AT1G35340

ATP-dependent protease La (LON) substrate-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0003413
Physical Location & Seq
Forward (+)
12977668 .. 12979947
2280 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G35340.5

Sequence Viewer

Length: 951 bp
ATGCTATTTTCTACGGCTGAGCTTAACGGAGAATCCCTGAATCCGATTACTGCGATTCACATTTTCCCGATGACTTCCACTCTAATCTCCTCAAACCTCTCTTCCTCTTTCTTCCCAACCCAAAATATCCACCGAATTCGAATCCCGACGACTTCAATTCCCGGAAGTTTCAACATTCGCGCACGCCGTTCAAAAATCGTCGCCAAATCTCTCGATCTTCCTCTTCTTCCTTTTAGCATGAGCGAGGTTCTTGTACCAACGGAGAGTAAAACTTTGCATTTATATGAAGCTAGGTACTTAGCTTTACTCGAAGAGTCTATGAAGAGAAAGAAGAATATGTTTGTTCATTTCATTCTAGATCCTATTTCGATTAGTGAGACTGCAACAGAAGCTTCTTTTGCTGCTAGATATGGTTGCTTGGTACTTATTGAAAACGTTGAGAGATTGGATGTTGGTGCACTTGTTTCGATAAGAGGCGCGGGTCGTGTGAAGATTTCGAGGTTTTTAGGGGCAGATCCTTACTTGTCCGGAGAGGTCAGACCAATACAGGATCGTATGAATTATGAGAGCAGCAATGAATTAACCTCAAAAATCTCCCAGCTGAAGGAATCTATTAAAAATCTTAACAGCTTGGAGATCAAACTTAAGGCTCCAGCAGACTCGCCGCTACAAACTCGTCTCATTAACTCTCTAAACTGGGCTGAAGATGAGCCGCCGGTCGACTTTGACGAATCATTCGTACCTTCTCTCCAAGAACGTCTATCATTTTCAGCATTTCAACCCATCTCTGGATCGACGAAGTCGGAACTATCAAGGTTACAACAAGAGAAAATAAAAGCAATGGATATGAAAGATACAATAGAGAGATTAGAACTCTCAATGGGACTCATAAAGGAGAACATCTCCTCAATTGCAGCCAAACTCGCTATCCAATCCTTGGATATTCGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LON_substr_bdg

Protein Analysis

316

Amino Acids

35.32

Weight (kDa)

6.94

Isoelectric Point (pI)

