Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0003413

Physical Location & Seq

Genomic Coordinates Forward (+)

6927925 .. 6930602

Gene Structure 2678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1056900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGTTTAAATCAAGAAATGTGTCGTTGACAAGGAAGAAGCTTTTTGTGCATTTTGTGTTGGATCCTATCATCATTGACAATTCATCAGGAGAAGCATCCTTTGCAGCCAGAAATGGTTGCTTGGTTTTCATAGAAAATGCTGAGCGTTTAGAAGTTGGAGCACTAGTCTCTATTAGAGGAATTGGTCGTGTAAAAATTGTGAAATTTGTGCAGGCAGATCCTTACTTGAAAGGTGTTGTCATACCTGTGCACGAAAGGGTTCCTGAAAGCGGGAGCGGATTAGACCCAAAAGTAATGCAAGTAAAGGAAGCTCTTTATAGTTTAAATAGCTTGGAAATCAAGCTAAAGGCCCCCAAGGAGGCACCGTTGCAGACTCGAATTGCCAATTCTCTAATGTGGAGTGAAAAGGAACTAGTCTTAGATTGTGATGAAGCTTTCATTCCTTCCTTGCCTGAGCGTGTATCCTTTGCAGCACTTCAACCTGTATCAGGATCAGGTGAATCGGAACTTGCGAAACTACAGCAAGAGAAGTTAAGGGCAATGGAGCTCAAAGACACCTTCCAGAGGCTAGATAATTCCCTGGAATTTGTTAAAGATCGTATCTCCATGGTTGCAGCCAAGCTCGCTATACAATCAGTGGAGATGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LON_substr_bdg

Protein Analysis

217

Amino Acids

24.01

Weight (kDa)

8.47

Isoelectric Point (pI)

