Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003153.1

Orthogroup ID

OG0003413

Physical Location & Seq

Genomic Coordinates Reverse (-)

66008 .. 73134

Gene Structure 7127 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003153.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

atgacttgtacggccttcaatctcaccaccaccagcccctttctccctgcaaggacgacccgaatccgaaacccgcacccgaccctccaccgtttcctccatttcggattcacccgcccgaagcagaaacgatgccgtttctccccgccaaacgccacctcattggagctcccgctgctccccttcaccttgaccgaggttctggttccaactgagagtaaaacactgcatttatatgaagccagatatcttgctcttctcgaggagtcattgttgaggaacaagaagttctttgtgcattttgtgctggatcctatcattattgatgattcattggaagaagcatcttttgcagctagaaatggttgtttggtatttatagaaaatgttgagagattagaagttggagcattagtctctataagaggaattggtcgtgtaaagattatcaaatttctgcaggcagatccttacttgaaaggtgttgtcatacccgtgcaggacagggtaccagatagtgtaagcagattaagccccaaagtttttcaagtaaaagaggctctgtgtagtttaaatagtttggaaatcaaactaaaggctccaaaggaggcacctttgcagactcaaattgccaactctctgatgtggacggaaaaggaactacaagtggactgtgatgaagctttctttccttccttggctgagcgtgtatcctttgcggcacttcaacctgtatcaggatcaagtcaatcggaacttctgaagctgcagcaagagaaattaaaggcaatggagctgaaagacacaatgcataggctagataattcattacagtttgtcaaagataatatctccatggttgcagccaagcttgcaatacaatcagtagagatgaacaaccctaccctgcctccttctctctctgcctccttcgactcagaggctctctctctccgtcttccaccgccggtgtctcttagattgagggtcaaagtcggggcagttaaaaatgcagtccaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LON_substr_bdg

Protein Analysis

340

Amino Acids

38.07

Weight (kDa)

9.15

Isoelectric Point (pI)

