AT1G35170

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0007728
Physical Location & Seq
Reverse (-)
12870563 .. 12872257
1695 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G35170.4

Sequence Viewer

Length: 690 bp
ATGGAGGAAGAATACATAAGAATAATAAGCATAACAACAATAAGAATAATCTCATGGGGTCTCATTTTCATCCTTGTAAGACGAATCTTCTCAAGCTACTCGTTCGACTTCAGCACCCGTATAGTCTCAACGCTTCACGCAACAATCGCTGTCACTTTAGCAACTCTCTCGATTCAAGATTGGTCTTGTCCTGTTTGTCCCATTGCTTCTACATCGTCTCTCCGGCAGATGGAAACGTTGGCGTTTTCATTGTCGTACATGATCTACGATCTCATTTGTAGCCACTTTGATCAAGTCCTTAGCATTGATAATGCGGTTCATCATTCTGTTTGCATTCTTGGTTTTGTAGCTGGACTTTTCTACCAAAAGTGTGGATCCGAGATGGTGGCAGCAATATGGATAACAGAGATCTCAAGTCCGTTTCTTCACCTCAGGGAGATTCTTAAAGAGATTGGTTGTAGAGACACCGACCTAAATCTTGCAGCCGATGTGTTTTTTGCAACAATTTTCTCGGTGGCCCGAATGGTGGGTGGACCTTACCTAGTTTACGTAACAATACCAGCTGATAATCCCATCCTCATCAAGGTAATGGGGTTGGGATTACAACTTGTGAGCGCGTTCTATAAATTACTCAAAATGATGAGATACAAATTTATTAAACGATCAATGTCCACCAAAAAATCGACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TRAM_LAG1_CLN8

Protein Analysis

229

Amino Acids

25.84

Weight (kDa)

8.51

Isoelectric Point (pI)

