Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003413

Physical Location & Seq

Genomic Coordinates Reverse (-)

45350832 .. 45355221

Gene Structure 4390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G555700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGAATTGTACGGCCTTCAATCTCACGCCCAGTAGTCCCTTTTTCCCGGAGAAGAATTCCCGCCTTATAGCAAGGACCCGGACCCATGATTTCGGTTTTACCGGGAAAAGACTGAAACGATGCCGCATGGTTGCAATGGCCACCTCCTTGGAGTTGGAGCTCCCGCTCCTTCCCTTCAGCTTGAACGAGGTTCTTGTTCCCTCTGAGAGTAAAACATTGCACTTATATGAAGCAAGGTATCTGGGTCTACTGGAGGAGTCATTGATGAGGAAGAACAAGCTTTTTGTGCATTTTGTGTTGGATCCTATCATTGTTGAAAATTCAACAGAAGAAGCATCCTTTGCAGCCAGAAATGGTTGTTTGGTTTTTATAGAAAACGTTGAGCGTTTAGAAGTTGGAGCATTAGTCTCAATTAGAGGAATTGGTCGTGTAAAGATTGTGAAATTTGTGCAGGCAGATCCTTACTTGAAAGGTGTTGTCATACCTGTACAGGACAGGGTTCCTGACAGTGTCAGCAAATTACACCCAAAAGTTATGCAAGTAAAAGAGGCTCTTTATAGTTTAAATAGTTTGGAAATCAAACTCAAGGCCCCAAAGGAGGCACAGTTGCAAACTAGAATTGCCAATTCTCTAATGTGGACTGAAAAGGAACTACTCTTACATTGTAATGAAGCTTTCTTTCCTTCATTGGCTGAGCGTGTATCCTTCGCAGCACTTCAACCGATATCAGGATCAACTGAATCGGAACTTTTGAAGCTGCAGCAAGAGAAGTTAAGGGCAATGGATCTCAGAGACTCCTTCCAGAGGCTAGACAATTCCCTAGAATTTGTTAAAGATAATATCTCCAGGGTTGCAGCCAAGCTGGCTATACAATCAGTAGAGATGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LON_substr_bdg

Protein Analysis

297

Amino Acids

33.5

Weight (kDa)

8.81

Isoelectric Point (pI)