49.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35340 AT1G35340 AT1G35340 AT1G35340 AT1G35340 AT1G35340 AT1G35340
fragaria_vesca	FvH4_5g26640 FvH4_5g31600 FvH4_5g31600 FvH4_5g31600
malus_domestica	MD04G1056900.v1.1 MD14G1036300.v1.1 MD15G1405700.v1.1
prunus_persica	Prupe.1G555700_v2.0.a1 Prupe.1G555700_v2.0.a1 Prupe.1G555700_v2.0.a1 Prupe.1G555700_v2.0.a1 Prupe.1G555700_v2.0.a1 Prupe.1G555700_v2.0.a1 Prupe.1G555700_v2.0.a1 Prupe.1G555700_v2.0.a1 Prupe.1G555700_v2.0.a1
pyrus_communis	pycom04g05060 pycom15g36250
rosa_chinensis	RchiOBHm_Chr7g0227131
rosa_laevigata	RLG00000001666
rosa_multiflora	Rmu_sc0003153.1_g000021
rosa_roxburghii	Rroxscaffold_3G00232290
rosa_rugosa	Rorug07G0240900
rosa_samantha	Rh7AG390700 Rh7BG375700 Rh7CG409700 Rh7DG388000
rosa_wichuraiana	Rw0G014520 Rw7G032680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	508
AccB1I	GGYRCC	2 cut(s)	508, 610
AciI	CCGC	6 cut(s)	74, 115, 146, 173, 719, 965
AclWI	GGATC	4 cut(s)	305, 318, 461, 748
AcsI	RAATTY	1 cut(s)	452
AcuI	CTGAAG	1 cut(s)	782
AfaI	GTAC	2 cut(s)	10, 510
AfiI	CCNNNNNNNGG	1 cut(s)	737
AgsI	TTSAA	4 cut(s)	19, 478, 548, 728
AluBI	AGCT	6 cut(s)	169, 356, 683, 766, 796, 871
AluI	AGCT	6 cut(s)	169, 356, 683, 766, 796, 871
Alw21I	GWGCWC	1 cut(s)	171
Alw26I	GTCTC	2 cut(s)	421, 978
AlwI	GGATC	4 cut(s)	305, 318, 461, 748
Ama87I	CYCGRG	1 cut(s)	260
AoxI	GGCC	1 cut(s)	12
ApeKI	GCWGC	5 cut(s)	175, 353, 766, 769, 863
ApoI	RAATTY	1 cut(s)	452
Asp718I	GGTACC	1 cut(s)	508
AsuHPI	GGTGA	3 cut(s)	16, 103, 178
AvaI	CYCGRG	1 cut(s)	260
BamHI	GGATCC	1 cut(s)	310
BanI	GGYRCC	2 cut(s)	508, 610
BanII	GRGCYC	1 cut(s)	171
BbsI	GAAGAC	1 cut(s)	950
Bbv12I	GWGCWC	1 cut(s)	171
BbvI	GCAGC	5 cut(s)	162, 365, 753, 781, 875
BceAI	ACGGC	2 cut(s)	27, 120
BciVI	GTATCC	1 cut(s)	721
BcoDI	GTCTC	2 cut(s)	421, 978
BfaI	CTAG	2 cut(s)	357, 818
BfmI	CTRYAG	2 cut(s)	458, 767
BfuI	GTATCC	1 cut(s)	721
BisI	GCNGC	6 cut(s)	176, 354, 720, 767, 770, 864
BlpI	GCTNAGC	1 cut(s)	702
BlsI	GCNGC	6 cut(s)	177, 355, 721, 768, 771, 865
BmeT110I	CYCGRG	1 cut(s)	260
BmiI	GGNNCC	5 cut(s)	207, 312, 510, 600, 612
BmsI	GCATC	2 cut(s)	122, 353
BpiI	GAAGAC	1 cut(s)	950
BplI	GAGNNNNNCTC	2 cut(s)	932, 964
Bpu1102I	GCTNAGC	1 cut(s)	702
BsaJI	CCNNGG	3 cut(s)	195, 696, 855
BsaXI	ACNNNNNCTCC	6 cut(s)	257, 287, 399, 429, 895, 925
Bsc4I	CCNNNNNNNGG	1 cut(s)	737
Bse118I	RCCGGY	1 cut(s)	967
Bse3DI	GCAATG	1 cut(s)	795
BseDI	CCNNGG	3 cut(s)	195, 696, 855
BseLI	CCNNNNNNNGG	1 cut(s)	737
BseMI	GCAATG	1 cut(s)	795
BseMII	CTCAG	3 cut(s)	204, 693, 951
BseRI	GAGGAG	1 cut(s)	278
BseXI	GCAGC	5 cut(s)	162, 365, 753, 781, 875
BsgI	GTGCAG	1 cut(s)	518
BshFI	GGCC	1 cut(s)	14
BshNI	GGYRCC	2 cut(s)	508, 610
BsiHKAI	GWGCWC	1 cut(s)	171
BsiHKCI	CYCGRG	1 cut(s)	260
BsiSI	CCGG	1 cut(s)	968
BslI	CCNNNNNNNGG	1 cut(s)	737
BsmAI	GTCTC	2 cut(s)	421, 978