43.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TRAM_LAG1_CLN8 PF03798 36 - 190 5.9e-16 TLC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 617
AciI CCGC 1 cut(s) 314
AclI AACGTT 1 cut(s) 236
AclWI GGATC 2 cut(s) 369, 382
AcsI RAATTY 1 cut(s) 650
AcuI CTGAAG 1 cut(s) 94
AfaI GTAC 1 cut(s) 257
AfiI CCNNNNNNNGG 3 cut(s) 229, 526, 583
AgsI TTSAA 1 cut(s) 176
AluBI AGCT 3 cut(s) 96, 350, 563
AluI AGCT 3 cut(s) 96, 350, 563
Alw26I GTCTC 4 cut(s) 65, 130, 222, 456
AlwI GGATC 2 cut(s) 369, 382
AoxI GGCC 1 cut(s) 516
ApeKI GCWGC 2 cut(s) 389, 482
ApoI RAATTY 1 cut(s) 650
AspLEI GCGC 1 cut(s) 617
AspS9I GGNCC 2 cut(s) 517, 533
AsuHPI GGTGA 1 cut(s) 419
AvaII GGWCC 1 cut(s) 533
AxyI CCTNAGG 1 cut(s) 431
BamHI GGATCC 1 cut(s) 374
BbvI GCAGC 2 cut(s) 401, 494
BccI CCATC 3 cut(s) 223, 376, 581
BcgI CGANNNNNNTGC 2 cut(s) 150, 184
BclI TGATCA 1 cut(s) 289
BcoDI GTCTC 4 cut(s) 65, 130, 222, 456
BfaI CTAG 1 cut(s) 542
BglII AGATCT 1 cut(s) 408
BisI GCNGC 2 cut(s) 390, 483
BlsI GCNGC 2 cut(s) 391, 484
Bme18I GGWCC 1 cut(s) 533
BmgT120I GGNCC 2 cut(s) 517, 533
BmiI GGNNCC 1 cut(s) 376
Bpu10I CCTNAGC 1 cut(s) 299
BpuEI CTTGAG 2 cut(s) 76, 397
BsaAI YACGTR 1 cut(s) 550
BsaI GGTCTC 1 cut(s) 65
Bsc4I CCNNNNNNNGG 3 cut(s) 229, 526, 583
Bse21I CCTNAGG 1 cut(s) 431
Bse3DI GCAATG 1 cut(s) 201
BseGI GGATG 2 cut(s) 69, 573
BseLI CCNNNNNNNGG 3 cut(s) 229, 526, 583
BseMI GCAATG 1 cut(s) 201
BseMII CTCAG 1 cut(s) 445
BseXI GCAGC 2 cut(s) 401, 494
Bsh1236I CGCG 1 cut(s) 617
BshFI GGCC 1 cut(s) 518
BsiSI CCGG 1 cut(s) 223
BslFI GGGAC 1 cut(s) 183
BslI CCNNNNNNNGG 3 cut(s) 229, 526, 583
BsmAI GTCTC 4 cut(s) 65, 130, 222, 456
BsmBI CGTCTC 1 cut(s) 222
BsmFI GGGAC 1 cut(s) 183
BsmI GAATGC 1 cut(s) 333
BsnI GGCC 1 cut(s) 518
Bso31I GGTCTC 1 cut(s) 65
Bsp143I GATC 6 cut(s) 261, 268, 289, 374, 408, 662
BspACI CCGC 1 cut(s) 314
BspANI GGCC 1 cut(s) 518
BspCNI CTCAG 1 cut(s) 444
BspFNI CGCG 1 cut(s) 617
BspLI GGNNCC 1 cut(s) 376
BspPI GGATC 2 cut(s) 369, 382
BspTNI GGTCTC 1 cut(s) 65
BsrDI GCAATG 1 cut(s) 201
BssMI GATC 6 cut(s) 261, 268, 289, 374, 408, 662
BstBAI YACGTR 1 cut(s) 550
BstDEI CTNAG 2 cut(s) 299, 431
BstENI CCTNNNNNAGG 1 cut(s) 581
BstF5I GGATG 2 cut(s) 69, 573
BstFNI CGCG 1 cut(s) 617
BstHHI GCGC 1 cut(s) 617
BstKTI GATC 6 cut(s) 264, 271, 292, 377, 411, 665
BstMAI GTCTC 4 cut(s) 65, 130, 222, 456
BstMBI GATC 6 cut(s) 261, 268, 289, 374, 408, 662
BstMWI GCNNNNNNNGC 1 cut(s) 146
BstSNI TACGTA 1 cut(s) 550
BstUI CGCG 1 cut(s) 617
BstV1I GCAGC 2 cut(s) 401, 494
BstX2I RGATCY 2 cut(s) 374, 408
BstXI CCANNNNNNTGG 1 cut(s) 371
BstYI RGATCY 2 cut(s) 374, 408
Bsu36I CCTNAGG 1 cut(s) 431
BsuRI GGCC 1 cut(s) 518
BtsCI GGATG 2 cut(s) 69, 573
CfoI GCGC 1 cut(s) 617
Cfr13I GGNCC 2 cut(s) 517, 533
Csp6I GTAC 1 cut(s) 256
CviAII CATG 2 cut(s) 54, 259
CviJI RGCY 6 cut(s) 96, 282, 350, 485, 518, 563
CviKI_1 RGCY 6 cut(s) 96, 282, 350, 485, 518, 563
CviQI GTAC 1 cut(s) 256
DdeI CTNAG 2 cut(s) 299, 431
DpnI GATC 6 cut(s) 263, 270, 291, 376, 410, 664
DpnII GATC 6 cut(s) 261, 268, 289, 374, 408, 662
