Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003413

Physical Location & Seq

Genomic Coordinates Forward (+)

36289203 .. 36293153

Gene Structure 3951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g36250.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGAATTGTACGGCCTTCAAATTCAATCCCACCACTCCGTTTGTCCTGGACAAGCTCGCTCAGTTTATACCAGCGACACGAATCCGAAACCCGCACCGGAATGTCTATAGTTCCGTTGGTTTCAGTTTCACCAGGAAGAAACTCAAACGATGCCGCCACTCGGCTCCTCCAAACGCCACCTCCTTGGTTGAATTGGAGCTCCCGCTCCTTCCCTTTCCCTTGAACGAGGTTCTAGTTCCCTCTGAGAGTAAGGCATTGCACTTATATGAAGCAAGGTATCTAGCTCTACTGGAGGAGTCGTTGAAAAGGAAGAAGCTTTTTGTGCATTTTGTGTTGGATCCTATCATCATTGACAATTCATCAGGAGAAGCATCCTTTGCGGCCAGAAATGGTTGCTTGGTTTTCATAGAAAATGTTGAGCGTTTAGAAGTTGGAGCACTAGTCTCTATTAGAGGAATTGGTCGTGTAAAAATTGTGAAATTTGTGCAGGCAGATCCTTACTTGAAAGGTGTTGTCGTACCTGTGCACGACAGGGTTCCTGAAGGCGAGAGCGGATTAGAACCAAAAGTTATGCAAGTAAAGGAAGCTCTATATAGTTTAAATAGCTTGGAAATCAAGCTGAAGGCCCCCAAGGAGGCACCGTTGCAGACTCGAATTGCCAATTCTCTAATGTGGAGTGAAAAGGAACTAGTCTTAGATTGTGATGAAGCTTTCATTCCTTCCTTGCCCGAGCGTGTTTCATTTGCAGCACTTCAACCGGTATCAGGATCAGGTGAATCGGAACTTGCGAAGCTACAGCTAGAGAAGTTAAGGGCAATGGAGCTCAAAGACACCGTCCAGAGGCTAGATAATTCCCTGGAATTTGTTAAAGATAATATCTCCATGGTTGCAGCCAAGCTCGCTATACAGTCAGTGGAGATGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LON_substr_bdg

Protein Analysis

309

Amino Acids

34.42

Weight (kDa)

8.25

Isoelectric Point (pI)

