AT1G45010

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0007728
Physical Location & Seq
Reverse (-)
17013385 .. 17015520
2136 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G45010.1

Sequence Viewer

Length: 696 bp
ATGGAGGAAGAACAAGTAAGAGCAATTAAGATAATAGTATTTGGAGTCATCTCATGGGGTGTGGCCTTCATTCTCACCCGGAGAATCTTCTCAAGCTACTCATTCAGCTTCAGCAACCGTCTTCTCTCCACGGCTCACGCGACTATCGCTGTCACTTTAGCAACACTCTCTGTTCAAGATTTGTCTTGCCCTGTTTGTCCCCTTGCTTCTAAGCCATCTCATAAACAGATGGACGTGATGGCGTTTTCGTTGTCGTACATGATCTACGATCTAATATGTTGTCATTTCGATCAAGTGTTTAGCATTGATAACGCGGTTCATCATTTCGTTAGCATTCTTGGTTTTATAGCTGGACTTGCATACCAAAAGTCTGGATCTGAGATCGTGGCTACACTGTGGGTAGCAGAGATATCAAGTCCTTTTTTCCACCTTAGGGAGATTCTCAAAGAGATTGGATACAAAGACACCAAACTCAATCTAGCTGCCGATGTGTGTTTTGCCACTATATTCACATTGGCGAGAATTGTGTGTGGACCTTTCCTCGTTTACGTCAGTCTATCAGCTGATAATCCCATCTTCATCAAGGCAATGGGATCAGGATTACAACTCGTGAGCATCTTTTGGTTCTATAAAATTTTCGGGATGATGAGATATAAACTTTTTAAGAAGCCAAAGTCAAACAAAAAGTCTACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TRAM_LAG1_CLN8

Protein Analysis

231

Amino Acids

25.92

Weight (kDa)

9.11

Isoelectric Point (pI)