Eco105I TACGTA 1 cut(s) 550
Eco31I GGTCTC 1 cut(s) 65
Eco47I GGWCC 1 cut(s) 533
Eco57I CTGAAG 1 cut(s) 94
Eco81I CCTNAGG 1 cut(s) 431
EcoNI CCTNNNNNAGG 1 cut(s) 581
Esp3I CGTCTC 1 cut(s) 222
FaeI CATG 2 cut(s) 57, 262
FaiI YATR 7 cut(s) 17, 32, 55, 122, 260, 397, 624
FaqI GGGAC 1 cut(s) 183
FatI CATG 2 cut(s) 53, 258
FbaI TGATCA 1 cut(s) 289
Fnu4HI GCNGC 2 cut(s) 390, 483
FokI GGATG 2 cut(s) 56, 560
Fsp4HI GCNGC 2 cut(s) 390, 483
FspBI CTAG 1 cut(s) 542
GlaI GCGC 1 cut(s) 616
GluI GCNGC 2 cut(s) 390, 483
HaeIII GGCC 1 cut(s) 518
HapII CCGG 1 cut(s) 223
HhaI GCGC 1 cut(s) 617
Hin1II CATG 2 cut(s) 57, 262
Hin6I GCGC 1 cut(s) 615
HinP1I GCGC 1 cut(s) 615
HinfI GANTC 3 cut(s) 84, 172, 439
HpaII CCGG 1 cut(s) 223
HphI GGTGA 1 cut(s) 419
Hpy166II GTNNAC 3 cut(s) 533, 547, 672
Hpy188I TCNGA 1 cut(s) 379
Hpy188III TCNNGA 2 cut(s) 169, 176
Hpy8I GTNNAC 3 cut(s) 533, 547, 672
Hpy99I CGWCG 1 cut(s) 688
HpyCH4IV ACGT 3 cut(s) 236, 549, 686
HpyCH4V TGCA 3 cut(s) 333, 482, 500
HpyF10VI GCNNNNNNNGC 1 cut(s) 146
HpyF3I CTNAG 2 cut(s) 299, 431
HpySE526I ACGT 3 cut(s) 236, 549, 686
Hsp92II CATG 2 cut(s) 57, 262
HspAI GCGC 1 cut(s) 615
Ksp22I TGATCA 1 cut(s) 289
Kzo9I GATC 6 cut(s) 261, 268, 289, 374, 408, 662
LpnPI CCDG 5 cut(s) 204, 236, 336, 418, 573
Lsp1109I GCAGC 2 cut(s) 401, 494
MaeI CTAG 1 cut(s) 542
MaeII ACGT 3 cut(s) 236, 549, 686
MaeIII GTNAC 2 cut(s) 151, 550
MalI GATC 6 cut(s) 263, 270, 291, 376, 410, 664
MboI GATC 6 cut(s) 261, 268, 289, 374, 408, 662
MboII GAAGA 3 cut(s) 20, 79, 416
MflI RGATCY 2 cut(s) 374, 408
MluCI AATT 3 cut(s) 504, 626, 650
MnlI CCTC 2 cut(s) 440, 587
MseI TTAA 2 cut(s) 444, 657
MspA1I CMGCKG 1 cut(s) 563
MspI CCGG 1 cut(s) 223
Mva1269I GAATGC 1 cut(s) 333
MvnI CGCG 1 cut(s) 617
MwoI GCNNNNNNNGC 1 cut(s) 146
NdeII GATC 6 cut(s) 261, 268, 289, 374, 408, 662
NlaIII CATG 2 cut(s) 57, 262
NlaIV GGNNCC 1 cut(s) 376
NmuCI GTSAC 1 cut(s) 151
PctI GAATGC 1 cut(s) 333
PfeI GAWTC 3 cut(s) 84, 172, 439
PkrI GCNGC 2 cut(s) 391, 484
Ppu21I YACGTR 1 cut(s) 550
Psp1406I AACGTT 1 cut(s) 236
PspN4I GGNNCC 1 cut(s) 376
PspPI GGNCC 2 cut(s) 517, 533
PsuI RGATCY 2 cut(s) 374, 408
PvuII CAGCTG 1 cut(s) 563
RsaI GTAC 1 cut(s) 257
RsaNI GTAC 1 cut(s) 256
SaqAI TTAA 2 cut(s) 444, 657
SatI GCNGC 2 cut(s) 390, 483
Sau3AI GATC 6 cut(s) 261, 268, 289, 374, 408, 662
Sau96I GGNCC 2 cut(s) 517, 533
SinI GGWCC 1 cut(s) 533
SmlI CTYRAG 2 cut(s) 91, 412
SmoI CTYRAG 2 cut(s) 91, 412
SnaBI TACGTA 1 cut(s) 550
Sse9I AATT 3 cut(s) 504, 626, 650
SsiI CCGC 1 cut(s) 314
SspMI CTAG 1 cut(s) 542
TaiI ACGT 3 cut(s) 239, 552, 689
TaqI TCGA 3 cut(s) 105, 170, 683
TasI AATT 3 cut(s) 504, 626, 650
TfiI GAWTC 3 cut(s) 84, 172, 439
Tru1I TTAA 2 cut(s) 444, 657
Tru9I TTAA 2 cut(s) 444, 657
TseFI GTSAC 1 cut(s) 151
TseI GCWGC 2 cut(s) 389, 482
Tsp45I GTSAC 1 cut(s) 151
TspDTI ATGAA 3 cut(s) 58, 237, 308
TspGWI ACGGA 1 cut(s) 408
VpaK11BI GGWCC 1 cut(s) 533
XagI CCTNNNNNAGG 1 cut(s) 581
XapI RAATTY 1 cut(s) 650
XspI CTAG 1 cut(s) 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.