Rh7CG409700

ATP-dependent protease La (LON) substrate-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0003413
Physical Location & Seq
Forward (+)
52606192 .. 52611117
4926 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG409700.1

Sequence Viewer

Length: 762 bp
ATGACTTGTACGGCCTTCAATCTCACCACCAGCAGCCCCTTTCTCCCTGCAAGGACGACCCGAATCCGAAACCCGCACCCGACCCTCCACCGTTTCCTCCATTTCGGTTTCACCCGCCCGAAGCAGAAACGATGCCGTTTCTCGCCGCCAAACGCCACCTCCTTGGAGCTCCCGCTGCTCCCCTTCACCTTGACCGAGGTTCTGGTTCCAACTGAGAGTAAAACACTGCATTTATATGAAGCCAGATATCTTGCTCTTCTCGAGGAGTCATTGTTGAGGAACAAGAAGTTCTTTGTGCATTTTGTGCTGGATCCTATCATTATTGATGATTCATTGGAAGAAGCATCTTTTGCAGCTAGAAATGGTTGTTTGGTATTTATAGAAAATGTTGAGAGATTAGAAGTTGGAGCATTAGTCTCTATAAGAGGAATTGGTCGTGTAAAGATTATCAAATTTCTGCAGGCAGATCCTTACTTGAAAGGTGTTGTCATACCCGTGCAGGACAGGGTACCTGATAGTGTAAGCAGATTAAGCCCCAAAGTTTTTCAAGTAAAAGAGGCTCTGTGTAGTTTAAATAGTTTGGAAATCAAACTAAAGGCTCCAAAGGAGGCACCTTTGCAGACTCAAATTGCCAACTCTCTGATGTGGACGGAAAAGGAACTACAAGTGGACTGTGATGAAGCTTTCCTTCCTTCCTTGGCTGAGCGTGTATCCTTTGCGGCACTTCAACCTGTATCAGGTAGTTTCCCTTGTGCATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LON_substr_bdg

Protein Analysis

253

Amino Acids

28.41

Weight (kDa)

8.68

Isoelectric Point (pI)