27.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35340 AT1G35340 AT1G35340 AT1G35340 AT1G35340 AT1G35340 AT1G35340
fragaria_vesca	FvH4_5g26640 FvH4_5g31600 FvH4_5g31600 FvH4_5g31600
malus_domestica	MD04G1056900.v1.1 MD14G1036300.v1.1 MD15G1405700.v1.1
prunus_persica	Prupe.1G555700_v2.0.a1 Prupe.1G555700_v2.0.a1 Prupe.1G555700_v2.0.a1 Prupe.1G555700_v2.0.a1 Prupe.1G555700_v2.0.a1 Prupe.1G555700_v2.0.a1 Prupe.1G555700_v2.0.a1 Prupe.1G555700_v2.0.a1 Prupe.1G555700_v2.0.a1
pyrus_communis	pycom04g05060 pycom15g36250
rosa_chinensis	RchiOBHm_Chr7g0227131
rosa_laevigata	RLG00000001666
rosa_multiflora	Rmu_sc0003153.1_g000021
rosa_roxburghii	Rroxscaffold_3G00232290
rosa_rugosa	Rorug07G0240900
rosa_samantha	Rh7AG390700 Rh7BG375700 Rh7CG409700 Rh7DG388000
rosa_wichuraiana	Rw0G014520 Rw7G032680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	361
AccBSI	CCGCTC	1 cut(s)	276
AciI	CCGC	2 cut(s)	270, 276
AclWI	GGATC	4 cut(s)	56, 69, 212, 499
AcsI	RAATTY	2 cut(s)	203, 584
AfiI	CCNNNNNNNGG	4 cut(s)	269, 358, 488, 564
AgsI	TTSAA	2 cut(s)	229, 479
AhlI	ACTAGT	2 cut(s)	163, 412
AjnI	CCWGG	1 cut(s)	579
AluBI	AGCT	7 cut(s)	40, 311, 330, 343, 434, 547, 622
AluI	AGCT	7 cut(s)	40, 311, 330, 343, 434, 547, 622
Alw21I	GWGCWC	3 cut(s)	163, 252, 549
Alw26I	GTCTC	1 cut(s)	172
Alw44I	GTGCAC	1 cut(s)	248
AlwI	GGATC	4 cut(s)	56, 69, 212, 499
AoxI	GGCC	1 cut(s)	348
ApaLI	GTGCAC	1 cut(s)	248
ApeKI	GCWGC	3 cut(s)	104, 470, 614
ApoI	RAATTY	2 cut(s)	203, 584
Asp700I	GAANNNNTTC	1 cut(s)	258
AspS9I	GGNCC	1 cut(s)	349
AsuHPI	GGTGA	1 cut(s)	509
BaeGI	GKGCMC	1 cut(s)	252
BamHI	GGATCC	1 cut(s)	61
BanI	GGYRCC	1 cut(s)	361
BanII	GRGCYC	1 cut(s)	549
Bbv12I	GWGCWC	3 cut(s)	163, 252, 549
BbvI	GCAGC	3 cut(s)	116, 482, 626
BciT130I	CCWGG	1 cut(s)	581
BciVI	GTATCC	1 cut(s)	472
BcoDI	GTCTC	1 cut(s)	172
BcuI	ACTAGT	2 cut(s)	163, 412
BfaI	CTAG	3 cut(s)	164, 413, 569
BfmI	CTRYAG	1 cut(s)	518
BfuI	GTATCC	1 cut(s)	472
BisI	GCNGC	3 cut(s)	105, 471, 615
BlpI	GCTNAGC	1 cut(s)	141
BlsI	GCNGC	3 cut(s)	106, 472, 616
Bme1390I	CCNGG	1 cut(s)	581
BmgT120I	GGNCC	1 cut(s)	349
BmiI	GGNNCC	4 cut(s)	63, 261, 351, 363
BmrFI	CCNGG	1 cut(s)	581
BmsI	GCATC	1 cut(s)	104
Bpu10I	CCTNAGC	1 cut(s)	453
Bpu1102I	GCTNAGC	1 cut(s)	141
BsaJI	CCNNGG	3 cut(s)	354, 579, 606
BsaXI	ACNNNNNCTCC	5 cut(s)	150, 180, 350, 380, 632
Bsc4I	CCNNNNNNNGG	4 cut(s)	269, 358, 488, 564
Bse3DI	GCAATG	1 cut(s)	546
BseBI	CCWGG	1 cut(s)	581
BseDI	CCNNGG	3 cut(s)	354, 579, 606
BseGI	GGATG	1 cut(s)	95
BseLI	CCNNNNNNNGG	4 cut(s)	269, 358, 488, 564
BseMI	GCAATG	1 cut(s)	546
BseMII	CTCAG	2 cut(s)	132, 444
BseSI	GKGCMC	1 cut(s)	252