33.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35340 AT1G35340 AT1G35340 AT1G35340 AT1G35340 AT1G35340 AT1G35340
fragaria_vesca	FvH4_5g26640 FvH4_5g31600 FvH4_5g31600 FvH4_5g31600
malus_domestica	MD04G1056900.v1.1 MD14G1036300.v1.1 MD15G1405700.v1.1
prunus_persica	Prupe.1G555700_v2.0.a1 Prupe.1G555700_v2.0.a1 Prupe.1G555700_v2.0.a1 Prupe.1G555700_v2.0.a1 Prupe.1G555700_v2.0.a1 Prupe.1G555700_v2.0.a1 Prupe.1G555700_v2.0.a1 Prupe.1G555700_v2.0.a1 Prupe.1G555700_v2.0.a1
pyrus_communis	pycom04g05060 pycom15g36250
rosa_chinensis	RchiOBHm_Chr7g0227131
rosa_laevigata	RLG00000001666
rosa_multiflora	Rmu_sc0003153.1_g000021
rosa_roxburghii	Rroxscaffold_3G00232290
rosa_rugosa	Rorug07G0240900
rosa_samantha	Rh7AG390700 Rh7BG375700 Rh7CG409700 Rh7DG388000
rosa_wichuraiana	Rw0G014520 Rw7G032680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	637
AccBSI	CCGCTC	2 cut(s)	205, 552
AciI	CCGC	5 cut(s)	92, 154, 203, 380, 552
AclWI	GGATC	4 cut(s)	332, 345, 488, 775
AcoI	YGGCCR	1 cut(s)	381
AcsI	RAATTY	3 cut(s)	20, 479, 860
AcuI	CTGAAG	2 cut(s)	561, 641
AfaI	GTAC	2 cut(s)	10, 519
AfiI	CCNNNNNNNGG	4 cut(s)	160, 634, 764, 840
AgeI	ACCGGT	1 cut(s)	757
AgsI	TTSAA	7 cut(s)	19, 25, 191, 223, 304, 505, 755
AhlI	ACTAGT	2 cut(s)	439, 688
AjnI	CCWGG	3 cut(s)	45, 131, 855
Alw21I	GWGCWC	4 cut(s)	201, 439, 528, 825
Alw26I	GTCTC	1 cut(s)	448
Alw44I	GTGCAC	1 cut(s)	524
AlwI	GGATC	4 cut(s)	332, 345, 488, 775
Ama87I	CYCGRG	1 cut(s)	728
AoxI	GGCC	3 cut(s)	12, 381, 624
ApaLI	GTGCAC	1 cut(s)	524
ApeKI	GCWGC	2 cut(s)	746, 890
ApoI	RAATTY	3 cut(s)	20, 479, 860
ArsI	GACNNNNNNTTYG	2 cut(s)	819, 851
AsiGI	ACCGGT	1 cut(s)	757
AspS9I	GGNCC	1 cut(s)	625
AsuHPI	GGTGA	2 cut(s)	121, 785
AvaI	CYCGRG	1 cut(s)	728
BaeGI	GKGCMC	1 cut(s)	528
BamHI	GGATCC	1 cut(s)	337
BanI	GGYRCC	1 cut(s)	637
BanII	GRGCYC	2 cut(s)	201, 825
Bbv12I	GWGCWC	4 cut(s)	201, 439, 528, 825
BbvI	GCAGC	2 cut(s)	758, 902
BccI	CCATC	1 cut(s)	913
BceAI	ACGGC	1 cut(s)	27
BciT130I	CCWGG	3 cut(s)	47, 133, 857
BcoDI	GTCTC	1 cut(s)	448
BcuI	ACTAGT	2 cut(s)	439, 688
BfaI	CTAG	6 cut(s)	233, 281, 440, 689, 800, 845
BfmI	CTRYAG	2 cut(s)	106, 794
BisI	GCNGC	4 cut(s)	154, 381, 747, 891
BlsI	GCNGC	4 cut(s)	155, 382, 748, 892
Bme1390I	CCNGG	3 cut(s)	47, 133, 857
