Rw0G014520

ATP-dependent protease La (LON) substrate-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00650
OG0003413
Physical Location & Seq
Reverse (-)
117891 .. 122205
4315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G014520.1

Sequence Viewer

Length: 876 bp
ATGACTTGTACGGCCTTCAATCTCACTACTACCACCAGCCCCTTTCCCGCAAGGACGACCCGAATCCGAAACCCGCACCCGACCCTCCACCGTTTCCTCCATTTCGGATTCACCCGCCCGAAGCAGAAACGATGCCGTTTCTCGCCGCCAAACGCCACCTCCTTGGAGCTCCCGCTGCTCCCCTTCACCTTGACCGAGGTTCTGGTTCCAACTGAGAGTAAAACACTGCATTTATATGAAGCCAGATATCTTGCTCTTCTCGAGGAGTCATTGTTGAGGAACAAGAAGTTCTTTGTGCATTTTGTGCTGGATCCTATCATTATTGATGATTCATTGGAAGAAGCATCTTTTGCAGCTAGAAATGGTTGTTTGGTATTTATAGAAAATGTTGAGAGATTAGAAGTTGGAGCATTAGTCTCTATAAGAGGAATTGGTCGTGTAAAGATTATCAAATTTCTGCAGGCAGATCCTTACTTGAAAGGTGTTGTCATACCCGTGCAGGACAGGGTACCAGATAGTGTAAGCAGATTAAGCCCCAAAGTTTTTCAAGTAAAAGAGGCTCTGTGTAGTTTAAATAGTTTGGAAATCAAACTAAAGACTCAAATTGCCAACTCTCTGATGTGGACGGAAAAGGAACTACAAGTGGACTGTGATGAAGCTTTCTTTCCTTCCTTGGCTGAGCGTGTATCCTTTGCGGCACTTCAACCTGTATCAGGATCAAGTCAATCGGAACTTCTGAAGCTGCAGCAAGAGAAATTAAAGGCAATGGAGCTGAAAGACACAATGCATAGGCTAGATAATTCATTACAGTTTGTCAAAGATAATATCTCCATGGTTGCAGCCAAGCTTGCAATACAATCAGTAGAGATGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LON_substr_bdg

Protein Analysis

291

Amino Acids

32.93

Weight (kDa)

8.92

Isoelectric Point (pI)