46.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LON_substr_bdg PF02190 56 - 176 3.6e-10 ATP-dependent protease La (LON) substrate-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 508
AccB1I GGYRCC 2 cut(s) 508, 610
AciI CCGC 5 cut(s) 74, 115, 146, 173, 719
AclWI GGATC 3 cut(s) 305, 318, 461
AcsI RAATTY 1 cut(s) 452
AfaI GTAC 2 cut(s) 10, 510
AfiI CCNNNNNNNGG 1 cut(s) 737
AgsI TTSAA 4 cut(s) 19, 478, 548, 728
AluBI AGCT 3 cut(s) 169, 356, 683
AluI AGCT 3 cut(s) 169, 356, 683
Alw21I GWGCWC 1 cut(s) 171
Alw26I GTCTC 1 cut(s) 421
AlwI GGATC 3 cut(s) 305, 318, 461
Ama87I CYCGRG 1 cut(s) 260
AoxI GGCC 1 cut(s) 12
ApeKI GCWGC 3 cut(s) 33, 175, 353
ApoI RAATTY 1 cut(s) 452
Asp718I GGTACC 1 cut(s) 508
AsuHPI GGTGA 3 cut(s) 16, 103, 178
AvaI CYCGRG 1 cut(s) 260
BamHI GGATCC 1 cut(s) 310
BanI GGYRCC 2 cut(s) 508, 610
BanII GRGCYC 1 cut(s) 171
Bbv12I GWGCWC 1 cut(s) 171
BbvI GCAGC 3 cut(s) 45, 162, 365
BceAI ACGGC 2 cut(s) 27, 120
BciVI GTATCC 1 cut(s) 721
BcoDI GTCTC 1 cut(s) 421
BfaI CTAG 1 cut(s) 357
BfmI CTRYAG 1 cut(s) 458
BfuI GTATCC 1 cut(s) 721
BisI GCNGC 5 cut(s) 34, 146, 176, 354, 720
BlpI GCTNAGC 1 cut(s) 702
BlsI GCNGC 5 cut(s) 35, 147, 177, 355, 721
BmeT110I CYCGRG 1 cut(s) 260
BmiI GGNNCC 5 cut(s) 207, 312, 510, 600, 612
BmsI GCATC 2 cut(s) 122, 353
Bpu1102I GCTNAGC 1 cut(s) 702
BsaJI CCNNGG 3 cut(s) 162, 195, 696
BsaXI ACNNNNNCTCC 6 cut(s) 143, 173, 257, 287, 399, 429
Bsc4I CCNNNNNNNGG 1 cut(s) 737
BseDI CCNNGG 3 cut(s) 162, 195, 696
BseLI CCNNNNNNNGG 1 cut(s) 737
BseMII CTCAG 2 cut(s) 204, 693
BseRI GAGGAG 1 cut(s) 278
BseXI GCAGC 3 cut(s) 45, 162, 365
BsgI GTGCAG 1 cut(s) 518
BshFI GGCC 1 cut(s) 14
BshNI GGYRCC 2 cut(s) 508, 610
BsiHKAI GWGCWC 1 cut(s) 171
BsiHKCI CYCGRG 1 cut(s) 260
BslI CCNNNNNNNGG 1 cut(s) 737
BsmAI GTCTC 1 cut(s) 421
BsnI GGCC 1 cut(s) 14
BsoBI CYCGRG 1 cut(s) 260
Bsp1286I GDGCHC 1 cut(s) 171
Bsp143I GATC 2 cut(s) 310, 466
Bsp1720I GCTNAGC 1 cut(s) 702
BspACI CCGC 5 cut(s) 74, 115, 146, 173, 719
BspANI GGCC 1 cut(s) 14
BspCNI CTCAG 2 cut(s) 205, 694
BspLI GGNNCC 5 cut(s) 207, 312, 510, 600, 612
BspMAI CTGCAG 1 cut(s) 462
BspPI GGATC 3 cut(s) 305, 318, 461
BspQI GCTCTTC 1 cut(s) 261
BspT107I GGYRCC 2 cut(s) 508, 610
BssECI CCNNGG 3 cut(s) 162, 195, 696
BssMI GATC 2 cut(s) 310, 466
BssT1I CCWWGG 2 cut(s) 162, 696
Bst4CI ACNGT 2 cut(s) 92, 674
Bst6I CTCTTC 1 cut(s) 261
BstAPI GCANNNNNTGC 2 cut(s) 304, 350
BstC8I GCNNGC 1 cut(s) 462
BstDEI CTNAG 2 cut(s) 213, 702
BstENI CCTNNNNNAGG 1 cut(s) 735
BstKTI GATC 2 cut(s) 313, 469
BstMAI GTCTC 1 cut(s) 421
BstMBI GATC 2 cut(s) 310, 466
BstMWI GCNNNNNNNGC 4 cut(s) 175, 304, 350, 531
BstNSI RCATGY 1 cut(s) 759
BstSFI CTRYAG 1 cut(s) 458
BstV1I GCAGC 3 cut(s) 45, 162, 365
BstX2I RGATCY 2 cut(s) 310, 466
BstXI CCANNNNNNTGG 1 cut(s) 163
BstYI RGATCY 2 cut(s) 310, 466
BsuI GTATCC 1 cut(s) 721
BsuRI GGCC 1 cut(s) 14
BtsI GCAGTG 1 cut(s) 224
BtsIMutI CAGTG 1 cut(s) 224
Cac8I GCNNGC 1 cut(s) 462
Csp6I GTAC 2 cut(s) 9, 509
CviAII CATG 1 cut(s) 756
CviQI GTAC 2 cut(s) 9, 509
DdeI CTNAG 2 cut(s) 213, 702
DpnI GATC 2 cut(s) 312, 468
DpnII GATC 2 cut(s) 310, 466
DraI TTTAAA 1 cut(s) 573
Eam1104I CTCTTC 1 cut(s) 261
EarI CTCTTC 1 cut(s) 261
Ecl136II GAGCTC 1 cut(s) 169
Eco130I CCWWGG 2 cut(s) 162, 696
Eco24I GRGCYC 1 cut(s) 171
Eco32I GATATC 1 cut(s) 248
Eco53kI GAGCTC 1 cut(s) 169
Eco88I CYCGRG 1 cut(s) 260