BmeT110I	CYCGRG	1 cut(s)	728
BmgT120I	GGNCC	1 cut(s)	625
BmiI	GGNNCC	5 cut(s)	165, 339, 537, 627, 639
BmrFI	CCNGG	3 cut(s)	47, 133, 857
BmsI	GCATC	2 cut(s)	140, 380
BpmI	CTGGAG	1 cut(s)	311
BsaJI	CCNNGG	4 cut(s)	183, 630, 855, 882
BsaWI	WCCGGW	2 cut(s)	96, 757
BsaXI	ACNNNNNCTCC	9 cut(s)	164, 194, 284, 314, 426, 456, 626, 656, 908
Bsc4I	CCNNNNNNNGG	4 cut(s)	160, 634, 764, 840
Bse118I	RCCGGY	1 cut(s)	757
Bse1I	ACTGG	1 cut(s)	294
Bse3DI	GCAATG	2 cut(s)	254, 822
BseBI	CCWGG	3 cut(s)	47, 133, 857
BseDI	CCNNGG	4 cut(s)	183, 630, 855, 882
BseGI	GGATG	1 cut(s)	371
BseLI	CCNNNNNNNGG	4 cut(s)	160, 634, 764, 840
BseMI	GCAATG	2 cut(s)	254, 822
BseMII	CTCAG	2 cut(s)	74, 234
BseNI	ACTGG	1 cut(s)	294
BseRI	GAGGAG	2 cut(s)	156, 308
BseSI	GKGCMC	1 cut(s)	528
BseXI	GCAGC	2 cut(s)	758, 902
BsgI	GTGCAG	1 cut(s)	506
BshFI	GGCC	3 cut(s)	14, 383, 626
BshNI	GGYRCC	1 cut(s)	637
BshTI	ACCGGT	1 cut(s)	757
BsiHKAI	GWGCWC	4 cut(s)	201, 439, 528, 825
BsiHKCI	CYCGRG	1 cut(s)	728
BsiSI	CCGG	2 cut(s)	97, 758
BslI	CCNNNNNNNGG	4 cut(s)	160, 634, 764, 840
BsmAI	GTCTC	1 cut(s)	448
BsnI	GGCC	3 cut(s)	14, 383, 626
BsoBI	CYCGRG	1 cut(s)	728
Bsp1286I	GDGCHC	4 cut(s)	201, 439, 528, 825
Bsp143I	GATC	3 cut(s)	337, 493, 767
Bsp19I	CCATGG	1 cut(s)	882
BspACI	CCGC	5 cut(s)	92, 154, 203, 380, 552
BspANI	GGCC	3 cut(s)	14, 383, 626
BspCNI	CTCAG	2 cut(s)	73, 235
BspLI	GGNNCC	5 cut(s)	165, 339, 537, 627, 639
BspPI	GGATC	4 cut(s)	332, 345, 488, 775
BspT107I	GGYRCC	1 cut(s)	637
BsrBI	CCGCTC	2 cut(s)	205, 552
BsrDI	GCAATG	2 cut(s)	254, 822
BsrFI	RCCGGY	1 cut(s)	757
BsrI	ACTGG	1 cut(s)	294
BssAI	RCCGGY	1 cut(s)	757
BssECI	CCNNGG	4 cut(s)	183, 630, 855, 882
BssMI	GATC	3 cut(s)	337, 493, 767
BssT1I	CCWWGG	3 cut(s)	183, 630, 882
Bst2UI	CCWGG	3 cut(s)	47, 133, 857
Bst4CI	ACNGT	3 cut(s)	642, 835, 909
BstAPI	GCANNNNNTGC	1 cut(s)	377
BstC8I	GCNNGC	3 cut(s)	57, 489, 900
BstDEI	CTNAG	3 cut(s)	60, 243, 694
BstDSI	CCRYGG	1 cut(s)	882
BstF5I	GGATG	1 cut(s)	371
BstKTI	GATC	3 cut(s)	340, 496, 770
BstMAI	GTCTC	1 cut(s)	448
BstMBI	GATC	3 cut(s)	337, 493, 767
BstMWI	GCNNNNNNNGC	3 cut(s)	322, 377, 899
BstNI	CCWGG	3 cut(s)	47, 133, 857
BstSCI	CCNGG	3 cut(s)	45, 131, 855
BstSFI	CTRYAG	2 cut(s)	106, 794
BstSLI	GKGCMC	1 cut(s)	528
BstV1I	GCAGC	2 cut(s)	758, 902