BseXI	GCAGC	3 cut(s)	116, 482, 626
BsgI	GTGCAG	1 cut(s)	230
BshFI	GGCC	1 cut(s)	350
BshNI	GGYRCC	1 cut(s)	361
BsiHKAI	GWGCWC	3 cut(s)	163, 252, 549
BslI	CCNNNNNNNGG	4 cut(s)	269, 358, 488, 564
BsmAI	GTCTC	1 cut(s)	172
BsnI	GGCC	1 cut(s)	350
Bsp1286I	GDGCHC	3 cut(s)	163, 252, 549
Bsp143I	GATC	4 cut(s)	61, 217, 491, 595
Bsp1720I	GCTNAGC	1 cut(s)	141
Bsp19I	CCATGG	1 cut(s)	606
BspACI	CCGC	2 cut(s)	270, 276
BspANI	GGCC	1 cut(s)	350
BspCNI	CTCAG	2 cut(s)	133, 445
BspLI	GGNNCC	4 cut(s)	63, 261, 351, 363
BspPI	GGATC	4 cut(s)	56, 69, 212, 499
BspT107I	GGYRCC	1 cut(s)	361
BsrBI	CCGCTC	1 cut(s)	276
BsrDI	GCAATG	1 cut(s)	546
BssECI	CCNNGG	3 cut(s)	354, 579, 606
BssMI	GATC	4 cut(s)	61, 217, 491, 595
BssT1I	CCWWGG	2 cut(s)	354, 606
Bst2UI	CCWGG	1 cut(s)	581
Bst4CI	ACNGT	1 cut(s)	366
BstAPI	GCANNNNNTGC	1 cut(s)	101
BstC8I	GCNNGC	2 cut(s)	213, 624
BstDEI	CTNAG	3 cut(s)	141, 418, 453
BstDSI	CCRYGG	1 cut(s)	606
BstENI	CCTNNNNNAGG	2 cut(s)	486, 562
BstF5I	GGATG	1 cut(s)	95
BstKTI	GATC	4 cut(s)	64, 220, 494, 598
BstMAI	GTCTC	1 cut(s)	172
BstMBI	GATC	4 cut(s)	61, 217, 491, 595
BstMWI	GCNNNNNNNGC	3 cut(s)	46, 101, 623
BstNI	CCWGG	1 cut(s)	581
BstSCI	CCNGG	1 cut(s)	579
BstSFI	CTRYAG	1 cut(s)	518
BstSLI	GKGCMC	1 cut(s)	252
BstV1I	GCAGC	3 cut(s)	116, 482, 626
BstX2I	RGATCY	2 cut(s)	61, 217
BstYI	RGATCY	2 cut(s)	61, 217
BsuI	GTATCC	1 cut(s)	472
BsuRI	GGCC	1 cut(s)	350
BtgI	CCRYGG	1 cut(s)	606
BtsCI	GGATG	1 cut(s)	95
BtsIMutI	CAGTG	1 cut(s)	642
Cac8I	GCNNGC	2 cut(s)	213, 624
Cfr13I	GGNCC	1 cut(s)	349
CviAII	CATG	1 cut(s)	607
DdeI	CTNAG	3 cut(s)	141, 418, 453
DpnI	GATC	4 cut(s)	63, 219, 493, 597
DpnII	GATC	4 cut(s)	61, 217, 491, 595
DraI	TTTAAA	2 cut(s)	7, 324
Ecl136II	GAGCTC	1 cut(s)	547
Eco130I	CCWWGG	2 cut(s)	354, 606
Eco24I	GRGCYC	1 cut(s)	549
Eco53kI	GAGCTC	1 cut(s)	547
EcoICRI	GAGCTC	1 cut(s)	547
EcoNI	CCTNNNNNAGG	2 cut(s)	486, 562
EcoO109I	RGGNCCY	1 cut(s)	349
EcoRII	CCWGG	1 cut(s)	579
EcoT14I	CCWWGG	2 cut(s)	354, 606
EcoT38I	GRGCYC	1 cut(s)	549
ErhI	CCWWGG	2 cut(s)	354, 606
FaeI	CATG	1 cut(s)	610
FaiI	YATR	5 cut(s)	131, 242, 318, 608, 629
FatI	CATG	1 cut(s)	606
FauI	CCCGC	1 cut(s)	263
Fnu4HI	GCNGC	3 cut(s)	105, 471, 615
FokI	GGATG	1 cut(s)	82
FriOI	GRGCYC	1 cut(s)	549
Fsp4HI	GCNGC	3 cut(s)	105, 471, 615
FspBI	CTAG	3 cut(s)	164, 413, 569
GluI	GCNGC	3 cut(s)	105, 471, 615
HaeIII	GGCC	1 cut(s)	350
Hin1II	CATG	1 cut(s)	610
HincII	GTYRAC	1 cut(s)	27
HindII	GTYRAC	1 cut(s)	27
HindIII	AAGCTT	2 cut(s)	38, 432
HinfI	GANTC	2 cut(s)	373, 500
HphI	GGTGA	1 cut(s)	509
Hpy166II	GTNNAC	2 cut(s)	27, 250
Hpy188I	TCNGA	1 cut(s)	505
