Rh6CG433900

Transmembrane protein 136

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0007728
Physical Location & Seq
Forward (+)
61409934 .. 61411793
1860 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG433900.1

Sequence Viewer

Length: 504 bp
ATGGTGGAGCAGATGAAAGCACTAGCAGTGAGCCTTTCTTATCTCATCTATGATCTCATCTGTTGCCTTTTTGACAAGCAATTCAGTCTTGACAATTTCTTCCACCATTTGGTTAGCATTATTGGAATTGTAGCAGGCCTTGCATACCAAAGGTGTGGGTCAGAGATGGTAGCAGCATTGTGGATAACAGAGGTCTCTAGCCCTTTCCTCCACTTGAGGGAGATTCTCAAAGAGCTTGGTTACAAGGACACCGACCTAAACTTAGCAGCAGATATTTCATTTGCAGCTATATTCTCGGTTGCAAGGATGGGAGGCGGACCTTATCTCACTTATGTAACACTATCTGCTCACAATCCTTTCATCATTAAGGGAATGGCAGTGGGACTGCAGCTGGTCAGTACTTTCTGGTTCTACAAGATAGCGAGAATGGTGATGTACAAATTGACCAAGAGGACTACTAGTGCAATGAAGGAGGCTGACATCAACCATAAAAGAGAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TRAM_LAG1_CLN8

Protein Analysis

167

Amino Acids

18.84

Weight (kDa)

8.41

Isoelectric Point (pI)

