Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0007728

Physical Location & Seq

Genomic Coordinates Reverse (-)

1425408 .. 1427598

Gene Structure 2191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g01940.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGAGGAGCAAATTGCAAGTGTGGTGGTGCTGGGGGTGATTTCATGGACTACGGCGTTTCTGTTCATACGAAAGATGCTTCCGAAGCGATCGTTCGACTTCTGCAACCGCCTTGTATCCACAGTTCATGCAACCGTGGCTGTGACCTTAGCTTCCCTCTCTGTTCAAGATTGGAACTGTCCTGTGTGCCCTCTGGCTTCAACTTCTTCTCCTCGTCAGTTGAAAGCACAGTCTGTGAGCCTTTCTTATCTCATATACGATCTCGTGTGTTGCCTCTTTGACAAGAAATTCAATCCTGATAATTTCTTCCACCATTTGGTCAGCATTGTTGGCATTGGAGCAGGCCTTTCCTACCAAAAGTGTGGGTCGGAGATGGTGGCAGCATTGTGGATAACAGAGTTGTCCAGCCCCTTCCTCCATACAAGGGAGCTTCTCAAAGAGCTTGGTTACAGAGACACCGATCTATACCTAGCAGCCGATGTAATTATATTCACGGTTGCAAGGATGGTAGGCGGGCCTTATCTCACCTACGTGACTCTGTCTGCTAACAACCCATTCATCATCAAGGCGATGGCGGCAGGGTTGCAGCTGGTGAGCGCTTTCTGGTTCTACAAGATTGCGAGGATGGTCAAGTACAAATTGACCAAGAGGACGACCACTGCTGCTGCATCTAGGAAACAAGTCGATCCCCCCCCAACCCATAAACACACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TRAM_LAG1_CLN8

Protein Analysis

238

Amino Acids

26.42

Weight (kDa)

9.32

Isoelectric Point (pI)

