RLG00000001666

ATP-dependent protease La (LON) substrate-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0003413
Physical Location & Seq
Reverse (-)
18940956 .. 18944919
3964 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001666

Sequence Viewer

Length: 903 bp
ATGACTTGTACGGCCTTCAATCTCACTACCACCAGCCCCCTTCTCCCTGCAACGACGACCCGAATCCGAAACCCGCACCCGACCCTCCAGCACCGTTTCCTCCATTTCGGTTTCACCCGCCCGAAGCAGAAACGATGCCGTTTCTCGCCGCCAAACGCCACCTCCCTGGAGCTCCCGCTGCTCCCCTTCACCTTGACCGAGGTTCTGGTTCCAACTGAGAGTAAAACACTGCATTTATATGAAGCCAGATATCTTGCTCTACTCGAAGAGTCATTGTTGAGGAACAAGAAGTTCTTCGTGCATTTTGTGCTGGATCCTATCATTATTGATGATTCATTGGAAGAAGCATCTTTTGCAGCTAGAAATGGTTGTTTGGTATTTATAGAAAATGTTGAGAGATTAGAAGTTGGAGCATTAGTCTCTATAAGAGGAATTGGTCGTGTAAAGATTATCAAATTTCTGCAGGCAGATCCTTACTTGAAAGGTGTTGTCATACCCGTGCAGGACAGGGTACCTGATAGTGTAAGCAGATTAAGCCCCAAAGTTATTCAAGTAAAAGAGGCTCTGTGTAGTTTAAATAGTTTGGAAATCAAACTAAAGGCTCCAAAGGAGGCACCTTTGCAGACTCAAATTGCCAACTCTCTGATGTGGACGGAAAAGGAACTACAAGTGGACTGTAATGAAGCTTTCTTTCCTTCCTTGGCTGAGCGTGTATCCTTTGCGGCACTTCAACCTGTATCAGGATCAAGTCAATCGGAACTTCTGAAGCTGCAGCAAGAGAAATTAAAGGCAATGGAGTTGAAAGACACAATGCATAGGTTAGATAATTCATTACAGTTTGTCAAAGATAATATCTCCATGGTTGCAGCCAAGCTTGCAATACAATCAGTAGAGATGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LON_substr_bdg

Protein Analysis

301

Amino Acids

33.78

Weight (kDa)

8.9

Isoelectric Point (pI)