47.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LON_substr_bdg PF02190 73 - 213 7.7e-14 ATP-dependent protease La (LON) substrate-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 937
AccI GTMKAC 1 cut(s) 720
AccII CGCG 2 cut(s) 180, 479
AccIII TCCGGA 1 cut(s) 527
AciI CCGC 3 cut(s) 479, 665, 713
AclI AACGTT 1 cut(s) 435
AclWI GGATC 4 cut(s) 353, 509, 558, 799
AcsI RAATTY 1 cut(s) 135
AcuI CTGAAG 2 cut(s) 623, 723
AfaI GTAC 4 cut(s) 255, 296, 423, 741
AfiI CCNNNNNNNGG 3 cut(s) 604, 788, 937
AflII CTTAAG 1 cut(s) 644
AgsI TTSAA 5 cut(s) 156, 172, 192, 431, 779
AluBI AGCT 6 cut(s) 22, 290, 302, 392, 601, 630
AluI AGCT 6 cut(s) 22, 290, 302, 392, 601, 630
Alw21I GWGCWC 1 cut(s) 460
Alw26I GTCTC 2 cut(s) 371, 683
Alw44I GTGCAC 1 cut(s) 456
AlwI GGATC 4 cut(s) 353, 509, 558, 799
Aor13HI TCCGGA 1 cut(s) 527
ApaLI GTGCAC 1 cut(s) 456
ApeKI GCWGC 3 cut(s) 401, 570, 914
ApoI RAATTY 1 cut(s) 135
ArsI GACNNNNNNTTYG 2 cut(s) 719, 751
AspLEI GCGC 2 cut(s) 182, 479
AsuC2I CCSGG 1 cut(s) 162
AsuII TTCGAA 1 cut(s) 139
BaeGI GKGCMC 1 cut(s) 460
Bbv12I GWGCWC 1 cut(s) 460
BbvI GCAGC 3 cut(s) 388, 582, 926
BccI CCATC 1 cut(s) 791
BceAI ACGGC 2 cut(s) 30, 171
BcgI CGANNNNNNTGC 2 cut(s) 447, 481
BcnI CCSGG 1 cut(s) 162
BcoDI GTCTC 2 cut(s) 371, 683
BfaI CTAG 3 cut(s) 291, 356, 405
BfrI CTTAAG 1 cut(s) 644
BisI GCNGC 5 cut(s) 402, 571, 665, 713, 915
BlpI GCTNAGC 1 cut(s) 18
BlsI GCNGC 5 cut(s) 403, 572, 666, 714, 916
Bme1390I CCNGG 1 cut(s) 162
BmiI GGNNCC 1 cut(s) 651
BmrFI CCNGG 1 cut(s) 162
BmrI ACTGGG 1 cut(s) 706
BmuI ACTGGG 1 cut(s) 706
BplI GAGNNNNNCTC 2 cut(s) 887, 919
BpmI CTGGAG 1 cut(s) 636
Bpu1102I GCTNAGC 1 cut(s) 18
Bpu14I TTCGAA 1 cut(s) 139
BpuMI CCSGG 1 cut(s) 162
BsaJI CCNNGG 1 cut(s) 936
BsaWI WCCGGW 1 cut(s) 527
BsaXI ACNNNNNCTCC 2 cut(s) 732, 762
Bsc4I CCNNNNNNNGG 3 cut(s) 604, 788, 937
Bse118I RCCGGY 1 cut(s) 715
Bse1I ACTGG 1 cut(s) 701
Bse3DI GCAATG 2 cut(s) 580, 846
BseAI TCCGGA 1 cut(s) 527
BseDI CCNNGG 1 cut(s) 936
BseGI GGATG 1 cut(s) 454
BseLI CCNNNNNNNGG 3 cut(s) 604, 788, 937
BseMI GCAATG 2 cut(s) 580, 846
BseMII CTCAG 1 cut(s) 9
BseNI ACTGG 1 cut(s) 701
BseRI GAGGAG 2 cut(s) 79, 895
BseSI GKGCMC 1 cut(s) 460
BseXI GCAGC 3 cut(s) 388, 582, 926
BseYI CCCAGC 1 cut(s) 597
Bsh1236I CGCG 2 cut(s) 180, 479
Bsh1285I CGRYCG 1 cut(s) 720
BsiEI CGRYCG 1 cut(s) 720
BsiHKAI GWGCWC 1 cut(s) 460
BsiSI CCGG 3 cut(s) 162, 528, 716
BslFI GGGAC 1 cut(s) 897
BslI CCNNNNNNNGG 3 cut(s) 604, 788, 937
BsmAI GTCTC 2 cut(s) 371, 683
BsmBI CGTCTC 1 cut(s) 683
BsmFI GGGAC 1 cut(s) 897
Bsp119I TTCGAA 1 cut(s) 139
Bsp1286I GDGCHC 1 cut(s) 460
Bsp13I TCCGGA 1 cut(s) 527
Bsp143I GATC 6 cut(s) 214, 358, 514, 550, 636, 791
Bsp1720I GCTNAGC 1 cut(s) 18
BspACI CCGC 3 cut(s) 479, 665, 713
BspCNI CTCAG 1 cut(s) 10
BspEI TCCGGA 1 cut(s) 527