34.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TRAM_LAG1_CLN8 PF03798 4 - 142 2.9e-21 TLC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 109
AciI CCGC 1 cut(s) 315
AfaI GTAC 2 cut(s) 400, 437
AfiI CCNNNNNNNGG 2 cut(s) 109, 217
AhlI ACTAGT 1 cut(s) 458
AluBI AGCT 3 cut(s) 235, 287, 391
AluI AGCT 3 cut(s) 235, 287, 391
Alw26I GTCTC 1 cut(s) 199
AoxI GGCC 1 cut(s) 136
ApeKI GCWGC 4 cut(s) 173, 266, 284, 388
AspS9I GGNCC 1 cut(s) 317
AsuHPI GGTGA 1 cut(s) 442
AvaII GGWCC 1 cut(s) 317
BbvI GCAGC 4 cut(s) 185, 278, 296, 400
BccI CCATC 2 cut(s) 160, 301
BcoDI GTCTC 1 cut(s) 199
BcuI ACTAGT 1 cut(s) 458
BfaI CTAG 3 cut(s) 23, 198, 459
BfmI CTRYAG 1 cut(s) 386
BisI GCNGC 4 cut(s) 174, 267, 285, 389
BlsI GCNGC 4 cut(s) 175, 268, 286, 390
BmcAI AGTACT 1 cut(s) 400
Bme18I GGWCC 1 cut(s) 317
BmgT120I GGNCC 1 cut(s) 317
BpuEI CTTGAG 1 cut(s) 235
BsaI GGTCTC 1 cut(s) 199
Bsc4I CCNNNNNNNGG 2 cut(s) 109, 217
Bse3DI GCAATG 1 cut(s) 471
BseGI GGATG 1 cut(s) 312
BseLI CCNNNNNNNGG 2 cut(s) 109, 217
BseMI GCAATG 1 cut(s) 471
BseXI GCAGC 4 cut(s) 185, 278, 296, 400
BshFI GGCC 1 cut(s) 138
BslFI GGGAC 1 cut(s) 396
BslI CCNNNNNNNGG 2 cut(s) 109, 217
BsmAI GTCTC 1 cut(s) 199
BsmFI GGGAC 1 cut(s) 396
BsnI GGCC 1 cut(s) 138
Bso31I GGTCTC 1 cut(s) 199
Bsp1407I TGTACA 1 cut(s) 435
Bsp143I GATC 1 cut(s) 52
BspACI CCGC 1 cut(s) 315
BspANI GGCC 1 cut(s) 138
BspMAI CTGCAG 1 cut(s) 390
BspTNI GGTCTC 1 cut(s) 199
BsrDI GCAATG 1 cut(s) 471
BsrGI TGTACA 1 cut(s) 435
BssMI GATC 1 cut(s) 52
BstAPI GCANNNNNTGC 1 cut(s) 140
BstAUI TGTACA 1 cut(s) 435
BstC8I GCNNGC 1 cut(s) 136
BstDEI CTNAG 1 cut(s) 262
BstF5I GGATG 1 cut(s) 312
BstKTI GATC 1 cut(s) 55
BstMAI GTCTC 1 cut(s) 199
BstMBI GATC 1 cut(s) 52
BstMWI GCNNNNNNNGC 1 cut(s) 140
BstSFI CTRYAG 1 cut(s) 386
BstV1I GCAGC 4 cut(s) 185, 278, 296, 400
BstXI CCANNNNNNTGG 1 cut(s) 155
BsuRI GGCC 1 cut(s) 138
BtsCI GGATG 1 cut(s) 312
BtsI GCAGTG 2 cut(s) 33, 384
BtsIMutI CAGTG 2 cut(s) 33, 384
Cac8I GCNNGC 1 cut(s) 136
Cfr13I GGNCC 1 cut(s) 317
Csp6I GTAC 2 cut(s) 399, 436
CviJI RGCY 7 cut(s) 33, 138, 201, 235, 287, 391, 476
CviKI_1 RGCY 7 cut(s) 33, 138, 201, 235, 287, 391, 476
CviQI GTAC 2 cut(s) 399, 436
DdeI CTNAG 1 cut(s) 262
DpnI GATC 1 cut(s) 54
DpnII GATC 1 cut(s) 52
EciI GGCGGA 1 cut(s) 330
Eco147I AGGCCT 1 cut(s) 138
Eco31I GGTCTC 1 cut(s) 199
Eco47I GGWCC 1 cut(s) 317
FaiI YATR 5 cut(s) 51, 145, 290, 333, 489
FaqI GGGAC 1 cut(s) 396
Fnu4HI GCNGC 4 cut(s) 174, 267, 285, 389
FokI GGATG 1 cut(s) 319
Fsp4HI GCNGC 4 cut(s) 174, 267, 285, 389
FspBI CTAG 3 cut(s) 23, 198, 459
GluI GCNGC 4 cut(s) 174, 267, 285, 389
HaeIII GGCC 1 cut(s) 138
HinfI GANTC 1 cut(s) 223
HphI GGTGA 1 cut(s) 442
Hpy188I TCNGA 1 cut(s) 163
Hpy188III TCNNGA 1 cut(s) 89
HpyAV CCTTC 1 cut(s) 463
HpyCH4V TGCA 5 cut(s) 143, 284, 302, 388, 464
HpyF10VI GCNNNNNNNGC 1 cut(s) 140
HpyF3I CTNAG 1 cut(s) 262
Kzo9I GATC 1 cut(s) 52
LmnI GCTCC 1 cut(s) 7
LpnPI CCDG 3 cut(s) 120, 377, 391
Lsp1109I GCAGC 4 cut(s) 185, 278, 296, 400
MaeI CTAG 3 cut(s) 23, 198, 459
MaeIII GTNAC 2 cut(s) 239, 334
MalI GATC 1 cut(s) 54
MboI GATC 1 cut(s) 52
MboII GAAGA 1 cut(s) 91
MluCI AATT 5 cut(s) 80, 94, 126, 440, 499
MnlI CCTC 6 cut(s) 184, 210, 218, 305, 444, 466
MseI TTAA 1 cut(s) 366
MspA1I CMGCKG 1 cut(s) 391
MwoI GCNNNNNNNGC 1 cut(s) 140
NdeII GATC 1 cut(s) 52
PceI AGGCCT 1 cut(s) 138
PfeI GAWTC 1 cut(s) 223
PflMI CCANNNNNTGG 1 cut(s) 109
PkrI GCNGC 4 cut(s) 175, 268, 286, 390
PspPI GGNCC 1 cut(s) 317
PstI CTGCAG 1 cut(s) 390
PvuII CAGCTG 1 cut(s) 391
RsaI GTAC 2 cut(s) 400, 437
RsaNI GTAC 2 cut(s) 399, 436
SaqAI TTAA 1 cut(s) 366
SatI GCNGC 4 cut(s) 174, 267, 285, 389
Sau3AI GATC 1 cut(s) 52
Sau96I GGNCC 1 cut(s) 317
ScaI AGTACT 1 cut(s) 400
SetI ASST 7 cut(s) 155, 195, 237, 258, 289, 322, 393
SfcI CTRYAG 1 cut(s) 386
SinI GGWCC 1 cut(s) 317
SmlI CTYRAG 1 cut(s) 214
SmoI CTYRAG 1 cut(s) 214
SpeI ACTAGT 1 cut(s) 458
Sse9I AATT 5 cut(s) 80, 94, 126, 440, 499
SseBI AGGCCT 1 cut(s) 138
SsiI CCGC 1 cut(s) 315
SspMI CTAG 3 cut(s) 23, 198, 459
StuI AGGCCT 1 cut(s) 138
TasI AATT 5 cut(s) 80, 94, 126, 440, 499
TatI WGTACW 2 cut(s) 398, 435
TfiI GAWTC 1 cut(s) 223
Tru1I TTAA 1 cut(s) 366
Tru9I TTAA 1 cut(s) 366
TscAI CASTG 2 cut(s) 33, 384
TseI GCWGC 4 cut(s) 173, 266, 284, 388
TspDTI ATGAA 4 cut(s) 29, 267, 349, 482
TspRI CASTG 2 cut(s) 33, 384
Van91I CCANNNNNTGG 1 cut(s) 109
VpaK11BI GGWCC 1 cut(s) 317
XspI CTAG 3 cut(s) 23, 198, 459
ZrmI AGTACT 1 cut(s) 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.