46.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LON_substr_bdg PF02190 57 - 209 2e-10 ATP-dependent protease La (LON) substrate-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 508
AccB1I GGYRCC 1 cut(s) 508
AciI CCGC 6 cut(s) 48, 74, 115, 146, 173, 695
AclWI GGATC 4 cut(s) 305, 318, 461, 724
AcsI RAATTY 1 cut(s) 452
AcuI CTGAAG 1 cut(s) 758
AfaI GTAC 2 cut(s) 10, 510
AfiI CCNNNNNNNGG 1 cut(s) 713
AgsI TTSAA 4 cut(s) 19, 478, 548, 704
AluBI AGCT 6 cut(s) 169, 356, 659, 742, 772, 847
AluI AGCT 6 cut(s) 169, 356, 659, 742, 772, 847
Alw21I GWGCWC 1 cut(s) 171
Alw26I GTCTC 1 cut(s) 421
AlwI GGATC 4 cut(s) 305, 318, 461, 724
Ama87I CYCGRG 1 cut(s) 260
AoxI GGCC 1 cut(s) 12
ApeKI GCWGC 5 cut(s) 175, 353, 742, 745, 839
ApoI RAATTY 1 cut(s) 452
Asp718I GGTACC 1 cut(s) 508
AsuHPI GGTGA 2 cut(s) 103, 178
AvaI CYCGRG 1 cut(s) 260
BamHI GGATCC 1 cut(s) 310
BanI GGYRCC 1 cut(s) 508
BanII GRGCYC 1 cut(s) 171
Bbv12I GWGCWC 1 cut(s) 171
BbvI GCAGC 5 cut(s) 162, 365, 729, 757, 851
BceAI ACGGC 2 cut(s) 27, 120
BciVI GTATCC 1 cut(s) 697
BcoDI GTCTC 1 cut(s) 421
BfaI CTAG 2 cut(s) 357, 794
BfmI CTRYAG 2 cut(s) 458, 743
BfuI GTATCC 1 cut(s) 697
BisI GCNGC 7 cut(s) 146, 176, 354, 696, 743, 746, 840
BlpI GCTNAGC 1 cut(s) 678
BlsI GCNGC 7 cut(s) 147, 177, 355, 697, 744, 747, 841
BmeT110I CYCGRG 1 cut(s) 260
BmiI GGNNCC 3 cut(s) 207, 312, 510
BmsI GCATC 2 cut(s) 122, 353
Bpu1102I GCTNAGC 1 cut(s) 678
BsaJI CCNNGG 4 cut(s) 162, 195, 672, 831
BsaXI ACNNNNNCTCC 6 cut(s) 143, 173, 257, 287, 399, 429
Bsc4I CCNNNNNNNGG 1 cut(s) 713
Bse3DI GCAATG 1 cut(s) 771
BseDI CCNNGG 4 cut(s) 162, 195, 672, 831
BseLI CCNNNNNNNGG 1 cut(s) 713
BseMI GCAATG 1 cut(s) 771
BseMII CTCAG 2 cut(s) 204, 669
BseRI GAGGAG 1 cut(s) 278
BseXI GCAGC 5 cut(s) 162, 365, 729, 757, 851
BsgI GTGCAG 1 cut(s) 518
BshFI GGCC 1 cut(s) 14
BshNI GGYRCC 1 cut(s) 508
BsiHKAI GWGCWC 1 cut(s) 171
BsiHKCI CYCGRG 1 cut(s) 260
BslI CCNNNNNNNGG 1 cut(s) 713
BsmAI GTCTC 1 cut(s) 421
BsnI GGCC 1 cut(s) 14
BsoBI CYCGRG 1 cut(s) 260
Bsp1286I GDGCHC 1 cut(s) 171
Bsp143I GATC 3 cut(s) 310, 466, 716
Bsp1720I GCTNAGC 1 cut(s) 678
Bsp19I CCATGG 1 cut(s) 831
BspACI CCGC 6 cut(s) 48, 74, 115, 146, 173, 695
BspANI GGCC 1 cut(s) 14
BspCNI CTCAG 2 cut(s) 205, 670
BspLI GGNNCC 3 cut(s) 207, 312, 510
BspMAI CTGCAG 2 cut(s) 462, 747
BspPI GGATC 4 cut(s) 305, 318, 461, 724
BspQI GCTCTTC 1 cut(s) 261
BspT107I GGYRCC 1 cut(s) 508
BsrDI GCAATG 1 cut(s) 771
BssECI CCNNGG 4 cut(s) 162, 195, 672, 831