35.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TRAM_LAG1_CLN8 PF03798 37 - 213 1.9e-22 TLC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 689
AccII CGCG 2 cut(s) 140, 314
AciI CCGC 1 cut(s) 314
AclWI GGATC 2 cut(s) 382, 601
AcsI RAATTY 1 cut(s) 633
AcuI CTGAAG 1 cut(s) 94
AfaI GTAC 1 cut(s) 257
AfiI CCNNNNNNNGG 1 cut(s) 433
AgsI TTSAA 1 cut(s) 176
AjiI CACGTC 1 cut(s) 235
AluBI AGCT 5 cut(s) 96, 108, 350, 482, 563
AluI AGCT 5 cut(s) 96, 108, 350, 482, 563
AlwI GGATC 2 cut(s) 382, 601
AoxI GGCC 1 cut(s) 63
ApeKI GCWGC 1 cut(s) 482
ApoI RAATTY 1 cut(s) 633
ArsI GACNNNNNNTTYG 1 cut(s) 671
AspS9I GGNCC 1 cut(s) 533
AsuC2I CCSGG 1 cut(s) 79
AsuHPI GGTGA 1 cut(s) 67
AvaII GGWCC 1 cut(s) 533
AxyI CCTNAGG 1 cut(s) 431
BauI CACGAG 1 cut(s) 608
BbsI GAAGAC 1 cut(s) 113
BbvI GCAGC 1 cut(s) 469
BccI CCATC 4 cut(s) 223, 223, 232, 581
BceAI ACGGC 1 cut(s) 147
BciVI GTATCC 1 cut(s) 449
BcnI CCSGG 1 cut(s) 79
BfaI CTAG 1 cut(s) 479
BfuI GTATCC 1 cut(s) 449
BisI GCNGC 1 cut(s) 483
BlsI GCNGC 1 cut(s) 484
Bme1390I CCNGG 1 cut(s) 79
Bme18I GGWCC 1 cut(s) 533
BmgBI CACGTC 1 cut(s) 235
BmgT120I GGNCC 1 cut(s) 533
BmrFI CCNGG 1 cut(s) 79
BmsI GCATC 1 cut(s) 624
BpiI GAAGAC 1 cut(s) 113
BpuEI CTTGAG 1 cut(s) 76
BpuMI CCSGG 1 cut(s) 79
BsaJI CCNNGG 1 cut(s) 129
Bsc4I CCNNNNNNNGG 1 cut(s) 433
Bse21I CCTNAGG 1 cut(s) 431
Bse3DI GCAATG 1 cut(s) 594
BseDI CCNNGG 1 cut(s) 129
BseGI GGATG 1 cut(s) 648
BseLI CCNNNNNNNGG 1 cut(s) 433
BseMI GCAATG 1 cut(s) 594
BseMII CTCAG 1 cut(s) 369
BseXI GCAGC 1 cut(s) 469
Bsh1236I CGCG 2 cut(s) 140, 314
BshFI GGCC 1 cut(s) 65
BsiSI CCGG 1 cut(s) 79
BslFI GGGAC 1 cut(s) 183
BslI CCNNNNNNNGG 1 cut(s) 433
BsmFI GGGAC 1 cut(s) 183
BsmI GAATGC 1 cut(s) 333
BsnI GGCC 1 cut(s) 65
Bsp143I GATC 6 cut(s) 261, 268, 289, 374, 381, 593
BspACI CCGC 1 cut(s) 314
BspANI GGCC 1 cut(s) 65
BspCNI CTCAG 1 cut(s) 370
BspFNI CGCG 2 cut(s) 140, 314
BspPI GGATC 2 cut(s) 382, 601
BsrDI GCAATG 1 cut(s) 594
BssECI CCNNGG 1 cut(s) 129
BssMI GATC 6 cut(s) 261, 268, 289, 374, 381, 593
BssSI CACGAG 1 cut(s) 608
Bst2BI CACGAG 1 cut(s) 608
Bst4CI ACNGT 2 cut(s) 119, 396
BstDEI CTNAG 4 cut(s) 210, 378, 431, 693
BstDSI CCRYGG 1 cut(s) 129
BstF5I GGATG 1 cut(s) 648
BstFNI CGCG 2 cut(s) 140, 314
BstKTI GATC 6 cut(s) 264, 271, 292, 377, 384, 596
BstMBI GATC 6 cut(s) 261, 268, 289, 374, 381, 593
BstMWI GCNNNNNNNGC 2 cut(s) 146, 356
BstSCI CCNGG 1 cut(s) 77
BstUI CGCG 2 cut(s) 140, 314
BstV1I GCAGC 1 cut(s) 469
BstV2I GAAGAC 1 cut(s) 113
BstX2I RGATCY 1 cut(s) 374
BstXI CCANNNNNNTGG 1 cut(s) 371
BstYI RGATCY 1 cut(s) 374
Bsu36I CCTNAGG 1 cut(s) 431
BsuI GTATCC 1 cut(s) 449
BsuRI GGCC 1 cut(s) 65
BtgI CCRYGG 1 cut(s) 129
BtrI CACGTC 1 cut(s) 235
BtsCI GGATG 1 cut(s) 648
BtsIMutI CAGTG 1 cut(s) 392
Cfr13I GGNCC 1 cut(s) 533
Csp6I GTAC 1 cut(s) 256
CviAII CATG 2 cut(s) 54, 259
CviQI GTAC 1 cut(s) 256
DdeI CTNAG 4 cut(s) 210, 378, 431, 693
DpnI GATC 6 cut(s) 263, 270, 291, 376, 383, 595
DpnII GATC 6 cut(s) 261, 268, 289, 374, 381, 593
