Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007728

Physical Location & Seq

Genomic Coordinates Reverse (-)

12877107 .. 12878835

Gene Structure 1729 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G35180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGAGGAAGAATACGTAAGAGTAATAAGCATAACAACAATAGGAGTAATCTCATGGGGTCTCATTTTCATCCTTGTAAGACGAATCTTCTCAAGCTACTCGTTCGACTTCAGCACCCGTATAGTCTCAACGCTTCACGCAACAATCGCTGTCACTTTAGCAACTCTCTCGATTCAAGATTGGTCTTGTCCTGTTTGTCCCATTGCTTCTACATCGTCTCTCCGGCAGATGGAAACGTTGGCGTTTTCATTGTCGTACATGATCTACGATCTCATTTGTAGCCACTTTGATCAAGTCCTTAGCATTGATAATGCGGTTCATCATTCTGTTTGCATTCTTGGTTTTGTAGCTGGACTTTTCTACCAAAAGTGTGGATCCGAGATGGTGGCAGCACTTTGGATAACAGAGATCTCAAGTCCGTTTCTTCACCTCAGGGAGATTCTTAAAGAGATTGGTTATAGAGACACCGACCTAAATCTTGCAGCCGATGTGTGTTTTGCAACAATTTTCTCGTTGGCCAGAATGGTGGGTGGACCTTACCTAGTTTACGTAACAATATCAGCCGATAATCCCATTCTCATCAAGGCAATGGCGTTGGGGTTACAACTTGTGAGCGCATTCTGGTTCTATAAAATCCTCAAAATGATGAGATACAAATTTATCAAAAGATCAATGTCCAACAAAAAATCGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TRAM_LAG1_CLN8

Protein Analysis

231

Amino Acids

26.02

Weight (kDa)

8.19

Isoelectric Point (pI)