BstX2I	RGATCY	2 cut(s)	337, 493
BstXI	CCANNNNNNTGG	1 cut(s)	184
BstYI	RGATCY	2 cut(s)	337, 493
BsuRI	GGCC	3 cut(s)	14, 383, 626
BtgI	CCRYGG	1 cut(s)	882
BtsCI	GGATG	1 cut(s)	371
BtsIMutI	CAGTG	1 cut(s)	918
Cac8I	GCNNGC	3 cut(s)	57, 489, 900
Cfr10I	RCCGGY	1 cut(s)	757
Cfr13I	GGNCC	1 cut(s)	625
Csp6I	GTAC	2 cut(s)	9, 518
CspAI	ACCGGT	1 cut(s)	757
CspCI	CAANNNNNGTGG	2 cut(s)	22, 57
CviAII	CATG	1 cut(s)	883
CviQI	GTAC	2 cut(s)	9, 518
DdeI	CTNAG	3 cut(s)	60, 243, 694
DpnI	GATC	3 cut(s)	339, 495, 769
DpnII	GATC	3 cut(s)	337, 493, 767
DraI	TTTAAA	1 cut(s)	600
EaeI	YGGCCR	1 cut(s)	381
Ecl136II	GAGCTC	2 cut(s)	199, 823
Eco130I	CCWWGG	3 cut(s)	183, 630, 882
Eco24I	GRGCYC	2 cut(s)	201, 825
Eco53kI	GAGCTC	2 cut(s)	199, 823
Eco57I	CTGAAG	2 cut(s)	561, 641
Eco88I	CYCGRG	1 cut(s)	728
EcoICRI	GAGCTC	2 cut(s)	199, 823
EcoO109I	RGGNCCY	1 cut(s)	625
EcoRII	CCWGG	3 cut(s)	45, 131, 855
EcoT14I	CCWWGG	3 cut(s)	183, 630, 882
EcoT38I	GRGCYC	2 cut(s)	201, 825
ErhI	CCWWGG	3 cut(s)	183, 630, 882
FaeI	CATG	1 cut(s)	886
FatI	CATG	1 cut(s)	882
FauI	CCCGC	2 cut(s)	99, 210
Fnu4HI	GCNGC	4 cut(s)	154, 381, 747, 891
FokI	GGATG	1 cut(s)	358
FriOI	GRGCYC	2 cut(s)	201, 825
Fsp4HI	GCNGC	4 cut(s)	154, 381, 747, 891
FspBI	CTAG	6 cut(s)	233, 281, 440, 689, 800, 845
GluI	GCNGC	4 cut(s)	154, 381, 747, 891
GsuI	CTGGAG	1 cut(s)	311
HaeIII	GGCC	3 cut(s)	14, 383, 626
HapII	CCGG	2 cut(s)	97, 758
Hin1II	CATG	1 cut(s)	886
HindIII	AAGCTT	2 cut(s)	314, 708
HinfI	GANTC	4 cut(s)	81, 296, 649, 776
HpaII	CCGG	2 cut(s)	97, 758
HphI	GGTGA	2 cut(s)	121, 785
Hpy166II	GTNNAC	1 cut(s)	526
Hpy188I	TCNGA	3 cut(s)	86, 244, 781
Hpy188III	TCNNGA	4 cut(s)	363, 539, 765, 838
Hpy8I	GTNNAC	1 cut(s)	526
HpyAV	CCTTC	5 cut(s)	25, 218, 536, 616, 729
HpyCH4III	ACNGT	3 cut(s)	642, 835, 909
HpyCH4V	TGCA	8 cut(s)	259, 325, 487, 526, 574, 646, 746, 890
HpyF10VI	GCNNNNNNNGC	3 cut(s)	322, 377, 899
HpyF3I	CTNAG	3 cut(s)	60, 243, 694
Hsp92II	CATG	1 cut(s)	886
Kzo9I	GATC	3 cut(s)	337, 493, 767
LmnI	GCTCC	6 cut(s)	169, 196, 204, 210, 434, 820
Lsp1109I	GCAGC	2 cut(s)	758, 902
LweI	GCATC	2 cut(s)	140, 380
MaeI	CTAG	6 cut(s)	233, 281, 440, 689, 800, 845
MalI	GATC	3 cut(s)	339, 495, 769
MbiI	CCGCTC	2 cut(s)	205, 552
MboI	GATC	3 cut(s)	337, 493, 767
MboII	GAAGA	2 cut(s)	148, 322