EcoICRI GAGCTC 1 cut(s) 169
EcoNI CCTNNNNNAGG 1 cut(s) 735
EcoRV GATATC 1 cut(s) 248
EcoT14I CCWWGG 2 cut(s) 162, 696
EcoT38I GRGCYC 1 cut(s) 171
ErhI CCWWGG 2 cut(s) 162, 696
FaeI CATG 1 cut(s) 759
FaiI YATR 6 cut(s) 235, 237, 380, 422, 491, 757
FalI AAGNNNNNCTT 4 cut(s) 275, 307, 672, 704
FatI CATG 1 cut(s) 755
FauI CCCGC 3 cut(s) 81, 122, 180
Fnu4HI GCNGC 5 cut(s) 34, 146, 176, 354, 720
FriOI GRGCYC 1 cut(s) 171
Fsp4HI GCNGC 5 cut(s) 34, 146, 176, 354, 720
FspBI CTAG 1 cut(s) 357
GluI GCNGC 5 cut(s) 34, 146, 176, 354, 720
HaeIII GGCC 1 cut(s) 14
Hin1II CATG 1 cut(s) 759
HindIII AAGCTT 1 cut(s) 681
HinfI GANTC 4 cut(s) 63, 266, 329, 622
HphI GGTGA 3 cut(s) 16, 103, 178
Hpy166II GTNNAC 2 cut(s) 648, 670
Hpy188I TCNGA 2 cut(s) 68, 642
Hpy188III TCNNGA 1 cut(s) 260
Hpy8I GTNNAC 2 cut(s) 648, 670
HpyAV CCTTC 4 cut(s) 25, 193, 698, 702
HpyCH4III ACNGT 2 cut(s) 92, 674
HpyCH4V TGCA 8 cut(s) 50, 229, 298, 353, 460, 499, 619, 755
HpyF10VI GCNNNNNNNGC 4 cut(s) 175, 304, 350, 531
HpyF3I CTNAG 2 cut(s) 213, 702
Hsp92II CATG 1 cut(s) 759
KpnI GGTACC 1 cut(s) 512
Kzo9I GATC 2 cut(s) 310, 466
LguI GCTCTTC 1 cut(s) 261
LmnI GCTCC 5 cut(s) 166, 174, 183, 407, 604
Lsp1109I GCAGC 3 cut(s) 45, 162, 365
LweI GCATC 2 cut(s) 122, 353
MaeI CTAG 1 cut(s) 357
MalI GATC 2 cut(s) 312, 468
MboI GATC 2 cut(s) 310, 466
MboII GAAGA 2 cut(s) 248, 350
MflI RGATCY 2 cut(s) 310, 466
MhlI GDGCHC 1 cut(s) 171
MluCI AATT 3 cut(s) 429, 452, 627
MlyI GAGTC 2 cut(s) 275, 616
MmeI TCCRAC 2 cut(s) 233, 385
MnlI CCTC 9 cut(s) 95, 107, 169, 190, 256, 270, 419, 550, 601
MseI TTAA 2 cut(s) 530, 572
MslI CAYNNNNRTG 2 cut(s) 234, 494
MspA1I CMGCKG 1 cut(s) 175
MwoI GCNNNNNNNGC 4 cut(s) 175, 304, 350, 531
NdeII GATC 2 cut(s) 310, 466
NlaIII CATG 1 cut(s) 759
NlaIV GGNNCC 5 cut(s) 207, 312, 510, 600, 612
NspI RCATGY 1 cut(s) 759
PaeR7I CTCGAG 1 cut(s) 260
PciSI GCTCTTC 1 cut(s) 261
PfeI GAWTC 2 cut(s) 63, 329
PkrI GCNGC 5 cut(s) 35, 147, 177, 355, 721
PleI GAGTC 2 cut(s) 274, 616
PpsI GAGTC 2 cut(s) 274, 616
Psp124BI GAGCTC 1 cut(s) 171
PspN4I GGNNCC 5 cut(s) 207, 312, 510, 600, 612
PstI CTGCAG 1 cut(s) 462
PsuI RGATCY 2 cut(s) 310, 466
RsaI GTAC 2 cut(s) 10, 510
RsaNI GTAC 2 cut(s) 9, 509
RseI CAYNNNNRTG 2 cut(s) 234, 494
SacI GAGCTC 1 cut(s) 171
SapI GCTCTTC 1 cut(s) 261
SaqAI TTAA 2 cut(s) 530, 572
SatI GCNGC 5 cut(s) 34, 146, 176, 354, 720
Sau3AI GATC 2 cut(s) 310, 466
SchI GAGTC 2 cut(s) 275, 616
SduI GDGCHC 1 cut(s) 171
SfaNI GCATC 2 cut(s) 122, 353
SfcI CTRYAG 1 cut(s) 458
Sfr274I CTCGAG 1 cut(s) 260
SlaI CTCGAG 1 cut(s) 260
SmiMI CAYNNNNRTG 2 cut(s) 234, 494
SmlI CTYRAG 1 cut(s) 260
SmoI CTYRAG 1 cut(s) 260
Sse9I AATT 3 cut(s) 429, 452, 627
SsiI CCGC 5 cut(s) 74, 115, 146, 173, 719
SspMI CTAG 1 cut(s) 357
SstI GAGCTC 1 cut(s) 171
StyI CCWWGG 2 cut(s) 162, 696
TaaI ACNGT 2 cut(s) 92, 674
TaqI TCGA 1 cut(s) 261
TaqII GACCGA 1 cut(s) 209
TasI AATT 3 cut(s) 429, 452, 627
TauI GCSGC 2 cut(s) 148, 722
TfiI GAWTC 2 cut(s) 63, 329
Tru1I TTAA 2 cut(s) 530, 572
Tru9I TTAA 2 cut(s) 530, 572
TscAI CASTG 1 cut(s) 231
TseI GCWGC 3 cut(s) 33, 175, 353
TspDTI ATGAA 3 cut(s) 252, 321, 693
TspGWI ACGGA 1 cut(s) 665
TspRI CASTG 1 cut(s) 231
XagI CCTNNNNNAGG 1 cut(s) 735
XapI RAATTY 1 cut(s) 452
XceI RCATGY 1 cut(s) 759
XhoI CTCGAG 1 cut(s) 260
XspI CTAG 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.