38.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35340 AT1G35340 AT1G35340 AT1G35340 AT1G35340 AT1G35340 AT1G35340
fragaria_vesca	FvH4_5g26640 FvH4_5g31600 FvH4_5g31600 FvH4_5g31600
malus_domestica	MD04G1056900.v1.1 MD14G1036300.v1.1 MD15G1405700.v1.1
prunus_persica	Prupe.1G555700_v2.0.a1 Prupe.1G555700_v2.0.a1 Prupe.1G555700_v2.0.a1 Prupe.1G555700_v2.0.a1 Prupe.1G555700_v2.0.a1 Prupe.1G555700_v2.0.a1 Prupe.1G555700_v2.0.a1 Prupe.1G555700_v2.0.a1 Prupe.1G555700_v2.0.a1
pyrus_communis	pycom04g05060 pycom15g36250
rosa_chinensis	RchiOBHm_Chr7g0227131
rosa_laevigata	RLG00000001666
rosa_multiflora	Rmu_sc0003153.1_g000021
rosa_roxburghii	Rroxscaffold_3G00232290
rosa_rugosa	Rorug07G0240900
rosa_samantha	Rh7AG390700 Rh7BG375700 Rh7CG409700 Rh7DG388000
rosa_wichuraiana	Rw0G014520 Rw7G032680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	166
AccI	GTMKAC	1 cut(s)	247
AciI	CCGC	3 cut(s)	61, 124, 164
AclI	AACGTT	1 cut(s)	378
AclWI	GGATC	5 cut(s)	296, 309, 452, 739, 792
AcoI	YGGCCR	1 cut(s)	138
AcsI	RAATTY	4 cut(s)	55, 319, 443, 824
AcuI	CTGAAG	1 cut(s)	160
AfaI	GTAC	2 cut(s)	10, 489
AfiI	CCNNNNNNNGG	3 cut(s)	598, 728, 804
AgsI	TTSAA	7 cut(s)	19, 184, 317, 324, 469, 719, 754
AjnI	CCWGG	1 cut(s)	845
AluBI	AGCT	6 cut(s)	160, 180, 280, 674, 757, 862
AluI	AGCT	6 cut(s)	160, 180, 280, 674, 757, 862
Alw21I	GWGCWC	1 cut(s)	162
Alw26I	GTCTC	2 cut(s)	412, 786
AlwI	GGATC	5 cut(s)	296, 309, 452, 739, 792
AoxI	GGCC	3 cut(s)	12, 138, 588
ApeKI	GCWGC	5 cut(s)	344, 710, 757, 760, 854
ApoI	RAATTY	4 cut(s)	55, 319, 443, 824
AspS9I	GGNCC	3 cut(s)	75, 81, 589
AsuC2I	CCSGG	3 cut(s)	47, 79, 103
AvaII	GGWCC	2 cut(s)	75, 81
BalI	TGGCCA	1 cut(s)	140
BamHI	GGATCC	1 cut(s)	301
BanII	GRGCYC	1 cut(s)	162
Bbv12I	GWGCWC	1 cut(s)	162
BbvI	GCAGC	5 cut(s)	356, 722, 744, 772, 866
BceAI	ACGGC	1 cut(s)	27
BciT130I	CCWGG	1 cut(s)	847
BciVI	GTATCC	1 cut(s)	712
BcnI	CCSGG	3 cut(s)	47, 79, 103
BcoDI	GTCTC	2 cut(s)	412, 786
BfaI	CTAG	3 cut(s)	615, 809, 821
BfmI	CTRYAG	1 cut(s)	758
BfuI	GTATCC	1 cut(s)	712
BglI	GCCNNNNNGGC	1 cut(s)	863
BisI	GCNGC	6 cut(s)	124, 345, 711, 758, 761, 855
BlpI	GCTNAGC	1 cut(s)	693
BlsI	GCNGC	6 cut(s)	125, 346, 712, 759, 762, 856
Bme1390I	CCNGG	4 cut(s)	47, 79, 103, 847
Bme18I	GGWCC	2 cut(s)	75, 81
BmgT120I	GGNCC	3 cut(s)	75, 81, 589
BmiI	GGNNCC	5 cut(s)	77, 83, 303, 501, 591