Eco32I GATATC 1 cut(s) 411
Eco47I GGWCC 1 cut(s) 533
Eco57I CTGAAG 1 cut(s) 94
Eco81I CCTNAGG 1 cut(s) 431
EcoRV GATATC 1 cut(s) 411
FaeI CATG 2 cut(s) 57, 262
FaiI YATR 9 cut(s) 55, 222, 260, 277, 347, 361, 506, 630, 654
FaqI GGGAC 1 cut(s) 183
FatI CATG 2 cut(s) 53, 258
FblI GTMKAC 1 cut(s) 689
Fnu4HI GCNGC 1 cut(s) 483
FokI GGATG 1 cut(s) 655
Fsp4HI GCNGC 1 cut(s) 483
FspBI CTAG 1 cut(s) 479
GluI GCNGC 1 cut(s) 483
HaeIII GGCC 1 cut(s) 65
HapII CCGG 1 cut(s) 79
Hin1II CATG 2 cut(s) 57, 262
HinfI GANTC 3 cut(s) 45, 84, 439
HpaII CCGG 1 cut(s) 79
HphI GGTGA 1 cut(s) 67
Hpy166II GTNNAC 3 cut(s) 533, 547, 690
Hpy188I TCNGA 1 cut(s) 379
Hpy188III TCNNGA 5 cut(s) 176, 372, 597, 610, 640
Hpy8I GTNNAC 3 cut(s) 533, 547, 690
HpyAV CCTTC 1 cut(s) 76
HpyCH4III ACNGT 2 cut(s) 119, 396
HpyCH4IV ACGT 2 cut(s) 234, 549
HpyCH4V TGCA 1 cut(s) 359
HpyF10VI GCNNNNNNNGC 2 cut(s) 146, 356
HpyF3I CTNAG 4 cut(s) 210, 378, 431, 693
HpySE526I ACGT 2 cut(s) 234, 549
Hsp92II CATG 2 cut(s) 57, 262
Kzo9I GATC 6 cut(s) 261, 268, 289, 374, 381, 593
LpnPI CCDG 5 cut(s) 92, 204, 336, 357, 582
Lsp1109I GCAGC 1 cut(s) 469
LweI GCATC 1 cut(s) 624
MaeI CTAG 1 cut(s) 479
MaeII ACGT 2 cut(s) 234, 549
MaeIII GTNAC 1 cut(s) 151
MalI GATC 6 cut(s) 263, 270, 291, 376, 383, 595
MboI GATC 6 cut(s) 261, 268, 289, 374, 381, 593
MboII GAAGA 4 cut(s) 20, 79, 113, 568
MflI RGATCY 1 cut(s) 374
MluCI AATT 3 cut(s) 24, 522, 633
MlyI GAGTC 1 cut(s) 54
MnlI CCTC 1 cut(s) 551
MseI TTAA 2 cut(s) 27, 663
MspA1I CMGCKG 1 cut(s) 563
MspI CCGG 1 cut(s) 79
MspR9I CCNGG 1 cut(s) 79
Mva1269I GAATGC 1 cut(s) 333
MvnI CGCG 2 cut(s) 140, 314
MwoI GCNNNNNNNGC 2 cut(s) 146, 356
NciI CCSGG 1 cut(s) 79
NdeII GATC 6 cut(s) 261, 268, 289, 374, 381, 593
NlaIII CATG 2 cut(s) 57, 262
NmuCI GTSAC 1 cut(s) 151
PcsI WCGNNNNNNNCGW 1 cut(s) 137
PctI GAATGC 1 cut(s) 333
PfeI GAWTC 2 cut(s) 84, 439
PkrI GCNGC 1 cut(s) 484
PleI GAGTC 1 cut(s) 53
PpsI GAGTC 1 cut(s) 53
PspPI GGNCC 1 cut(s) 533
PsuI RGATCY 1 cut(s) 374
PvuII CAGCTG 1 cut(s) 563
RsaI GTAC 1 cut(s) 257
RsaNI GTAC 1 cut(s) 256
SaqAI TTAA 2 cut(s) 27, 663
SatI GCNGC 1 cut(s) 483
Sau3AI GATC 6 cut(s) 261, 268, 289, 374, 381, 593
Sau96I GGNCC 1 cut(s) 533
SchI GAGTC 1 cut(s) 54
ScrFI CCNGG 1 cut(s) 79
SetI ASST 9 cut(s) 98, 110, 237, 352, 432, 484, 538, 552, 565
SfaNI GCATC 1 cut(s) 624
SinI GGWCC 1 cut(s) 533
SmlI CTYRAG 1 cut(s) 91
SmoI CTYRAG 1 cut(s) 91
Sse9I AATT 3 cut(s) 24, 522, 633
SsiI CCGC 1 cut(s) 314
SspMI CTAG 1 cut(s) 479
StyD4I CCNGG 1 cut(s) 77
TaaI ACNGT 2 cut(s) 119, 396
TaiI ACGT 2 cut(s) 237, 552
TaqI TCGA 1 cut(s) 288
TasI AATT 3 cut(s) 24, 522, 633
TfiI GAWTC 2 cut(s) 84, 439
Tru1I TTAA 2 cut(s) 27, 663
Tru9I TTAA 2 cut(s) 27, 663
TscAI CASTG 1 cut(s) 399
TseFI GTSAC 1 cut(s) 151
TseI GCWGC 1 cut(s) 482
Tsp45I GTSAC 1 cut(s) 151
TspDTI ATGAA 3 cut(s) 58, 308, 568
TspRI CASTG 1 cut(s) 399
VpaK11BI GGWCC 1 cut(s) 533
XapI RAATTY 1 cut(s) 633
XmiI GTMKAC 1 cut(s) 689
XspI CTAG 1 cut(s) 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.