Hpy188III	TCNNGA	5 cut(s)	12, 87, 263, 489, 562
Hpy8I	GTNNAC	2 cut(s)	27, 250
HpyAV	CCTTC	2 cut(s)	453, 568
HpyCH4III	ACNGT	1 cut(s)	366
HpyCH4V	TGCA	8 cut(s)	49, 104, 211, 250, 298, 370, 470, 614
HpyF10VI	GCNNNNNNNGC	3 cut(s)	46, 101, 623
HpyF3I	CTNAG	3 cut(s)	141, 418, 453
Hsp92II	CATG	1 cut(s)	610
Kzo9I	GATC	4 cut(s)	61, 217, 491, 595
LmnI	GCTCC	3 cut(s)	158, 273, 544
Lsp1109I	GCAGC	3 cut(s)	116, 482, 626
LweI	GCATC	1 cut(s)	104
MaeI	CTAG	3 cut(s)	164, 413, 569
MalI	GATC	4 cut(s)	63, 219, 493, 597
MbiI	CCGCTC	1 cut(s)	276
MboI	GATC	4 cut(s)	61, 217, 491, 595
MboII	GAAGA	1 cut(s)	46
MflI	RGATCY	2 cut(s)	61, 217
MhlI	GDGCHC	3 cut(s)	163, 252, 549
MluCI	AATT	8 cut(s)	79, 180, 195, 203, 378, 385, 574, 584
MlyI	GAGTC	1 cut(s)	367
MmeI	TCCRAC	2 cut(s)	39, 136
MnlI	CCTC	3 cut(s)	170, 352, 558
MroXI	GAANNNNTTC	1 cut(s)	258
MseI	TTAA	4 cut(s)	6, 323, 533, 591
MslI	CAYNNNNRTG	1 cut(s)	245
MspR9I	CCNGG	1 cut(s)	581
MvaI	CCWGG	1 cut(s)	581
MwoI	GCNNNNNNNGC	3 cut(s)	46, 101, 623
NcoI	CCATGG	1 cut(s)	606
NdeII	GATC	4 cut(s)	61, 217, 491, 595
NlaIII	CATG	1 cut(s)	610
NlaIV	GGNNCC	4 cut(s)	63, 261, 351, 363
PcsI	WCGNNNNNNNCGW	1 cut(s)	509
PdmI	GAANNNNTTC	1 cut(s)	258
PfeI	GAWTC	1 cut(s)	500
PkrI	GCNGC	3 cut(s)	106, 472, 616
PleI	GAGTC	1 cut(s)	367
PpsI	GAGTC	1 cut(s)	367
Psp124BI	GAGCTC	1 cut(s)	549
Psp6I	CCWGG	1 cut(s)	579
PspGI	CCWGG	1 cut(s)	579
PspN4I	GGNNCC	4 cut(s)	63, 261, 351, 363
PspPI	GGNCC	1 cut(s)	349
PsuI	RGATCY	2 cut(s)	61, 217
RseI	CAYNNNNRTG	1 cut(s)	245
SacI	GAGCTC	1 cut(s)	549
SaqAI	TTAA	4 cut(s)	6, 323, 533, 591
SatI	GCNGC	3 cut(s)	105, 471, 615
Sau3AI	GATC	4 cut(s)	61, 217, 491, 595
Sau96I	GGNCC	1 cut(s)	349
SchI	GAGTC	1 cut(s)	367
ScrFI	CCNGG	1 cut(s)	581
SduI	GDGCHC	3 cut(s)	163, 252, 549
SfaNI	GCATC	1 cut(s)	104
SfcI	CTRYAG	1 cut(s)	518
SmiMI	CAYNNNNRTG	1 cut(s)	245
SpeI	ACTAGT	2 cut(s)	163, 412
Sse9I	AATT	8 cut(s)	79, 180, 195, 203, 378, 385, 574, 584
SsiI	CCGC	2 cut(s)	270, 276
SspMI	CTAG	3 cut(s)	164, 413, 569
SstI	GAGCTC	1 cut(s)	549
StyD4I	CCNGG	1 cut(s)	579
StyI	CCWWGG	2 cut(s)	354, 606
TaaI	ACNGT	1 cut(s)	366
TaqI	TCGA	1 cut(s)	376
TasI	AATT	8 cut(s)	79, 180, 195, 203, 378, 385, 574, 584
TfiI	GAWTC	1 cut(s)	500
Tru1I	TTAA	4 cut(s)	6, 323, 533, 591
Tru9I	TTAA	4 cut(s)	6, 323, 533, 591
TscAI	CASTG	1 cut(s)	642
TseI	GCWGC	3 cut(s)	104, 470, 614
TspDTI	ATGAA	4 cut(s)	72, 118, 427, 444
TspRI	CASTG	1 cut(s)	642
VneI	GTGCAC	1 cut(s)	248
XagI	CCTNNNNNAGG	2 cut(s)	486, 562
XapI	RAATTY	2 cut(s)	203, 584
XmnI	GAANNNNTTC	1 cut(s)	258
XspI	CTAG	3 cut(s)	164, 413, 569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.