BsnI	GGCC	1 cut(s)	14
BsoBI	CYCGRG	1 cut(s)	260
Bsp1286I	GDGCHC	1 cut(s)	171
Bsp143I	GATC	3 cut(s)	310, 466, 740
Bsp1720I	GCTNAGC	1 cut(s)	702
Bsp19I	CCATGG	1 cut(s)	855
BspACI	CCGC	6 cut(s)	74, 115, 146, 173, 719, 965
BspANI	GGCC	1 cut(s)	14
BspCNI	CTCAG	3 cut(s)	205, 694, 950
BspLI	GGNNCC	5 cut(s)	207, 312, 510, 600, 612
BspMAI	CTGCAG	2 cut(s)	462, 771
BspPI	GGATC	4 cut(s)	305, 318, 461, 748
BspQI	GCTCTTC	1 cut(s)	261
BspT107I	GGYRCC	2 cut(s)	508, 610
BsrDI	GCAATG	1 cut(s)	795
BsrFI	RCCGGY	1 cut(s)	967
BssAI	RCCGGY	1 cut(s)	967
BssECI	CCNNGG	3 cut(s)	195, 696, 855
BssMI	GATC	3 cut(s)	310, 466, 740
BssT1I	CCWWGG	2 cut(s)	696, 855
Bst4CI	ACNGT	3 cut(s)	92, 674, 834
Bst6I	CTCTTC	1 cut(s)	261
BstAPI	GCANNNNNTGC	2 cut(s)	304, 350
BstC8I	GCNNGC	2 cut(s)	462, 873
BstDEI	CTNAG	4 cut(s)	213, 702, 937, 977
BstDSI	CCRYGG	1 cut(s)	855
BstENI	CCTNNNNNAGG	1 cut(s)	735
BstKTI	GATC	3 cut(s)	313, 469, 743
BstMAI	GTCTC	2 cut(s)	421, 978
BstMBI	GATC	3 cut(s)	310, 466, 740
BstMWI	GCNNNNNNNGC	5 cut(s)	175, 304, 350, 531, 872
BstSFI	CTRYAG	2 cut(s)	458, 767
BstV1I	GCAGC	5 cut(s)	162, 365, 753, 781, 875
BstV2I	GAAGAC	1 cut(s)	950
BstX2I	RGATCY	2 cut(s)	310, 466
BstXI	CCANNNNNNTGG	1 cut(s)	163
BstYI	RGATCY	2 cut(s)	310, 466
BsuI	GTATCC	1 cut(s)	721
BsuRI	GGCC	1 cut(s)	14
BtgI	CCRYGG	1 cut(s)	855
BtsI	GCAGTG	1 cut(s)	224
BtsIMutI	CAGTG	1 cut(s)	224
Cac8I	GCNNGC	2 cut(s)	462, 873
Cfr10I	RCCGGY	1 cut(s)	967
Csp6I	GTAC	2 cut(s)	9, 509
CviAII	CATG	1 cut(s)	856
CviQI	GTAC	2 cut(s)	9, 509
DdeI	CTNAG	4 cut(s)	213, 702, 937, 977
DpnI	GATC	3 cut(s)	312, 468, 742
DpnII	GATC	3 cut(s)	310, 466, 740
DraI	TTTAAA	1 cut(s)	573
Eam1104I	CTCTTC	1 cut(s)	261
EarI	CTCTTC	1 cut(s)	261
Ecl136II	GAGCTC	1 cut(s)	169
Eco130I	CCWWGG	2 cut(s)	696, 855
Eco24I	GRGCYC	1 cut(s)	171
Eco32I	GATATC	1 cut(s)	248
Eco53kI	GAGCTC	1 cut(s)	169
Eco57I	CTGAAG	1 cut(s)	782
Eco88I	CYCGRG	1 cut(s)	260
EcoICRI	GAGCTC	1 cut(s)	169
EcoNI	CCTNNNNNAGG	1 cut(s)	735
EcoRV	GATATC	1 cut(s)	248
EcoT14I	CCWWGG	2 cut(s)	696, 855
EcoT22I	ATGCAT	1 cut(s)	813
EcoT38I	GRGCYC	1 cut(s)	171
ErhI	CCWWGG	2 cut(s)	696, 855
FaeI	CATG	1 cut(s)	859
FaiI	YATR	7 cut(s)	235, 237, 380, 422, 491, 813, 857
FalI	AAGNNNNNCTT	2 cut(s)	275, 307
FatI	CATG	1 cut(s)	855
FauI	CCCGC	4 cut(s)	81, 122, 153, 180
Fnu4HI	GCNGC	6 cut(s)	176, 354, 720, 767, 770, 864
FriOI	GRGCYC	1 cut(s)	171
Fsp4HI	GCNGC	6 cut(s)	176, 354, 720, 767, 770, 864
FspBI	CTAG	2 cut(s)	357, 818
GluI	GCNGC	6 cut(s)	176, 354, 720, 767, 770, 864
HaeIII	GGCC	1 cut(s)	14
HapII	CCGG	1 cut(s)	968
Hin1II	CATG	1 cut(s)	859
HindIII	AAGCTT	2 cut(s)	681, 869
HinfI	GANTC	6 cut(s)	63, 108, 266, 329, 622, 935
HpaII	CCGG	1 cut(s)	968
HphI	GGTGA	3 cut(s)	16, 103, 178
Hpy166II	GTNNAC	2 cut(s)	648, 670
Hpy188I	TCNGA	6 cut(s)	68, 107, 642, 754, 762, 940
Hpy188III	TCNNGA	2 cut(s)	260, 738
