(s)	36, 64, 395, 436
PspPPI	RGGWCCY	2 cut(s)	36, 64
PspXI	VCTCGAGB	1 cut(s)	423
PstI	CTGCAG	4 cut(s)	131, 253, 357, 757
PstNI	CAGNNNCTG	1 cut(s)	289
RsaI	GTAC	2 cut(s)	78, 751
RsaNI	GTAC	2 cut(s)	77, 750
RseI	CAYNNNNRTG	1 cut(s)	240
SaqAI	TTAA	2 cut(s)	336, 769
SatI	GCNGC	2 cut(s)	466, 756
Sau3AI	GATC	4 cut(s)	136, 232, 377, 685
Sau96I	GGNCC	4 cut(s)	36, 64, 395, 436
ScaI	AGTACT	1 cut(s)	751
SchI	GAGTC	1 cut(s)	410
SetI	ASST	4 cut(s)	100, 424, 677, 760
SfaNI	GCATC	1 cut(s)	348
SfcI	CTRYAG	5 cut(s)	127, 162, 249, 353, 753
Sfr274I	CTCGAG	1 cut(s)	423
SfuI	TTCGAA	1 cut(s)	514
SinI	GGWCC	3 cut(s)	36, 64, 395
SlaI	CTCGAG	1 cut(s)	423
SmiMI	CAYNNNNRTG	1 cut(s)	240
SmlI	CTYRAG	1 cut(s)	423
SmoI	CTYRAG	1 cut(s)	423
Sse9I	AATT	5 cut(s)	15, 82, 122, 208, 622
SsiI	CCGC	1 cut(s)	340
SspMI	CTAG	2 cut(s)	24, 33
TaqI	TCGA	5 cut(s)	212, 388, 424, 514, 568
TasI	AATT	5 cut(s)	15, 82, 122, 208, 622
TatI	WGTACW	1 cut(s)	749
TfiI	GAWTC	1 cut(s)	268
Tru1I	TTAA	2 cut(s)	336, 769
Tru9I	TTAA	2 cut(s)	336, 769
TscAI	CASTG	3 cut(s)	136, 411, 597
TseFI	GTSAC	2 cut(s)	244, 402
TseI	GCWGC	2 cut(s)	465, 755
Tsp45I	GTSAC	2 cut(s)	244, 402
TspDTI	ATGAA	5 cut(s)	9, 93, 168, 550, 707
TspRI	CASTG	3 cut(s)	136, 411, 597
VpaK11BI	GGWCC	3 cut(s)	36, 64, 395
XapI	RAATTY	3 cut(s)	15, 122, 208
XbaI	TCTAGA	1 cut(s)	23
XceI	RCATGY	1 cut(s)	367
XhoI	CTCGAG	1 cut(s)	423
XmnI	GAANNNNTTC	1 cut(s)	557
XspI	CTAG	2 cut(s)	24, 33
ZrmI	AGTACT	1 cut(s)	751

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.