BspFNI CGCG 2 cut(s) 180, 479
BspLI GGNNCC 1 cut(s) 651
BspPI GGATC 4 cut(s) 353, 509, 558, 799
BspT104I TTCGAA 1 cut(s) 139
BspTI CTTAAG 1 cut(s) 644
BsrDI GCAATG 2 cut(s) 580, 846
BsrFI RCCGGY 1 cut(s) 715
BsrI ACTGG 1 cut(s) 701
BssAI RCCGGY 1 cut(s) 715
BssECI CCNNGG 1 cut(s) 936
BssMI GATC 6 cut(s) 214, 358, 514, 550, 636, 791
BssT1I CCWWGG 1 cut(s) 936
Bst6I CTCTTC 4 cut(s) 106, 228, 306, 317
BstAFI CTTAAG 1 cut(s) 644
BstBI TTCGAA 1 cut(s) 139
BstC8I GCNNGC 1 cut(s) 184
BstDEI CTNAG 2 cut(s) 18, 298
BstF5I GGATG 1 cut(s) 454
BstFNI CGCG 2 cut(s) 180, 479
BstHHI GCGC 2 cut(s) 182, 479
BstKTI GATC 6 cut(s) 217, 361, 517, 553, 639, 794
BstMAI GTCTC 2 cut(s) 371, 683
BstMBI GATC 6 cut(s) 214, 358, 514, 550, 636, 791
BstMCI CGRYCG 1 cut(s) 720
BstMWI GCNNNNNNNGC 3 cut(s) 389, 398, 923
BstSCI CCNGG 1 cut(s) 160
BstSLI GKGCMC 1 cut(s) 460
BstUI CGCG 2 cut(s) 180, 479
BstV1I GCAGC 3 cut(s) 388, 582, 926
BstX2I RGATCY 2 cut(s) 358, 514
BstYI RGATCY 2 cut(s) 358, 514
BtsCI GGATG 1 cut(s) 454
Cac8I GCNNGC 1 cut(s) 184
CfoI GCGC 2 cut(s) 182, 479
Cfr10I RCCGGY 1 cut(s) 715
Csp6I GTAC 4 cut(s) 254, 295, 422, 740
CviAII CATG 1 cut(s) 238
CviQI GTAC 4 cut(s) 254, 295, 422, 740
DdeI CTNAG 2 cut(s) 18, 298
DpnI GATC 6 cut(s) 216, 360, 516, 552, 638, 793
DpnII GATC 6 cut(s) 214, 358, 514, 550, 636, 791
Eam1104I CTCTTC 4 cut(s) 106, 228, 306, 317
EarI CTCTTC 4 cut(s) 106, 228, 306, 317
Eco130I CCWWGG 1 cut(s) 936
Eco57I CTGAAG 2 cut(s) 623, 723
EcoRI GAATTC 1 cut(s) 135
EcoT14I CCWWGG 1 cut(s) 936
ErhI CCWWGG 1 cut(s) 936
Esp3I CGTCTC 1 cut(s) 683
FaeI CATG 1 cut(s) 241
FaqI GGGAC 1 cut(s) 897
FatI CATG 1 cut(s) 237
FauI CCCGC 1 cut(s) 472
FblI GTMKAC 1 cut(s) 720
Fnu4HI GCNGC 5 cut(s) 402, 571, 665, 713, 915
FokI GGATG 1 cut(s) 461
Fsp4HI GCNGC 5 cut(s) 402, 571, 665, 713, 915
FspBI CTAG 3 cut(s) 291, 356, 405
GlaI GCGC 2 cut(s) 181, 478
GluI GCNGC 5 cut(s) 402, 571, 665, 713, 915
GsaI CCCAGC 1 cut(s) 601
GsuI CTGGAG 1 cut(s) 636
HapII CCGG 3 cut(s) 162, 528, 716
HhaI GCGC 2 cut(s) 182, 479
Hin1II CATG 1 cut(s) 241
Hin6I GCGC 2 cut(s) 180, 477
HinP1I GCGC 2 cut(s) 180, 477
HincII GTYRAC 1 cut(s) 721
HindII GTYRAC 1 cut(s) 721
HindIII AAGCTT 1 cut(s) 390
HinfI GANTC 9 cut(s) 32, 40, 55, 141, 314, 608, 659, 731, 885
HpaII CCGG 3 cut(s) 162, 528, 716
Hpy166II GTNNAC 2 cut(s) 458, 721
Hpy188I TCNGA 3 cut(s) 45, 539, 805
Hpy188III TCNNGA 6 cut(s) 67, 145, 212, 356, 528, 789
Hpy8I GTNNAC 2 cut(s) 458, 721
Hpy99I CGWCG 3 cut(s) 151, 203, 799
HpyAV CCTTC 2 cut(s) 598, 753
HpyCH4IV ACGT 2 cut(s) 435, 757
HpyCH4V TGCA 4 cut(s) 277, 383, 458, 914
HpyF10VI GCNNNNNNNGC 3 cut(s) 389, 398, 923
HpyF3I CTNAG 2 cut(s) 18, 298
HpySE526I ACGT 2 cut(s) 435, 757
Hsp92II CATG 1 cut(s) 241
HspAI GCGC 2 cut(s) 180, 477
Kpn2I TCCGGA 1 cut(s) 527