45.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRAM_LAG1_CLN8	PF03798	36 - 214	8.2e-21	TLC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007728)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35170 AT1G35170 AT1G35170 AT1G35170 AT1G35180 AT1G45010 AT1G45010 AT1G45010 AT1G45010
fragaria_vesca	FvH4_2g39310 FvH4_2g39310
malus_domestica	MD08G1024400.v1.1
prunus_persica	Prupe.1G374200_v2.0.a1
pyrus_communis	pycom08g01940
rosa_chinensis	RchiOBHm_Chr6g0301691
rosa_laevigata	RLG00000011231
rosa_multiflora	Rmu_sc0005517.1_g000001 Rmu_sc0034934.1_g000004
rosa_roxburghii	Rroxscaffold_7G00166510
rosa_rugosa	Rorug06G0308100
rosa_samantha	Rh6BG427300 Rh6CG433900 Rh6DG420800
rosa_wichuraiana	Rw6G036400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	314
AclI	AACGTT	1 cut(s)	236
AclWI	GGATC	2 cut(s)	369, 382
AcoI	YGGCCR	1 cut(s)	516
AcsI	RAATTY	1 cut(s)	656
AcuI	CTGAAG	1 cut(s)	94
AfaI	GTAC	1 cut(s)	257
AfiI	CCNNNNNNNGG	1 cut(s)	229
AgsI	TTSAA	1 cut(s)	176
AluBI	AGCT	2 cut(s)	96, 350
AluI	AGCT	2 cut(s)	96, 350
Alw26I	GTCTC	4 cut(s)	65, 130, 222, 456
AlwI	GGATC	2 cut(s)	369, 382
AoxI	GGCC	1 cut(s)	516
ApeKI	GCWGC	2 cut(s)	389, 482
ApoI	RAATTY	1 cut(s)	656
AspLEI	GCGC	1 cut(s)	617
AspS9I	GGNCC	1 cut(s)	533
AsuHPI	GGTGA	1 cut(s)	419
AvaII	GGWCC	1 cut(s)	533
AxyI	CCTNAGG	1 cut(s)	431
BalI	TGGCCA	1 cut(s)	518
BamHI	GGATCC	1 cut(s)	374
BbvI	GCAGC	2 cut(s)	401, 494
BccI	CCATC	2 cut(s)	223, 376
BcgI	CGANNNNNNTGC	2 cut(s)	150, 184
BclI	TGATCA	1 cut(s)	289
BcoDI	GTCTC	4 cut(s)	65, 130, 222, 456
BfaI	CTAG	1 cut(s)	542
BglII	AGATCT	1 cut(s)	408
BisI	GCNGC	2 cut(s)	390, 483
BlsI	GCNGC	2 cut(s)	391, 484
Bme18I	GGWCC	1 cut(s)	533
BmgT120I	GGNCC	1 cut(s)	533
BmiI	GGNNCC	1 cut(s)	376
Bpu10I	CCTNAGC	1 cut(s)	299
BpuEI	CTTGAG	2 cut(s)	76, 397
BsaAI	YACGTR	2 cut(s)	16, 550
BsaI	GGTCTC	1 cut(s)	65
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse21I	CCTNAGG	1 cut(s)	431
Bse3DI	GCAATG	2 cut(s)	201, 594
BseGI	GGATG	1 cut(s)	69
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseMI	GCAATG	2 cut(s)	201, 594
BseMII	CTCAG	1 cut(s)	445
BseXI	GCAGC	2 cut(s)	401, 494
BshFI	GGCC	1 cut(s)	518
BsiSI	CCGG	1 cut(s)	223
BslFI	GGGAC	1 cut(s)	183
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmAI	GTCTC	4 cut(s)	65, 130, 222, 456
BsmBI	CGTCTC	1 cut(s)	222
BsmFI	GGGAC	1 cut(s)	183
BsmI	GAATGC	2 cut(s)	333, 617
BsnI	GGCC	1 cut(s)	518
Bso31I	GGTCTC	1 cut(s)	65
Bsp143I	GATC	6 cut(s)	261, 268, 289, 374, 408, 668
BspACI	CCGC	1 cut(s)	314
BspANI	GGCC	1 cut(s)	518
BspCNI	CTCAG	1 cut(s)	444
BspLI	GGNNCC	1 cut(s)	376
BspPI	GGATC	2 cut(s)	369, 382
BspTNI	GGTCTC	1 cut(s)	65
BsrDI	GCAATG	2 cut(s)	201, 594
BssMI	GATC	6 cut(s)	261, 268, 289, 374, 408, 668
BstBAI	YACGTR	2 cut(s)	16, 550
BstDEI	CTNAG	3 cut(s)	299, 431, 693
BstF5I	GGATG	1 cut(s)	69
BstHHI	GCGC	1 cut(s)	617
BstKTI	GATC	6 cut(s)	264, 271, 292, 377, 411, 671
BstMAI	GTCTC	4 cut(s)	65, 130, 222, 456
BstMBI	GATC	6 cut(s)	261, 268, 289, 374, 408, 668
BstMWI	GCNNNNNNNGC	1 cut(s)	146
BstSNI	TACGTA	2 cut(s)	16, 550
BstV1I	GCAGC	2 cut(s)	401, 494
BstX2I	RGATCY	2 cut(s)	374, 408
BstXI	CCANNNNNNTGG	2 cut(s)	371, 526
BstYI	RGATCY	2 cut(s)	374, 408
Bsu36I	CCTNAGG	1 cut(s)	431
BsuRI	GGCC	1 cut(s)	518
BtsCI	GGATG	1 cut(s)	69
CfoI	GCGC	1 cut(s)	617
Cfr13I	GGNCC	1 cut(s)	533
Csp6I	GTAC	1 cut(s)	256
CviAII	CATG	2 cut(s)	54, 259
