Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0007728

Physical Location & Seq

Genomic Coordinates Reverse (-)

33990075 .. 33992263

Gene Structure 2189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G374200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGAAGAGCATATTGCGAGTCTTGTACTGTTGGGGGTAATTTCATGGACAACAGCCTTTCTGTTCATAAGAAAGATGTTTCCAAAGCGGTCCTTTGACTTCTGCAACCGCCTTGTTTCTACAATTCATGCAACTGTAGCTGTAACTTTAGCTTCCTTGTCCGTTGAAGATTGGAAGTGCCCAGTTTGTCCTCAGGCTTCAACGTCTTCTCCTCAGCAGATGAAAGCACTCGCCGTGAGCCTTTCGTATCTCATCTATGATCTGGTGTGTTGCCTCTTTGACAAGAAATTCAATCTTGACAACTGCGTCCACCATTTGGTCAGCATTGTTGGGATTGGAGCAGGCCTTGCCTACCAAAGGTGTGGGTCAGAGATGGTAGCAGCATTGTGGATAACAGAGTTGTCTAGCCCTTTCCTCCACTTAAGGGAGCTTCTCAAAGAGCTTGGTTACAGGGACACCGACCTCAACTTAGCAGCCGATATTTCATTTGCAGCTATATTCACGGTTGCAAGGATGGTTGGGGGACCTTATCTCACTTACGTGACTCTATCTGCTAACAATCCTTTCATCATCAAGGCCATGGCATTAGGATTGCAGCTGGTCAGCGCTTTCTGGTTCTACAAGATTGTAAGGATGGTCAAATACAAAGTGATCAAGAGGACTGGGCCTAAACAAGTTGACGCAACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TRAM_LAG1_CLN8

Protein Analysis

230

Amino Acids

25.51

Weight (kDa)

8.95

Isoelectric Point (pI)