Kzo9I GATC 6 cut(s) 214, 358, 514, 550, 636, 791
LmnI GCTCC 1 cut(s) 655
LpnPI CCDG 9 cut(s) 50, 175, 533, 541, 611, 666, 682, 729, 774
Lsp1109I GCAGC 3 cut(s) 388, 582, 926
MaeI CTAG 3 cut(s) 291, 356, 405
MaeII ACGT 2 cut(s) 435, 757
MaeIII GTNAC 1 cut(s) 816
MalI GATC 6 cut(s) 216, 360, 516, 552, 638, 793
MboI GATC 6 cut(s) 214, 358, 514, 550, 636, 791
MfeI CAATTG 1 cut(s) 909
MflI RGATCY 2 cut(s) 358, 514
MhlI GDGCHC 1 cut(s) 460
MluCI AATT 5 cut(s) 135, 156, 559, 578, 909
MlyI GAGTC 3 cut(s) 323, 653, 879
MmeI TCCRAC 1 cut(s) 783
MroI TCCGGA 1 cut(s) 527
MseI TTAA 6 cut(s) 24, 581, 615, 624, 645, 684
MslI CAYNNNNRTG 1 cut(s) 282
MspA1I CMGCKG 1 cut(s) 601
MspCI CTTAAG 1 cut(s) 644
MspI CCGG 3 cut(s) 162, 528, 716
MspR9I CCNGG 1 cut(s) 162
MunI CAATTG 1 cut(s) 909
MvnI CGCG 2 cut(s) 180, 479
MwoI GCNNNNNNNGC 3 cut(s) 389, 398, 923
NciI CCSGG 1 cut(s) 162
NdeII GATC 6 cut(s) 214, 358, 514, 550, 636, 791
NlaIII CATG 1 cut(s) 241
NlaIV GGNNCC 1 cut(s) 651
NspV TTCGAA 1 cut(s) 139
PcsI WCGNNNNNNNCGW 3 cut(s) 184, 726, 735
PfeI GAWTC 6 cut(s) 32, 40, 55, 141, 608, 731
PflFI GACNNNGTC 1 cut(s) 799
PflMI CCANNNNNTGG 1 cut(s) 937
PfoI TCCNGGA 1 cut(s) 160
PkrI GCNGC 5 cut(s) 403, 572, 666, 714, 916
PleI GAGTC 3 cut(s) 322, 653, 879
PpsI GAGTC 3 cut(s) 322, 653, 879
Psp1406I AACGTT 1 cut(s) 435
PspFI CCCAGC 1 cut(s) 597
PspN4I GGNNCC 1 cut(s) 651
PsuI RGATCY 2 cut(s) 358, 514
PsyI GACNNNGTC 1 cut(s) 799
PvuII CAGCTG 1 cut(s) 601
RsaI GTAC 4 cut(s) 255, 296, 423, 741
RsaNI GTAC 4 cut(s) 254, 295, 422, 740
RseI CAYNNNNRTG 1 cut(s) 282
SalI GTCGAC 1 cut(s) 719
SaqAI TTAA 6 cut(s) 24, 581, 615, 624, 645, 684
SatI GCNGC 5 cut(s) 402, 571, 665, 713, 915
Sau3AI GATC 6 cut(s) 214, 358, 514, 550, 636, 791
SchI GAGTC 3 cut(s) 323, 653, 879
ScrFI CCNGG 1 cut(s) 162
SduI GDGCHC 1 cut(s) 460
SfuI TTCGAA 1 cut(s) 139
SmiMI CAYNNNNRTG 1 cut(s) 282
SmlI CTYRAG 1 cut(s) 644
SmoI CTYRAG 1 cut(s) 644
Sse9I AATT 5 cut(s) 135, 156, 559, 578, 909
SsiI CCGC 3 cut(s) 479, 665, 713
SspMI CTAG 3 cut(s) 291, 356, 405
StyD4I CCNGG 1 cut(s) 160
StyI CCWWGG 1 cut(s) 936
TaiI ACGT 2 cut(s) 438, 760
TaqI TCGA 8 cut(s) 139, 213, 309, 368, 467, 497, 720, 794
TasI AATT 5 cut(s) 135, 156, 559, 578, 909
TauI GCSGC 2 cut(s) 667, 715
TfiI GAWTC 6 cut(s) 32, 40, 55, 141, 608, 731
Tru1I TTAA 6 cut(s) 24, 581, 615, 624, 645, 684
Tru9I TTAA 6 cut(s) 24, 581, 615, 624, 645, 684
TseI GCWGC 3 cut(s) 401, 570, 914
TspDTI ATGAA 7 cut(s) 300, 335, 335, 340, 572, 591, 863
TspGWI ACGGA 2 cut(s) 42, 275
Tth111I GACNNNGTC 1 cut(s) 799
Van91I CCANNNNNTGG 1 cut(s) 937
Vha464I CTTAAG 1 cut(s) 644
VneI GTGCAC 1 cut(s) 456
XapI RAATTY 1 cut(s) 135
XbaI TCTAGA 1 cut(s) 355
XmiI GTMKAC 1 cut(s) 720
XspI CTAG 3 cut(s) 291, 356, 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.