35.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007728)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35170 AT1G35170 AT1G35170 AT1G35170 AT1G35180 AT1G45010 AT1G45010 AT1G45010 AT1G45010
fragaria_vesca	FvH4_2g39310 FvH4_2g39310
malus_domestica	MD08G1024400.v1.1
prunus_persica	Prupe.1G374200_v2.0.a1
pyrus_communis	pycom08g01940
rosa_chinensis	RchiOBHm_Chr6g0301691
rosa_laevigata	RLG00000011231
rosa_multiflora	Rmu_sc0005517.1_g000001 Rmu_sc0034934.1_g000004
rosa_roxburghii	Rroxscaffold_7G00166510
rosa_rugosa	Rorug06G0308100
rosa_samantha	Rh6BG427300 Rh6CG433900 Rh6DG420800
rosa_wichuraiana	Rw6G036400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	316
AciI	CCGC	3 cut(s)	109, 513, 575
AclWI	GGATC	1 cut(s)	680
AcsI	RAATTY	1 cut(s)	287
AfaI	GTAC	1 cut(s)	635
AfeI	AGCGCT	1 cut(s)	598
AfiI	CCNNNNNNNGG	2 cut(s)	316, 424
AflIII	ACRYGT	1 cut(s)	708
AgsI	TTSAA	4 cut(s)	167, 201, 223, 292
AleI	CACNNNNGTG	1 cut(s)	530
AluBI	AGCT	4 cut(s)	152, 430, 442, 589
AluI	AGCT	4 cut(s)	152, 430, 442, 589
Alw26I	GTCTC	1 cut(s)	447
AlwI	GGATC	1 cut(s)	680
Aor51HI	AGCGCT	1 cut(s)	598
AoxI	GGCC	2 cut(s)	343, 515
ApeKI	GCWGC	5 cut(s)	380, 473, 586, 662, 665
ApoI	RAATTY	1 cut(s)	287
AspLEI	GCGC	1 cut(s)	599
AspS9I	GGNCC	1 cut(s)	515
AsuHPI	GGTGA	3 cut(s)	49, 517, 604
BaeGI	GKGCMC	1 cut(s)	191
BauI	CACGAG	1 cut(s)	263
BbvI	GCAGC	5 cut(s)	392, 485, 598, 649, 652
BccI	CCATC	4 cut(s)	367, 499, 565, 619
BceAI	ACGGC	1 cut(s)	69
BciVI	GTATCC	1 cut(s)	127
BcoDI	GTCTC	1 cut(s)	447
BfaI	CTAG	2 cut(s)	470, 672
BfoI	RGCGCY	1 cut(s)	600
BfuI	GTATCC	1 cut(s)	127
BisI	GCNGC	6 cut(s)	381, 474, 576, 587, 663, 666
BlsI	GCNGC	6 cut(s)	382, 475, 577, 588, 664, 667
BmgT120I	GGNCC	1 cut(s)	515
BmsI	GCATC	2 cut(s)	66, 677
Bpu10I	CCTNAGC	1 cut(s)	148
BsaAI	YACGTR	2 cut(s)	532, 711
BsaJI	CCNNGG	1 cut(s)	135
BsaXI	ACNNNNNCTCC	2 cut(s)	193, 223
Bsc4I	CCNNNNNNNGG	2 cut(s)	316, 424
BseDI	CCNNGG	1 cut(s)	135
BseGI	GGATG	2 cut(s)	510, 630
BseLI	CCNNNNNNNGG	2 cut(s)	316, 424
BseRI	GAGGAG	2 cut(s)	20, 201
BseSI	GKGCMC	1 cut(s)	191
BseXI	GCAGC	5 cut(s)	392, 485, 598, 649, 652
BseYI	CCCAGC	1 cut(s)	31
Bsh1285I	CGRYCG	1 cut(s)	92
BshFI	GGCC	2 cut(s)	345, 517
BsiEI	CGRYCG	1 cut(s)	92
BslI	CCNNNNNNNGG	2 cut(s)	316, 424
BsmAI	GTCTC	1 cut(s)	447
BsnI	GGCC	2 cut(s)	345, 517
Bsp1286I	GDGCHC	1 cut(s)	191
Bsp143I	GATC	4 cut(s)	89, 259, 460, 685
BspACI	CCGC	3 cut(s)	109, 513, 575
BspANI	GGCC	2 cut(s)	345, 517
BspPI	GGATC	1 cut(s)	680
BssECI	CCNNGG	1 cut(s)	135
BssMI	GATC	4 cut(s)	89, 259, 460, 685
BssSI	CACGAG	1 cut(s)	263
Bst2BI	CACGAG	1 cut(s)	263
Bst4CI	ACNGT	5 cut(s)	124, 136, 179, 231, 496
BstBAI	YACGTR	2 cut(s)	532, 711
BstC8I	GCNNGC	2 cut(s)	343, 515
BstDEI	CTNAG	1 cut(s)	148
BstDSI	CCRYGG	1 cut(s)	135
BstF5I	GGATG	2 cut(s)	510, 630
BstH2I	RGCGCY	1 cut(s)	600
BstHHI	GCGC	1 cut(s)	599
BstKTI	GATC	4 cut(s)	92, 262, 463, 688
BstMAI	GTCTC	1 cut(s)	447
BstMBI	GATC	4 cut(s)	89, 259, 460, 685
BstMCI	CGRYCG	1 cut(s)	92
BstMWI	GCNNNNNNNGC	4 cut(s)	85, 137, 330, 575
BstSLI	GKGCMC	1 cut(s)	191
BstV1I	GCAGC	5 cut(s)	392, 485, 598, 649, 652
BstXI	CCANNNNNNTGG	1 cut(s)	362
BsuI	GTATCC	1 cut(s)	127
BsuRI	GGCC	2 cut(s)	345, 517
BtgI	CCRYGG	1 cut(s)	135
BtgZI	GCGATG	1 cut(s)	584
BtsCI	GGATG	2 cut(s)	510, 630
BtsI	GCAGTG	1 cut(s)	657
BtsIMutI	CAGTG	1 cut(s)	657
Cac8I	GCNNGC	2 cut(s)	343, 515
CfoI	GCGC	1 cut(s)	599
Cfr13I	GGNCC	1 cut(s)	515
Csp6I	GTAC	1 cut(s)	634
CspCI	CAANNNNNGTGG	2 cut(s)	6, 41
CviAII	CATG	2 cut(s)	45, 128
CviQI	GTAC	1 cut(s)	634