Hpy8I	GTNNAC	2 cut(s)	648, 670
HpyAV	CCTTC	5 cut(s)	25, 193, 702, 924, 940
HpyCH4III	ACNGT	3 cut(s)	92, 674, 834
HpyF10VI	GCNNNNNNNGC	5 cut(s)	175, 304, 350, 531, 872
HpyF3I	CTNAG	4 cut(s)	213, 702, 937, 977
Hsp92II	CATG	1 cut(s)	859
KpnI	GGTACC	1 cut(s)	512
Kzo9I	GATC	3 cut(s)	310, 466, 740
LguI	GCTCTTC	1 cut(s)	261
LmnI	GCTCC	6 cut(s)	166, 174, 183, 407, 604, 793
Lsp1109I	GCAGC	5 cut(s)	162, 365, 753, 781, 875
LweI	GCATC	2 cut(s)	122, 353
MaeI	CTAG	2 cut(s)	357, 818
MalI	GATC	3 cut(s)	312, 468, 742
MboI	GATC	3 cut(s)	310, 466, 740
MboII	GAAGA	3 cut(s)	248, 350, 950
MflI	RGATCY	2 cut(s)	310, 466
MhlI	GDGCHC	1 cut(s)	171
MluCI	AATT	5 cut(s)	429, 452, 627, 779, 823
MlyI	GAGTC	3 cut(s)	275, 616, 929
MmeI	TCCRAC	2 cut(s)	233, 385
Mph1103I	ATGCAT	1 cut(s)	813
MseI	TTAA	4 cut(s)	530, 572, 782, 1005
MslI	CAYNNNNRTG	2 cut(s)	234, 494
MspA1I	CMGCKG	1 cut(s)	175
MspI	CCGG	1 cut(s)	968
MwoI	GCNNNNNNNGC	5 cut(s)	175, 304, 350, 531, 872
NcoI	CCATGG	1 cut(s)	855
NdeII	GATC	3 cut(s)	310, 466, 740
NlaIII	CATG	1 cut(s)	859
NlaIV	GGNNCC	5 cut(s)	207, 312, 510, 600, 612
NsiI	ATGCAT	1 cut(s)	813
PaeR7I	CTCGAG	1 cut(s)	260
PciSI	GCTCTTC	1 cut(s)	261
PfeI	GAWTC	3 cut(s)	63, 108, 329
PkrI	GCNGC	6 cut(s)	177, 355, 721, 768, 771, 865
PleI	GAGTC	3 cut(s)	274, 616, 929
PpsI	GAGTC	3 cut(s)	274, 616, 929
Psp124BI	GAGCTC	1 cut(s)	171
PspN4I	GGNNCC	5 cut(s)	207, 312, 510, 600, 612
PstI	CTGCAG	2 cut(s)	462, 771
PsuI	RGATCY	2 cut(s)	310, 466
RsaI	GTAC	2 cut(s)	10, 510
RsaNI	GTAC	2 cut(s)	9, 509
RseI	CAYNNNNRTG	2 cut(s)	234, 494
SacI	GAGCTC	1 cut(s)	171
SapI	GCTCTTC	1 cut(s)	261
SaqAI	TTAA	4 cut(s)	530, 572, 782, 1005
SatI	GCNGC	6 cut(s)	176, 354, 720, 767, 770, 864
Sau3AI	GATC	3 cut(s)	310, 466, 740
SchI	GAGTC	3 cut(s)	275, 616, 929
SduI	GDGCHC	1 cut(s)	171
SfaNI	GCATC	2 cut(s)	122, 353
SfcI	CTRYAG	2 cut(s)	458, 767
Sfr274I	CTCGAG	1 cut(s)	260
SgrAI	CRCCGGYG	1 cut(s)	967
SlaI	CTCGAG	1 cut(s)	260
SmiMI	CAYNNNNRTG	2 cut(s)	234, 494
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse9I	AATT	5 cut(s)	429, 452, 627, 779, 823
SsiI	CCGC	6 cut(s)	74, 115, 146, 173, 719, 965
SspMI	CTAG	2 cut(s)	357, 818
SstI	GAGCTC	1 cut(s)	171
StyI	CCWWGG	2 cut(s)	696, 855
TaaI	ACNGT	3 cut(s)	92, 674, 834
TaqI	TCGA	2 cut(s)	261, 933
TaqII	GACCGA	1 cut(s)	209
TasI	AATT	5 cut(s)	429, 452, 627, 779, 823
TauI	GCSGC	1 cut(s)	722
TfiI	GAWTC	3 cut(s)	63, 108, 329
Tru1I	TTAA	4 cut(s)	530, 572, 782, 1005
Tru9I	TTAA	4 cut(s)	530, 572, 782, 1005
TscAI	CASTG	1 cut(s)	231
TseI	GCWGC	5 cut(s)	175, 353, 766, 769, 863
TspDTI	ATGAA	5 cut(s)	252, 321, 693, 816, 908
TspGWI	ACGGA	2 cut(s)	665, 944
TspRI	CASTG	1 cut(s)	231
XagI	CCTNNNNNAGG	1 cut(s)	735
XapI	RAATTY	1 cut(s)	452
XhoI	CTCGAG	1 cut(s)	260
XspI	CTAG	2 cut(s)	357, 818
Zsp2I	ATGCAT	1 cut(s)	813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.