MflI	RGATCY	2 cut(s)	337, 493
MhlI	GDGCHC	4 cut(s)	201, 439, 528, 825
MlyI	GAGTC	2 cut(s)	305, 643
MmeI	TCCRAC	2 cut(s)	315, 412
MnlI	CCTC	8 cut(s)	177, 190, 220, 250, 286, 446, 628, 834
MseI	TTAA	3 cut(s)	599, 809, 867
MslI	CAYNNNNRTG	2 cut(s)	99, 264
MspI	CCGG	2 cut(s)	97, 758
MspR9I	CCNGG	3 cut(s)	47, 133, 857
MvaI	CCWGG	3 cut(s)	47, 133, 857
MwoI	GCNNNNNNNGC	3 cut(s)	322, 377, 899
NcoI	CCATGG	1 cut(s)	882
NdeII	GATC	3 cut(s)	337, 493, 767
NlaIII	CATG	1 cut(s)	886
NlaIV	GGNNCC	5 cut(s)	165, 339, 537, 627, 639
NmeAIII	GCCGAG	1 cut(s)	140
PcsI	WCGNNNNNNNCGW	1 cut(s)	785
PfeI	GAWTC	2 cut(s)	81, 776
PflFI	GACNNNGTC	1 cut(s)	833
PfoI	TCCNGGA	1 cut(s)	45
PinAI	ACCGGT	1 cut(s)	757
PkrI	GCNGC	4 cut(s)	155, 382, 748, 892
PleI	GAGTC	2 cut(s)	304, 643
PpsI	GAGTC	2 cut(s)	304, 643
Psp124BI	GAGCTC	2 cut(s)	201, 825
Psp6I	CCWGG	3 cut(s)	45, 131, 855
PspGI	CCWGG	3 cut(s)	45, 131, 855
PspN4I	GGNNCC	5 cut(s)	165, 339, 537, 627, 639
PspPI	GGNCC	1 cut(s)	625
PsuI	RGATCY	2 cut(s)	337, 493
PsyI	GACNNNGTC	1 cut(s)	833
RsaI	GTAC	2 cut(s)	10, 519
RsaNI	GTAC	2 cut(s)	9, 518
RseI	CAYNNNNRTG	2 cut(s)	99, 264
SacI	GAGCTC	2 cut(s)	201, 825
SaqAI	TTAA	3 cut(s)	599, 809, 867
SatI	GCNGC	4 cut(s)	154, 381, 747, 891
Sau3AI	GATC	3 cut(s)	337, 493, 767
Sau96I	GGNCC	1 cut(s)	625
SchI	GAGTC	2 cut(s)	305, 643
ScrFI	CCNGG	3 cut(s)	47, 133, 857
SduI	GDGCHC	4 cut(s)	201, 439, 528, 825
SfaNI	GCATC	2 cut(s)	140, 380
SfcI	CTRYAG	2 cut(s)	106, 794
SmiMI	CAYNNNNRTG	2 cut(s)	99, 264
SpeI	ACTAGT	2 cut(s)	439, 688
SsiI	CCGC	5 cut(s)	92, 154, 203, 380, 552
SspMI	CTAG	6 cut(s)	233, 281, 440, 689, 800, 845
SstI	GAGCTC	2 cut(s)	201, 825
StyD4I	CCNGG	3 cut(s)	45, 131, 855
StyI	CCWWGG	3 cut(s)	183, 630, 882
TaaI	ACNGT	3 cut(s)	642, 835, 909
TaqI	TCGA	1 cut(s)	652
TauI	GCSGC	2 cut(s)	156, 383
TfiI	GAWTC	2 cut(s)	81, 776
Tru1I	TTAA	3 cut(s)	599, 809, 867
Tru9I	TTAA	3 cut(s)	599, 809, 867
TscAI	CASTG	1 cut(s)	918
TseI	GCWGC	2 cut(s)	746, 890
TspDTI	ATGAA	7 cut(s)	17, 282, 348, 394, 703, 720, 729
TspGWI	ACGGA	2 cut(s)	27, 103
TspRI	CASTG	1 cut(s)	918
Tth111I	GACNNNGTC	1 cut(s)	833
VneI	GTGCAC	1 cut(s)	524
XapI	RAATTY	3 cut(s)	20, 479, 860
XspI	CTAG	6 cut(s)	233, 281, 440, 689, 800, 845

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.