BssMI GATC 3 cut(s) 310, 466, 716
BssT1I CCWWGG 3 cut(s) 162, 672, 831
Bst4CI ACNGT 3 cut(s) 92, 650, 810
Bst6I CTCTTC 1 cut(s) 261
BstAPI GCANNNNNTGC 2 cut(s) 304, 350
BstC8I GCNNGC 2 cut(s) 462, 849
BstDEI CTNAG 2 cut(s) 213, 678
BstDSI CCRYGG 1 cut(s) 831
BstENI CCTNNNNNAGG 1 cut(s) 711
BstKTI GATC 3 cut(s) 313, 469, 719
BstMAI GTCTC 1 cut(s) 421
BstMBI GATC 3 cut(s) 310, 466, 716
BstMWI GCNNNNNNNGC 5 cut(s) 175, 304, 350, 531, 848
BstSFI CTRYAG 2 cut(s) 458, 743
BstV1I GCAGC 5 cut(s) 162, 365, 729, 757, 851
BstX2I RGATCY 2 cut(s) 310, 466
BstXI CCANNNNNNTGG 1 cut(s) 163
BstYI RGATCY 2 cut(s) 310, 466
BsuI GTATCC 1 cut(s) 697
BsuRI GGCC 1 cut(s) 14
BtgI CCRYGG 1 cut(s) 831
BtsI GCAGTG 1 cut(s) 224
BtsIMutI CAGTG 1 cut(s) 224
Cac8I GCNNGC 2 cut(s) 462, 849
Csp6I GTAC 2 cut(s) 9, 509
CviAII CATG 1 cut(s) 832
CviQI GTAC 2 cut(s) 9, 509
DdeI CTNAG 2 cut(s) 213, 678
DpnI GATC 3 cut(s) 312, 468, 718
DpnII GATC 3 cut(s) 310, 466, 716
DraI TTTAAA 1 cut(s) 573
Eam1104I CTCTTC 1 cut(s) 261
EarI CTCTTC 1 cut(s) 261
Ecl136II GAGCTC 1 cut(s) 169
Eco130I CCWWGG 3 cut(s) 162, 672, 831
Eco24I GRGCYC 1 cut(s) 171
Eco32I GATATC 1 cut(s) 248
Eco53kI GAGCTC 1 cut(s) 169
Eco57I CTGAAG 1 cut(s) 758
Eco88I CYCGRG 1 cut(s) 260
EcoICRI GAGCTC 1 cut(s) 169
EcoNI CCTNNNNNAGG 1 cut(s) 711
EcoRV GATATC 1 cut(s) 248
EcoT14I CCWWGG 3 cut(s) 162, 672, 831
EcoT22I ATGCAT 1 cut(s) 789
EcoT38I GRGCYC 1 cut(s) 171
ErhI CCWWGG 3 cut(s) 162, 672, 831
FaeI CATG 1 cut(s) 835
FaiI YATR 7 cut(s) 235, 237, 380, 422, 491, 789, 833
FalI AAGNNNNNCTT 2 cut(s) 275, 307
FatI CATG 1 cut(s) 831
FauI CCCGC 4 cut(s) 55, 81, 122, 180
Fnu4HI GCNGC 7 cut(s) 146, 176, 354, 696, 743, 746, 840
FriOI GRGCYC 1 cut(s) 171
Fsp4HI GCNGC 7 cut(s) 146, 176, 354, 696, 743, 746, 840
FspBI CTAG 2 cut(s) 357, 794
GluI GCNGC 7 cut(s) 146, 176, 354, 696, 743, 746, 840
HaeIII GGCC 1 cut(s) 14
Hin1II CATG 1 cut(s) 835
HindIII AAGCTT 2 cut(s) 657, 845
HinfI GANTC 5 cut(s) 63, 108, 266, 329, 598
HphI GGTGA 2 cut(s) 103, 178
Hpy166II GTNNAC 2 cut(s) 624, 646
Hpy188I TCNGA 5 cut(s) 68, 107, 618, 730, 738
Hpy188III TCNNGA 2 cut(s) 260, 714
Hpy8I GTNNAC 2 cut(s) 624, 646
HpyAV CCTTC 3 cut(s) 25, 193, 678
HpyCH4III ACNGT 3 cut(s) 92, 650, 810
HpyCH4V TGCA 9 cut(s) 229, 298, 353, 460, 499, 745, 787, 839, 851
HpyF10VI GCNNNNNNNGC 5 cut(s) 175, 304, 350, 531, 848
HpyF3I CTNAG 2 cut(s) 213, 678
Hsp92II CATG 1 cut(s) 835
KpnI GGTACC 1 cut(s) 512
Kzo9I GATC 3 cut(s) 310, 466, 716