34.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007728)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35170 AT1G35170 AT1G35170 AT1G35170 AT1G35180 AT1G45010 AT1G45010 AT1G45010 AT1G45010
fragaria_vesca	FvH4_2g39310 FvH4_2g39310
malus_domestica	MD08G1024400.v1.1
prunus_persica	Prupe.1G374200_v2.0.a1
pyrus_communis	pycom08g01940
rosa_chinensis	RchiOBHm_Chr6g0301691
rosa_laevigata	RLG00000011231
rosa_multiflora	Rmu_sc0005517.1_g000001 Rmu_sc0034934.1_g000004
rosa_roxburghii	Rroxscaffold_7G00166510
rosa_rugosa	Rorug06G0308100
rosa_samantha	Rh6BG427300 Rh6CG433900 Rh6DG420800
rosa_wichuraiana	Rw6G036400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	305
AccB7I	CCANNNNNTGG	1 cut(s)	316
AciI	CCGC	2 cut(s)	88, 109
AcsI	RAATTY	1 cut(s)	287
AfaI	GTAC	1 cut(s)	27
AfeI	AGCGCT	1 cut(s)	607
AfiI	CCNNNNNNNGG	3 cut(s)	316, 357, 424
AflII	CTTAAG	1 cut(s)	421
AgsI	TTSAA	3 cut(s)	167, 201, 292
AleI	CACNNNNGTG	1 cut(s)	539
AluBI	AGCT	6 cut(s)	140, 152, 430, 442, 494, 598
AluI	AGCT	6 cut(s)	140, 152, 430, 442, 494, 598
Aor51HI	AGCGCT	1 cut(s)	607
AoxI	GGCC	3 cut(s)	343, 576, 665
ApeKI	GCWGC	4 cut(s)	380, 473, 491, 595
ApoI	RAATTY	1 cut(s)	287
AspLEI	GCGC	1 cut(s)	608
AspS9I	GGNCC	3 cut(s)	90, 524, 665
AvaII	GGWCC	2 cut(s)	90, 524
AxyI	CCTNAGG	1 cut(s)	192
BaeGI	GKGCMC	1 cut(s)	182
BbsI	GAAGAC	1 cut(s)	198
BbvCI	CCTCAGC	1 cut(s)	213
BbvI	GCAGC	4 cut(s)	392, 485, 503, 607
BccI	CCATC	3 cut(s)	367, 508, 628
BceAI	ACGGC	1 cut(s)	218
BclI	TGATCA	1 cut(s)	651
BfaI	CTAG	1 cut(s)	405
BfmI	CTRYAG	1 cut(s)	135
BfoI	RGCGCY	1 cut(s)	609
BfrI	CTTAAG	1 cut(s)	421
BisI	GCNGC	4 cut(s)	381, 474, 492, 596
BlsI	GCNGC	4 cut(s)	382, 475, 493, 597
Bme18I	GGWCC	2 cut(s)	90, 524
BmgT120I	GGNCC	3 cut(s)	90, 524, 665
BmiI	GGNNCC	1 cut(s)	525
BmrI	ACTGGG	2 cut(s)	176, 672
BmuI	ACTGGG	2 cut(s)	176, 672
BpiI	GAAGAC	1 cut(s)	198
Bpu10I	CCTNAGC	1 cut(s)	213
BsaAI	YACGTR	1 cut(s)	541
BsaJI	CCNNGG	1 cut(s)	579
BsaXI	ACNNNNNCTCC	2 cut(s)	193, 223
Bsc4I	CCNNNNNNNGG	3 cut(s)	316, 357, 424
Bse1I	ACTGG	2 cut(s)	182, 667
Bse21I	CCTNAGG	1 cut(s)	192
BseDI	CCNNGG	1 cut(s)	579
BseGI	GGATG	2 cut(s)	519, 639
BseLI	CCNNNNNNNGG	3 cut(s)	316, 357, 424
BseMII	CTCAG	2 cut(s)	206, 227
BseNI	ACTGG	2 cut(s)	182, 667
BseRI	GAGGAG	1 cut(s)	201
BseSI	GKGCMC	1 cut(s)	182
BseXI	GCAGC	4 cut(s)	392, 485, 503, 607
BshFI	GGCC	3 cut(s)	345, 578, 667
BslFI	GGGAC	2 cut(s)	467, 537
BslI	CCNNNNNNNGG	3 cut(s)	316, 357, 424
BsmFI	GGGAC	2 cut(s)	467, 537
BsnI	GGCC	3 cut(s)	345, 578, 667