CviJI	RGCY	7 cut(s)	96, 282, 350, 485, 518, 563, 692
CviKI_1	RGCY	7 cut(s)	96, 282, 350, 485, 518, 563, 692
CviQI	GTAC	1 cut(s)	256
DdeI	CTNAG	3 cut(s)	299, 431, 693
DpnI	GATC	6 cut(s)	263, 270, 291, 376, 410, 670
DpnII	GATC	6 cut(s)	261, 268, 289, 374, 408, 668
EaeI	YGGCCR	1 cut(s)	516
Eco105I	TACGTA	2 cut(s)	16, 550
Eco31I	GGTCTC	1 cut(s)	65
Eco47I	GGWCC	1 cut(s)	533
Eco57I	CTGAAG	1 cut(s)	94
Eco81I	CCTNAGG	1 cut(s)	431
Esp3I	CGTCTC	1 cut(s)	222
FaeI	CATG	2 cut(s)	57, 262
FaiI	YATR	6 cut(s)	32, 55, 122, 260, 459, 630
FaqI	GGGAC	1 cut(s)	183
FatI	CATG	2 cut(s)	53, 258
FbaI	TGATCA	1 cut(s)	289
Fnu4HI	GCNGC	2 cut(s)	390, 483
FokI	GGATG	1 cut(s)	56
Fsp4HI	GCNGC	2 cut(s)	390, 483
FspBI	CTAG	1 cut(s)	542
GlaI	GCGC	1 cut(s)	616
GluI	GCNGC	2 cut(s)	390, 483
HaeIII	GGCC	1 cut(s)	518
HapII	CCGG	1 cut(s)	223
HhaI	GCGC	1 cut(s)	617
Hin1II	CATG	2 cut(s)	57, 262
Hin6I	GCGC	1 cut(s)	615
HinP1I	GCGC	1 cut(s)	615
HinfI	GANTC	3 cut(s)	84, 172, 439
HpaII	CCGG	1 cut(s)	223
HphI	GGTGA	1 cut(s)	419
Hpy166II	GTNNAC	2 cut(s)	533, 547
Hpy188I	TCNGA	1 cut(s)	379
Hpy188III	TCNNGA	2 cut(s)	169, 176
Hpy8I	GTNNAC	2 cut(s)	533, 547
HpyCH4IV	ACGT	3 cut(s)	15, 236, 549
HpyCH4V	TGCA	3 cut(s)	333, 482, 500
HpyF10VI	GCNNNNNNNGC	1 cut(s)	146
HpyF3I	CTNAG	3 cut(s)	299, 431, 693
HpySE526I	ACGT	3 cut(s)	15, 236, 549
Hsp92II	CATG	2 cut(s)	57, 262
HspAI	GCGC	1 cut(s)	615
Ksp22I	TGATCA	1 cut(s)	289
Kzo9I	GATC	6 cut(s)	261, 268, 289, 374, 408, 668
LpnPI	CCDG	6 cut(s)	204, 236, 336, 418, 532, 607
Lsp1109I	GCAGC	2 cut(s)	401, 494
MaeI	CTAG	1 cut(s)	542
MaeII	ACGT	3 cut(s)	15, 236, 549
MaeIII	GTNAC	3 cut(s)	151, 550, 600
MalI	GATC	6 cut(s)	263, 270, 291, 376, 410, 670
MboI	GATC	6 cut(s)	261, 268, 289, 374, 408, 668
MboII	GAAGA	3 cut(s)	20, 79, 416
MflI	RGATCY	2 cut(s)	374, 408
MlsI	TGGCCA	1 cut(s)	518
MluCI	AATT	2 cut(s)	504, 656
MluNI	TGGCCA	1 cut(s)	518
MnlI	CCTC	2 cut(s)	440, 647
Mox20I	TGGCCA	1 cut(s)	518
MscI	TGGCCA	1 cut(s)	518
MseI	TTAA	1 cut(s)	444
Msp20I	TGGCCA	1 cut(s)	518
MspI	CCGG	1 cut(s)	223
Mva1269I	GAATGC	2 cut(s)	333, 617
MwoI	GCNNNNNNNGC	1 cut(s)	146
NdeII	GATC	6 cut(s)	261, 268, 289, 374, 408, 668
NlaIII	CATG	2 cut(s)	57, 262
NlaIV	GGNNCC	1 cut(s)	376
NmuCI	GTSAC	1 cut(s)	151
PctI	GAATGC	2 cut(s)	333, 617
PfeI	GAWTC	3 cut(s)	84, 172, 439
PkrI	GCNGC	2 cut(s)	391, 484
Ppu21I	YACGTR	2 cut(s)	16, 550
Psp1406I	AACGTT	1 cut(s)	236
PspN4I	GGNNCC	1 cut(s)	376
PspPI	GGNCC	1 cut(s)	533
PsuI	RGATCY	2 cut(s)	374, 408
RsaI	GTAC	1 cut(s)	257
RsaNI	GTAC	1 cut(s)	256
SaqAI	TTAA	1 cut(s)	444
SatI	GCNGC	2 cut(s)	390, 483
Sau3AI	GATC	6 cut(s)	261, 268, 289, 374, 408, 668
Sau96I	GGNCC	1 cut(s)	533
SetI	ASST	9 cut(s)	18, 98, 239, 352, 432, 474, 538, 543, 552
SinI	GGWCC	1 cut(s)	533
SmlI	CTYRAG	2 cut(s)	91, 412
SmoI	CTYRAG	2 cut(s)	91, 412
SnaBI	TACGTA	2 cut(s)	16, 550
Sse9I	AATT	2 cut(s)	504, 656
SsiI	CCGC	1 cut(s)	314
SspMI	CTAG	1 cut(s)	542
TaiI	ACGT	3 cut(s)	18, 239, 552
TaqI	TCGA	2 cut(s)	105, 170
TasI	AATT	2 cut(s)	504, 656
TfiI	GAWTC	3 cut(s)	84, 172, 439
Tru1I	TTAA	1 cut(s)	444
Tru9I	TTAA	1 cut(s)	444
TseFI	GTSAC	1 cut(s)	151
TseI	GCWGC	2 cut(s)	389, 482
Tsp45I	GTSAC	1 cut(s)	151
TspDTI	ATGAA	3 cut(s)	58, 237, 308
TspGWI	ACGGA	1 cut(s)	408
VpaK11BI	GGWCC	1 cut(s)	533
XapI	RAATTY	1 cut(s)	656
XspI	CTAG	1 cut(s)	542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.