BmrFI	CCNGG	4 cut(s)	47, 79, 103, 847
BmrI	ACTGGG	1 cut(s)	24
BmsI	GCATC	3 cut(s)	110, 344, 873
BmuI	ACTGGG	1 cut(s)	24
BpmI	CTGGAG	2 cut(s)	272, 829
Bpu1102I	GCTNAGC	1 cut(s)	693
BpuEI	CTTGAG	1 cut(s)	569
BpuMI	CCSGG	3 cut(s)	47, 79, 103
BsaJI	CCNNGG	2 cut(s)	147, 846
BsaXI	ACNNNNNCTCC	4 cut(s)	390, 420, 590, 620
Bsc4I	CCNNNNNNNGG	3 cut(s)	598, 728, 804
Bse1I	ACTGG	2 cut(s)	30, 255
Bse3DI	GCAATG	3 cut(s)	141, 215, 786
BseBI	CCWGG	1 cut(s)	847
BseDI	CCNNGG	2 cut(s)	147, 846
BseGI	GGATG	1 cut(s)	335
BseLI	CCNNNNNNNGG	3 cut(s)	598, 728, 804
BseMI	GCAATG	3 cut(s)	141, 215, 786
BseMII	CTCAG	3 cut(s)	195, 684, 802
BseNI	ACTGG	2 cut(s)	30, 255
BseRI	GAGGAG	1 cut(s)	269
BseXI	GCAGC	5 cut(s)	356, 722, 744, 772, 866
BsgI	GTGCAG	1 cut(s)	470
BshFI	GGCC	3 cut(s)	14, 140, 590
BsiHKAI	GWGCWC	1 cut(s)	162
BsiSI	CCGG	3 cut(s)	47, 79, 102
BslFI	GGGAC	1 cut(s)	21
BslI	CCNNNNNNNGG	3 cut(s)	598, 728, 804
BsmAI	GTCTC	2 cut(s)	412, 786
BsmFI	GGGAC	1 cut(s)	21
BsnI	GGCC	3 cut(s)	14, 140, 590
Bsp1286I	GDGCHC	1 cut(s)	162
Bsp1407I	TGTACA	1 cut(s)	487
Bsp143I	GATC	4 cut(s)	301, 457, 731, 784
Bsp1720I	GCTNAGC	1 cut(s)	693
BspACI	CCGC	3 cut(s)	61, 124, 164
BspANI	GGCC	3 cut(s)	14, 140, 590
BspCNI	CTCAG	3 cut(s)	196, 685, 801
BspLI	GGNNCC	5 cut(s)	77, 83, 303, 501, 591
BspMAI	CTGCAG	1 cut(s)	762
BspPI	GGATC	5 cut(s)	296, 309, 452, 739, 792
BsrBI	CCGCTC	1 cut(s)	166
BsrDI	GCAATG	3 cut(s)	141, 215, 786
BsrGI	TGTACA	1 cut(s)	487
BsrI	ACTGG	2 cut(s)	30, 255
BssECI	CCNNGG	2 cut(s)	147, 846
BssMI	GATC	4 cut(s)	301, 457, 731, 784
BssT1I	CCWWGG	1 cut(s)	147
Bst2UI	CCWGG	1 cut(s)	847
Bst4CI	ACNGT	2 cut(s)	509, 606
BstAPI	GCANNNNNTGC	1 cut(s)	341
BstAUI	TGTACA	1 cut(s)	487
BstC8I	GCNNGC	2 cut(s)	453, 864
BstDEI	CTNAG	3 cut(s)	204, 693, 788
BstENI	CCTNNNNNAGG	1 cut(s)	802
BstF5I	GGATG	1 cut(s)	335
BstKTI	GATC	4 cut(s)	304, 460, 734, 787
BstMAI	GTCTC	2 cut(s)	412, 786
BstMBI	GATC	4 cut(s)	301, 457, 731, 784
BstMWI	GCNNNNNNNGC	3 cut(s)	286, 341, 863
BstNI	CCWGG	1 cut(s)	847
BstSCI	CCNGG	4 cut(s)	45, 77, 101, 845
BstSFI	CTRYAG	1 cut(s)	758
BstV1I	GCAGC	5 cut(s)	356, 722, 744, 772, 866
BstX2I	RGATCY	3 cut(s)	301, 457, 784
BstXI	CCANNNNNNTGG	1 cut(s)	148
BstYI	RGATCY	3 cut(s)	301, 457, 784
BsuI	GTATCC	1 cut(s)	712
BsuRI	GGCC	3 cut(s)	14, 140, 590
BtsCI	GGATG	1 cut(s)	335
BtsIMutI	CAGTG	1 cut(s)	514