Bsp1286I	GDGCHC	1 cut(s)	182
Bsp143I	GATC	2 cut(s)	259, 651
Bsp19I	CCATGG	1 cut(s)	579
BspACI	CCGC	2 cut(s)	88, 109
BspANI	GGCC	3 cut(s)	345, 578, 667
BspCNI	CTCAG	2 cut(s)	205, 226
BspLI	GGNNCC	1 cut(s)	525
BspTI	CTTAAG	1 cut(s)	421
BsrI	ACTGG	2 cut(s)	182, 667
BssECI	CCNNGG	1 cut(s)	579
BssMI	GATC	2 cut(s)	259, 651
BssT1I	CCWWGG	1 cut(s)	579
Bst4CI	ACNGT	3 cut(s)	30, 136, 505
BstAFI	CTTAAG	1 cut(s)	421
BstAPI	GCANNNNNTGC	1 cut(s)	347
BstBAI	YACGTR	1 cut(s)	541
BstC8I	GCNNGC	1 cut(s)	343
BstDEI	CTNAG	3 cut(s)	192, 213, 469
BstDSI	CCRYGG	1 cut(s)	579
BstENI	CCTNNNNNAGG	1 cut(s)	355
BstF5I	GGATG	2 cut(s)	519, 639
BstH2I	RGCGCY	1 cut(s)	609
BstHHI	GCGC	1 cut(s)	608
BstKTI	GATC	2 cut(s)	262, 654
BstMBI	GATC	2 cut(s)	259, 651
BstMWI	GCNNNNNNNGC	2 cut(s)	137, 347
BstSFI	CTRYAG	1 cut(s)	135
BstSLI	GKGCMC	1 cut(s)	182
BstV1I	GCAGC	4 cut(s)	392, 485, 503, 607
BstV2I	GAAGAC	1 cut(s)	198
BstXI	CCANNNNNNTGG	1 cut(s)	362
Bsu36I	CCTNAGG	1 cut(s)	192
BsuRI	GGCC	3 cut(s)	345, 578, 667
BtgI	CCRYGG	1 cut(s)	579
BtsCI	GGATG	2 cut(s)	519, 639
Cac8I	GCNNGC	1 cut(s)	343
CfoI	GCGC	1 cut(s)	608
Cfr13I	GGNCC	3 cut(s)	90, 524, 665
CseI	GACGC	1 cut(s)	295
Csp6I	GTAC	1 cut(s)	26
CviAII	CATG	3 cut(s)	45, 128, 580
CviQI	GTAC	1 cut(s)	26
DdeI	CTNAG	3 cut(s)	192, 213, 469
DpnI	GATC	2 cut(s)	261, 653
DpnII	GATC	2 cut(s)	259, 651
DrdI	GACNNNNNNGTC	1 cut(s)	305
DseDI	GACNNNNNNGTC	1 cut(s)	305
Eco130I	CCWWGG	1 cut(s)	579
Eco147I	AGGCCT	1 cut(s)	345
Eco47I	GGWCC	2 cut(s)	90, 524
Eco47III	AGCGCT	1 cut(s)	607
Eco81I	CCTNAGG	1 cut(s)	192
EcoNI	CCTNNNNNAGG	1 cut(s)	355
EcoO109I	RGGNCCY	1 cut(s)	524
EcoT14I	CCWWGG	1 cut(s)	579
ErhI	CCWWGG	1 cut(s)	579
FaeI	CATG	3 cut(s)	48, 131, 583
FaiI	YATR	7 cut(s)	12, 46, 68, 129, 258, 497, 581
FalI	AAGNNNNNCTT	2 cut(s)	77, 109
FaqI	GGGAC	2 cut(s)	467, 537
FatI	CATG	3 cut(s)	44, 127, 579
FbaI	TGATCA	1 cut(s)	651
Fnu4HI	GCNGC	4 cut(s)	381, 474, 492, 596
FokI	GGATG	2 cut(s)	526, 646
Fsp4HI	GCNGC	4 cut(s)	381, 474, 492, 596
FspBI	CTAG	1 cut(s)	405
GlaI	GCGC	1 cut(s)	607
GluI	GCNGC	4 cut(s)	381, 474, 492, 596
HaeII	RGCGCY	1 cut(s)	609
HaeIII	GGCC	3 cut(s)	345, 578, 667
HgaI	GACGC	1 cut(s)	295
HhaI	GCGC	1 cut(s)	608
Hin1II	CATG	3 cut(s)	48, 131, 583
Hin6I	GCGC	1 cut(s)	606
HinP1I	GCGC	1 cut(s)	606
HincII	GTYRAC	1 cut(s)	679
HindII	GTYRAC	1 cut(s)	679
HinfI	GANTC	2 cut(s)	19, 544
Hpy166II	GTNNAC	2 cut(s)	310, 679
Hpy188I	TCNGA	1 cut(s)	370
Hpy188III	TCNNGA	2 cut(s)	296, 655
Hpy8I	GTNNAC	2 cut(s)	310, 679
HpyCH4III	ACNGT	3 cut(s)	30, 136, 505