LguI GCTCTTC 1 cut(s) 261
LmnI GCTCC 5 cut(s) 166, 174, 183, 407, 769
Lsp1109I GCAGC 5 cut(s) 162, 365, 729, 757, 851
LweI GCATC 2 cut(s) 122, 353
MaeI CTAG 2 cut(s) 357, 794
MalI GATC 3 cut(s) 312, 468, 718
MboI GATC 3 cut(s) 310, 466, 716
MboII GAAGA 2 cut(s) 248, 350
MflI RGATCY 2 cut(s) 310, 466
MhlI GDGCHC 1 cut(s) 171
MluCI AATT 5 cut(s) 429, 452, 603, 755, 799
MlyI GAGTC 2 cut(s) 275, 592
MmeI TCCRAC 2 cut(s) 233, 385
MnlI CCTC 8 cut(s) 95, 107, 169, 190, 256, 270, 419, 550
Mph1103I ATGCAT 1 cut(s) 789
MseI TTAA 3 cut(s) 530, 572, 758
MslI CAYNNNNRTG 2 cut(s) 234, 494
MspA1I CMGCKG 1 cut(s) 175
MwoI GCNNNNNNNGC 5 cut(s) 175, 304, 350, 531, 848
NcoI CCATGG 1 cut(s) 831
NdeII GATC 3 cut(s) 310, 466, 716
NlaIII CATG 1 cut(s) 835
NlaIV GGNNCC 3 cut(s) 207, 312, 510
NsiI ATGCAT 1 cut(s) 789
PaeR7I CTCGAG 1 cut(s) 260
PciSI GCTCTTC 1 cut(s) 261
PfeI GAWTC 3 cut(s) 63, 108, 329
PkrI GCNGC 7 cut(s) 147, 177, 355, 697, 744, 747, 841
PleI GAGTC 2 cut(s) 274, 592
PpsI GAGTC 2 cut(s) 274, 592
Psp124BI GAGCTC 1 cut(s) 171
PspN4I GGNNCC 3 cut(s) 207, 312, 510
PstI CTGCAG 2 cut(s) 462, 747
PsuI RGATCY 2 cut(s) 310, 466
RsaI GTAC 2 cut(s) 10, 510
RsaNI GTAC 2 cut(s) 9, 509
RseI CAYNNNNRTG 2 cut(s) 234, 494
SacI GAGCTC 1 cut(s) 171
SapI GCTCTTC 1 cut(s) 261
SaqAI TTAA 3 cut(s) 530, 572, 758
SatI GCNGC 7 cut(s) 146, 176, 354, 696, 743, 746, 840
Sau3AI GATC 3 cut(s) 310, 466, 716
SchI GAGTC 2 cut(s) 275, 592
SduI GDGCHC 1 cut(s) 171
SfaNI GCATC 2 cut(s) 122, 353
SfcI CTRYAG 2 cut(s) 458, 743
Sfr274I CTCGAG 1 cut(s) 260
SlaI CTCGAG 1 cut(s) 260
SmiMI CAYNNNNRTG 2 cut(s) 234, 494
SmlI CTYRAG 1 cut(s) 260
SmoI CTYRAG 1 cut(s) 260
Sse9I AATT 5 cut(s) 429, 452, 603, 755, 799
SsiI CCGC 6 cut(s) 48, 74, 115, 146, 173, 695
SspMI CTAG 2 cut(s) 357, 794
SstI GAGCTC 1 cut(s) 171
StyI CCWWGG 3 cut(s) 162, 672, 831
TaaI ACNGT 3 cut(s) 92, 650, 810
TaqI TCGA 1 cut(s) 261
TaqII GACCGA 1 cut(s) 209
TasI AATT 5 cut(s) 429, 452, 603, 755, 799
TauI GCSGC 2 cut(s) 148, 698
TfiI GAWTC 3 cut(s) 63, 108, 329
Tru1I TTAA 3 cut(s) 530, 572, 758
Tru9I TTAA 3 cut(s) 530, 572, 758
TscAI CASTG 1 cut(s) 231
TseI GCWGC 5 cut(s) 175, 353, 742, 745, 839
TspDTI ATGAA 4 cut(s) 252, 321, 669, 792
TspGWI ACGGA 1 cut(s) 641
TspRI CASTG 1 cut(s) 231
XagI CCTNNNNNAGG 1 cut(s) 711
XapI RAATTY 1 cut(s) 452
XhoI CTCGAG 1 cut(s) 260
XspI CTAG 2 cut(s) 357, 794
Zsp2I ATGCAT 1 cut(s) 789
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.