Cac8I	GCNNGC	2 cut(s)	453, 864
Cfr13I	GGNCC	3 cut(s)	75, 81, 589
Csp6I	GTAC	2 cut(s)	9, 488
CviAII	CATG	2 cut(s)	86, 127
CviQI	GTAC	2 cut(s)	9, 488
DdeI	CTNAG	3 cut(s)	204, 693, 788
DpnI	GATC	4 cut(s)	303, 459, 733, 786
DpnII	GATC	4 cut(s)	301, 457, 731, 784
DraI	TTTAAA	1 cut(s)	564
EaeI	YGGCCR	1 cut(s)	138
Ecl136II	GAGCTC	1 cut(s)	160
Eco130I	CCWWGG	1 cut(s)	147
Eco24I	GRGCYC	1 cut(s)	162
Eco32I	GATATC	1 cut(s)	726
Eco47I	GGWCC	2 cut(s)	75, 81
Eco53kI	GAGCTC	1 cut(s)	160
Eco57I	CTGAAG	1 cut(s)	160
EcoICRI	GAGCTC	1 cut(s)	160
EcoNI	CCTNNNNNAGG	1 cut(s)	802
EcoO109I	RGGNCCY	2 cut(s)	75, 589
EcoRI	GAATTC	1 cut(s)	55
EcoRII	CCWGG	1 cut(s)	845
EcoRV	GATATC	1 cut(s)	726
EcoT14I	CCWWGG	1 cut(s)	147
EcoT38I	GRGCYC	1 cut(s)	162
ErhI	CCWWGG	1 cut(s)	147
FaeI	CATG	2 cut(s)	89, 130
FalI	AAGNNNNNCTT	2 cut(s)	537, 569
FaqI	GGGAC	1 cut(s)	21
FatI	CATG	2 cut(s)	85, 126
FauI	CCCGC	2 cut(s)	68, 171
FblI	GTMKAC	1 cut(s)	247
Fnu4HI	GCNGC	6 cut(s)	124, 345, 711, 758, 761, 855
FokI	GGATG	1 cut(s)	322
FriOI	GRGCYC	1 cut(s)	162
Fsp4HI	GCNGC	6 cut(s)	124, 345, 711, 758, 761, 855
FspBI	CTAG	3 cut(s)	615, 809, 821
GluI	GCNGC	6 cut(s)	124, 345, 711, 758, 761, 855
GsuI	CTGGAG	2 cut(s)	272, 829
HaeIII	GGCC	3 cut(s)	14, 140, 590
HapII	CCGG	3 cut(s)	47, 79, 102
Hin1II	CATG	2 cut(s)	89, 130
HindIII	AAGCTT	2 cut(s)	278, 672
HinfI	GANTC	3 cut(s)	257, 740, 794
HpaII	CCGG	3 cut(s)	47, 79, 102
Hpy166II	GTNNAC	2 cut(s)	248, 639
Hpy188I	TCNGA	3 cut(s)	205, 745, 791
Hpy188III	TCNNGA	3 cut(s)	503, 729, 802
Hpy8I	GTNNAC	2 cut(s)	248, 639
HpyAV	CCTTC	6 cut(s)	25, 179, 184, 693, 715, 808
HpyCH4III	ACNGT	2 cut(s)	509, 606
HpyCH4IV	ACGT	1 cut(s)	378
HpyF10VI	GCNNNNNNNGC	3 cut(s)	286, 341, 863
HpyF3I	CTNAG	3 cut(s)	204, 693, 788
HpySE526I	ACGT	1 cut(s)	378
Hsp92II	CATG	2 cut(s)	89, 130
Kzo9I	GATC	4 cut(s)	301, 457, 731, 784
LmnI	GCTCC	4 cut(s)	157, 165, 171, 398
Lsp1109I	GCAGC	5 cut(s)	356, 722, 744, 772, 866
LweI	GCATC	3 cut(s)	110, 344, 873
MaeI	CTAG	3 cut(s)	615, 809, 821
MaeII	ACGT	1 cut(s)	378
MalI	GATC	4 cut(s)	303, 459, 733, 786
MbiI	CCGCTC	1 cut(s)	166
MboI	GATC	4 cut(s)	301, 457, 731, 784
MboII	GAAGA	3 cut(s)	64, 283, 341
MflI	RGATCY	3 cut(s)	301, 457, 784
MhlI	GDGCHC	1 cut(s)	162
MlsI	TGGCCA	1 cut(s)	140
MluNI	TGGCCA	1 cut(s)	140
MlyI	GAGTC	2 cut(s)	266, 788
MmeI	TCCRAC	3 cut(s)	135, 279, 376