HpyCH4IV	ACGT	2 cut(s)	203, 540
HpyCH4V	TGCA	5 cut(s)	105, 131, 491, 509, 595
HpyF10VI	GCNNNNNNNGC	2 cut(s)	137, 347
HpyF3I	CTNAG	3 cut(s)	192, 213, 469
HpySE526I	ACGT	2 cut(s)	203, 540
Hsp92II	CATG	3 cut(s)	48, 131, 583
HspAI	GCGC	1 cut(s)	606
Ksp22I	TGATCA	1 cut(s)	651
Kzo9I	GATC	2 cut(s)	259, 651
LmnI	GCTCC	2 cut(s)	338, 427
LpnPI	CCDG	8 cut(s)	179, 195, 248, 327, 436, 584, 598, 648
Lsp1109I	GCAGC	4 cut(s)	392, 485, 503, 607
MaeI	CTAG	1 cut(s)	405
MaeII	ACGT	2 cut(s)	203, 540
MaeIII	GTNAC	3 cut(s)	142, 446, 541
MalI	GATC	2 cut(s)	261, 653
MboI	GATC	2 cut(s)	259, 651
MboII	GAAGA	3 cut(s)	17, 179, 198
MhlI	GDGCHC	1 cut(s)	182
MluCI	AATT	3 cut(s)	39, 123, 287
MlyI	GAGTC	2 cut(s)	28, 538
MnlI	CCTC	6 cut(s)	201, 222, 284, 425, 473, 651
MseI	TTAA	1 cut(s)	422
MslI	CAYNNNNRTG	1 cut(s)	539
MspA1I	CMGCKG	1 cut(s)	598
MspCI	CTTAAG	1 cut(s)	421
MwoI	GCNNNNNNNGC	2 cut(s)	137, 347
NcoI	CCATGG	1 cut(s)	579
NdeII	GATC	2 cut(s)	259, 651
NlaIII	CATG	3 cut(s)	48, 131, 583
NlaIV	GGNNCC	1 cut(s)	525
NmuCI	GTSAC	1 cut(s)	541
OliI	CACNNNNGTG	1 cut(s)	539
PceI	AGGCCT	1 cut(s)	345
PflMI	CCANNNNNTGG	1 cut(s)	316
PkrI	GCNGC	4 cut(s)	382, 475, 493, 597
PleI	GAGTC	2 cut(s)	27, 538
PpsI	GAGTC	2 cut(s)	27, 538
Ppu21I	YACGTR	1 cut(s)	541
PpuMI	RGGWCCY	1 cut(s)	524
Psp5II	RGGWCCY	1 cut(s)	524
PspN4I	GGNNCC	1 cut(s)	525
PspPI	GGNCC	3 cut(s)	90, 524, 665
PspPPI	RGGWCCY	1 cut(s)	524
PvuII	CAGCTG	1 cut(s)	598
RsaI	GTAC	1 cut(s)	27
RsaNI	GTAC	1 cut(s)	26
RseI	CAYNNNNRTG	1 cut(s)	539
SaqAI	TTAA	1 cut(s)	422
SatI	GCNGC	4 cut(s)	381, 474, 492, 596
Sau3AI	GATC	2 cut(s)	259, 651
Sau96I	GGNCC	3 cut(s)	90, 524, 665
SchI	GAGTC	2 cut(s)	28, 538
SduI	GDGCHC	1 cut(s)	182
SfcI	CTRYAG	1 cut(s)	135
SinI	GGWCC	2 cut(s)	90, 524
SmiMI	CAYNNNNRTG	1 cut(s)	539
SmlI	CTYRAG	1 cut(s)	421
SmoI	CTYRAG	1 cut(s)	421
Sse9I	AATT	3 cut(s)	39, 123, 287
SseBI	AGGCCT	1 cut(s)	345
SsiI	CCGC	2 cut(s)	88, 109
SspMI	CTAG	1 cut(s)	405
StuI	AGGCCT	1 cut(s)	345
StyI	CCWWGG	1 cut(s)	579
TaaI	ACNGT	3 cut(s)	30, 136, 505
TaiI	ACGT	2 cut(s)	206, 543
TasI	AATT	3 cut(s)	39, 123, 287
TatI	WGTACW	1 cut(s)	25
Tru1I	TTAA	1 cut(s)	422
Tru9I	TTAA	1 cut(s)	422
TseFI	GTSAC	1 cut(s)	541
TseI	GCWGC	4 cut(s)	380, 473, 491, 595
Tsp45I	GTSAC	1 cut(s)	541
TspDTI	ATGAA	6 cut(s)	33, 55, 116, 236, 474, 556
TspGWI	ACGGA	1 cut(s)	151
Van91I	CCANNNNNTGG	1 cut(s)	316
Vha464I	CTTAAG	1 cut(s)	421
VpaK11BI	GGWCC	2 cut(s)	90, 524
XagI	CCTNNNNNAGG	1 cut(s)	355
XapI	RAATTY	1 cut(s)	287
XspI	CTAG	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.