DdeI	CTNAG	1 cut(s)	148
DpnI	GATC	4 cut(s)	91, 261, 462, 687
DpnII	GATC	4 cut(s)	89, 259, 460, 685
Eco147I	AGGCCT	1 cut(s)	345
Eco47III	AGCGCT	1 cut(s)	598
FaeI	CATG	2 cut(s)	48, 131
FaiI	YATR	9 cut(s)	46, 68, 129, 254, 256, 420, 466, 488, 702
FatI	CATG	2 cut(s)	44, 127
FauI	CCCGC	1 cut(s)	506
Fnu4HI	GCNGC	6 cut(s)	381, 474, 576, 587, 663, 666
FokI	GGATG	2 cut(s)	517, 637
Fsp4HI	GCNGC	6 cut(s)	381, 474, 576, 587, 663, 666
FspBI	CTAG	2 cut(s)	470, 672
GlaI	GCGC	1 cut(s)	598
GluI	GCNGC	6 cut(s)	381, 474, 576, 587, 663, 666
GsaI	CCCAGC	1 cut(s)	35
HaeII	RGCGCY	1 cut(s)	600
HaeIII	GGCC	2 cut(s)	345, 517
HhaI	GCGC	1 cut(s)	599
Hin1II	CATG	2 cut(s)	48, 131
Hin6I	GCGC	1 cut(s)	597
HinP1I	GCGC	1 cut(s)	597
HinfI	GANTC	1 cut(s)	535
HphI	GGTGA	3 cut(s)	49, 517, 604
Hpy188I	TCNGA	2 cut(s)	84, 370
Hpy188III	TCNNGA	2 cut(s)	167, 296
HpyAV	CCTTC	1 cut(s)	421
HpyCH4III	ACNGT	5 cut(s)	124, 136, 179, 231, 496
HpyCH4IV	ACGT	2 cut(s)	531, 710
HpyCH4V	TGCA	6 cut(s)	17, 105, 131, 500, 586, 668
HpyF10VI	GCNNNNNNNGC	4 cut(s)	85, 137, 330, 575
HpyF3I	CTNAG	1 cut(s)	148
HpySE526I	ACGT	2 cut(s)	531, 710
Hsp92II	CATG	2 cut(s)	48, 131
HspAI	GCGC	1 cut(s)	597
Kzo9I	GATC	4 cut(s)	89, 259, 460, 685
LmnI	GCTCC	3 cut(s)	7, 338, 427
LpnPI	CCDG	9 cut(s)	17, 179, 195, 309, 327, 418, 564, 575, 589
Lsp1109I	GCAGC	5 cut(s)	392, 485, 598, 649, 652
LweI	GCATC	2 cut(s)	66, 677
MaeI	CTAG	2 cut(s)	470, 672
MaeII	ACGT	2 cut(s)	531, 710
MaeIII	GTNAC	3 cut(s)	142, 446, 532
MalI	GATC	4 cut(s)	91, 261, 462, 687
MboI	GATC	4 cut(s)	89, 259, 460, 685
MboII	GAAGA	2 cut(s)	198, 298
MhlI	GDGCHC	1 cut(s)	191
MluCI	AATT	5 cut(s)	12, 287, 301, 483, 638
MlyI	GAGTC	1 cut(s)	529
MmeI	TCCRAC	1 cut(s)	348
MnlI	CCTC	7 cut(s)	167, 201, 222, 284, 425, 615, 642
MslI	CAYNNNNRTG	1 cut(s)	530
MspA1I	CMGCKG	1 cut(s)	589
MwoI	GCNNNNNNNGC	4 cut(s)	85, 137, 330, 575
NdeII	GATC	4 cut(s)	89, 259, 460, 685
NlaIII	CATG	2 cut(s)	48, 131
NmuCI	GTSAC	2 cut(s)	142, 532
OliI	CACNNNNGTG	1 cut(s)	530
PceI	AGGCCT	1 cut(s)	345
PflFI	GACNNNGTC	1 cut(s)	538
PflMI	CCANNNNNTGG	1 cut(s)	316
PkrI	GCNGC	6 cut(s)	382, 475, 577, 588, 664, 667
Ple19I	CGATCG	1 cut(s)	92
PleI	GAGTC	1 cut(s)	529
PpsI	GAGTC	1 cut(s)	529
Ppu21I	YACGTR	2 cut(s)	532, 711
PspFI	CCCAGC	1 cut(s)	31
PspPI	GGNCC	1 cut(s)	515
PsrI	GAACNNNNNNTAC	2 cut(s)	108, 140
PsyI	GACNNNGTC	1 cut(s)	538
PvuI	CGATCG	1 cut(s)	92
PvuII	CAGCTG	1 cut(s)	589
RsaI	GTAC	1 cut(s)	635
RsaNI	GTAC	1 cut(s)	634
RseI	CAYNNNNRTG	1 cut(s)	530
SatI	GCNGC	6 cut(s)	381, 474, 576, 587, 663, 666
Sau3AI	GATC	4 cut(s)	89, 259, 460, 685
Sau96I	GGNCC	1 cut(s)	515
SchI	GAGTC	1 cut(s)	529
SduI	GDGCHC	1 cut(s)	191
SetI	ASST	9 cut(s)	149, 154, 432, 444, 471, 530, 534, 591, 713
SfaNI	GCATC	2 cut(s)	66, 677
SmiMI	CAYNNNNRTG	1 cut(s)	530
Sse9I	AATT	5 cut(s)	12, 287, 301, 483, 638
SseBI	AGGCCT	1 cut(s)	345
SsiI	CCGC	3 cut(s)	109, 513, 575
SspMI	CTAG	2 cut(s)	470, 672
StuI	AGGCCT	1 cut(s)	345
TaaI	ACNGT	5 cut(s)	124, 136, 179, 231, 496
TaiI	ACGT	2 cut(s)	534, 713
TaqI	TCGA	2 cut(s)	96, 684
TasI	AATT	5 cut(s)	12, 287, 301, 483, 638
TatI	WGTACW	1 cut(s)	633
TauI	GCSGC	1 cut(s)	578
TscAI	CASTG	1 cut(s)	664
TseFI	GTSAC	2 cut(s)	142, 532
TseI	GCWGC	5 cut(s)	380, 473, 586, 662, 665
Tsp45I	GTSAC	2 cut(s)	142, 532
TspDTI	ATGAA	4 cut(s)	33, 55, 116, 547
TspRI	CASTG	1 cut(s)	664
Tth111I	GACNNNGTC	1 cut(s)	538
Van91I	CCANNNNNTGG	1 cut(s)	316
XapI	RAATTY	1 cut(s)	287
XspI	CTAG	2 cut(s)	470, 672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.