MnlI	CCTC	9 cut(s)	154, 181, 211, 247, 261, 410, 541, 592, 798
Mox20I	TGGCCA	1 cut(s)	140
MscI	TGGCCA	1 cut(s)	140
MseI	TTAA	3 cut(s)	563, 773, 831
MslI	CAYNNNNRTG	2 cut(s)	225, 666
Msp20I	TGGCCA	1 cut(s)	140
MspI	CCGG	3 cut(s)	47, 79, 102
MspR9I	CCNGG	4 cut(s)	47, 79, 103, 847
MvaI	CCWGG	1 cut(s)	847
MwoI	GCNNNNNNNGC	3 cut(s)	286, 341, 863
NciI	CCSGG	3 cut(s)	47, 79, 103
NdeII	GATC	4 cut(s)	301, 457, 731, 784
NlaIII	CATG	2 cut(s)	89, 130
NlaIV	GGNNCC	5 cut(s)	77, 83, 303, 501, 591
PfeI	GAWTC	1 cut(s)	740
PflFI	GACNNNGTC	1 cut(s)	509
PfoI	TCCNGGA	1 cut(s)	45
PkrI	GCNGC	6 cut(s)	125, 346, 712, 759, 762, 856
PleI	GAGTC	2 cut(s)	265, 788
PpsI	GAGTC	2 cut(s)	265, 788
PpuMI	RGGWCCY	1 cut(s)	75
Psp124BI	GAGCTC	1 cut(s)	162
Psp1406I	AACGTT	1 cut(s)	378
Psp5II	RGGWCCY	1 cut(s)	75
Psp6I	CCWGG	1 cut(s)	845
PspGI	CCWGG	1 cut(s)	845
PspN4I	GGNNCC	5 cut(s)	77, 83, 303, 501, 591
PspPI	GGNCC	3 cut(s)	75, 81, 589
PspPPI	RGGWCCY	1 cut(s)	75
PsrI	GAACNNNNNNTAC	2 cut(s)	642, 674
PstI	CTGCAG	1 cut(s)	762
PsuI	RGATCY	3 cut(s)	301, 457, 784
PsyI	GACNNNGTC	1 cut(s)	509
RsaI	GTAC	2 cut(s)	10, 489
RsaNI	GTAC	2 cut(s)	9, 488
RseI	CAYNNNNRTG	2 cut(s)	225, 666
SacI	GAGCTC	1 cut(s)	162
SaqAI	TTAA	3 cut(s)	563, 773, 831
SatI	GCNGC	6 cut(s)	124, 345, 711, 758, 761, 855
Sau3AI	GATC	4 cut(s)	301, 457, 731, 784
Sau96I	GGNCC	3 cut(s)	75, 81, 589
SchI	GAGTC	2 cut(s)	266, 788
ScrFI	CCNGG	4 cut(s)	47, 79, 103, 847
SduI	GDGCHC	1 cut(s)	162
SfaNI	GCATC	3 cut(s)	110, 344, 873
SfcI	CTRYAG	1 cut(s)	758
SinI	GGWCC	2 cut(s)	75, 81
SmiMI	CAYNNNNRTG	2 cut(s)	225, 666
SmlI	CTYRAG	1 cut(s)	584
SmoI	CTYRAG	1 cut(s)	584
SsiI	CCGC	3 cut(s)	61, 124, 164
SspMI	CTAG	3 cut(s)	615, 809, 821
SstI	GAGCTC	1 cut(s)	162
StyD4I	CCNGG	4 cut(s)	45, 77, 101, 845
StyI	CCWWGG	1 cut(s)	147
TaaI	ACNGT	2 cut(s)	509, 606
TaiI	ACGT	1 cut(s)	381
TatI	WGTACW	1 cut(s)	487
TauI	GCSGC	1 cut(s)	126
TfiI	GAWTC	1 cut(s)	740
Tru1I	TTAA	3 cut(s)	563, 773, 831
Tru9I	TTAA	3 cut(s)	563, 773, 831
TscAI	CASTG	1 cut(s)	514
TseI	GCWGC	5 cut(s)	344, 710, 757, 760, 854
TspDTI	ATGAA	4 cut(s)	17, 243, 675, 684
TspRI	CASTG	1 cut(s)	514
Tth111I	GACNNNGTC	1 cut(s)	509
VpaK11BI	GGWCC	2 cut(s)	75, 81
XagI	CCTNNNNNAGG	1 cut(s)	802
XapI	RAATTY	4 cut(s)	55, 319, 443, 824
XmiI	GTMKAC	1 cut(s)	247
XspI	CTAG	3 cut(s)	615, 809, 821

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.