47.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LON_substr_bdg PF02190 58 - 275 1.3e-10 ATP-dependent protease La (LON) substrate-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 511
AccB1I GGYRCC 2 cut(s) 511, 613
AciI CCGC 5 cut(s) 74, 118, 149, 176, 722
AclWI GGATC 4 cut(s) 308, 321, 464, 751
AcsI RAATTY 1 cut(s) 455
AcuI CTGAAG 1 cut(s) 785
AfaI GTAC 2 cut(s) 10, 513
AfiI CCNNNNNNNGG 1 cut(s) 740
AgsI TTSAA 5 cut(s) 19, 481, 551, 731, 802
AjnI CCWGG 1 cut(s) 165
AluBI AGCT 5 cut(s) 172, 359, 686, 769, 874
AluI AGCT 5 cut(s) 172, 359, 686, 769, 874
Alw21I GWGCWC 1 cut(s) 174
Alw26I GTCTC 1 cut(s) 424
AlwI GGATC 4 cut(s) 308, 321, 464, 751
AoxI GGCC 1 cut(s) 12
ApeKI GCWGC 5 cut(s) 178, 356, 769, 772, 866
ApoI RAATTY 1 cut(s) 455
Asp700I GAANNNNTTC 1 cut(s) 293
Asp718I GGTACC 1 cut(s) 511
AsuHPI GGTGA 2 cut(s) 106, 181
BamHI GGATCC 1 cut(s) 313
BanI GGYRCC 2 cut(s) 511, 613
BanII GRGCYC 1 cut(s) 174
Bbv12I GWGCWC 1 cut(s) 174
BbvI GCAGC 5 cut(s) 165, 368, 756, 784, 878
BceAI ACGGC 2 cut(s) 27, 123
BciT130I CCWGG 1 cut(s) 167
BciVI GTATCC 1 cut(s) 724
BcoDI GTCTC 1 cut(s) 424
BfaI CTAG 1 cut(s) 360
BfmI CTRYAG 2 cut(s) 461, 770
BfuI GTATCC 1 cut(s) 724
BisI GCNGC 7 cut(s) 149, 179, 357, 723, 770, 773, 867
BlpI GCTNAGC 1 cut(s) 705
BlsI GCNGC 7 cut(s) 150, 180, 358, 724, 771, 774, 868
Bme1390I CCNGG 1 cut(s) 167
BmiI GGNNCC 5 cut(s) 210, 315, 513, 603, 615
BmrFI CCNGG 1 cut(s) 167
BmsI GCATC 2 cut(s) 125, 356
BpmI CTGGAG 2 cut(s) 71, 188
Bpu1102I GCTNAGC 1 cut(s) 705
BsaJI CCNNGG 4 cut(s) 165, 198, 699, 858
BsaXI ACNNNNNCTCC 4 cut(s) 146, 176, 402, 432
Bsc4I CCNNNNNNNGG 1 cut(s) 740
Bse3DI GCAATG 1 cut(s) 798
BseBI CCWGG 1 cut(s) 167
BseDI CCNNGG 4 cut(s) 165, 198, 699, 858
BseLI CCNNNNNNNGG 1 cut(s) 740
BseMI GCAATG 1 cut(s) 798
BseMII CTCAG 2 cut(s) 207, 696
BseXI GCAGC 5 cut(s) 165, 368, 756, 784, 878
BsgI GTGCAG 1 cut(s) 521
BshFI GGCC 1 cut(s) 14
BshNI GGYRCC 2 cut(s) 511, 613
BsiHKAI GWGCWC 1 cut(s) 174
BslI CCNNNNNNNGG 1 cut(s) 740
BsmAI GTCTC 1 cut(s) 424
BsnI GGCC 1 cut(s) 14
Bsp1286I GDGCHC 1 cut(s) 174
Bsp143I GATC 3 cut(s) 313, 469, 743
Bsp1720I GCTNAGC 1 cut(s) 705
Bsp19I CCATGG 1 cut(s) 858
BspACI CCGC 5 cut(s) 74, 118, 149, 176, 722
BspANI GGCC 1 cut(s) 14
BspCNI CTCAG 2 cut(s) 208, 697
BspLI GGNNCC 5 cut(s) 210, 315, 513, 603, 615
BspMAI CTGCAG 2 cut(s) 465, 774
BspPI GGATC 4 cut(s) 308, 321, 464, 751
BspT107I GGYRCC 2 cut(s) 511, 613
BsrDI GCAATG 1 cut(s) 798
BssECI CCNNGG 4 cut(s) 165, 198, 699, 858
BssMI GATC 3 cut(s) 313, 469, 743
BssT1I CCWWGG 2 cut(s) 699, 858
Bst2UI CCWGG 1 cut(s) 167
Bst4CI ACNGT 3 cut(s) 95, 677, 837
Bst6I CTCTTC 1 cut(s) 261
BstAPI GCANNNNNTGC 2 cut(s) 307, 353
BstC8I GCNNGC 2 cut(s) 465, 876
BstDEI CTNAG 2 cut(s) 216, 705
BstDSI CCRYGG 1 cut(s) 858
BstENI CCTNNNNNAGG 1 cut(s) 738
BstKTI GATC 3 cut(s) 316, 472, 746
BstMAI GTCTC 1 cut(s) 424
BstMBI GATC 3 cut(s) 313, 469, 743
BstMWI GCNNNNNNNGC 5 cut(s) 178, 307, 353, 534, 875
BstNI CCWGG 1 cut(s) 167
BstSCI CCNGG 1 cut(s) 165
BstSFI CTRYAG 2 cut(s) 461, 770
BstV1I GCAGC 5 cut(s) 165, 368, 756, 784, 878
BstX2I RGATCY 2 cut(s) 313, 469
BstXI CCANNNNNNTGG 1 cut(s) 166
BstYI RGATCY 2 cut(s) 313, 469
BsuI GTATCC 1 cut(s) 724
BsuRI GGCC 1 cut(s) 14
BtgI CCRYGG 1 cut(s) 858
BtsI GCAGTG 1 cut(s) 227
BtsIMutI CAGTG 1 cut(s) 227
Cac8I GCNNGC 2 cut(s) 465, 876
Csp6I GTAC 2 cut(s) 9, 512
CviAII CATG 1 cut(s) 859
CviQI GTAC 2 cut(s) 9, 512
DdeI CTNAG 2 cut(s) 216, 705
DpnI GATC 3 cut(s) 315, 471, 745
DpnII GATC 3 cut(s) 313, 469, 743
DraI TTTAAA 1 cut(s) 576
Eam1104I CTCTTC 1 cut(s) 261
EarI CTCTTC 1 cut(s) 261
Ecl136II GAGCTC 1 cut(s) 172
Eco130I CCWWGG 2 cut(s) 699, 858
Eco24I GRGCYC 1 cut(s) 174
Eco32I GATATC 1 cut(s) 251
Eco53kI GAGCTC 1 cut(s) 172
Eco57I CTGAAG 1 cut(s) 785
EcoICRI GAGCTC 1 cut(s) 172
EcoNI CCTNNNNNAGG 1 cut(s) 738
EcoRII CCWGG 1 cut(s) 165
EcoRV GATATC 1 cut(s) 251
EcoT14I CCWWGG 2 cut(s) 699, 858
EcoT22I ATGCAT 1 cut(s) 816
EcoT38I GRGCYC 1 cut(s) 174
ErhI CCWWGG 2 cut(s) 699, 858
FaeI CATG 1 cut(s) 862
FaiI YATR 7 cut(s) 238, 240, 383, 425, 494, 816, 860
FalI AAGNNNNNCTT 2 cut(s) 278, 310
FatI CATG 1 cut(s) 858
FauI CCCGC 3 cut(s) 81, 125, 183
Fnu4HI GCNGC 7 cut(s) 149, 179, 357, 723, 770, 773, 867
FriOI GRGCYC 1 cut(s) 174
Fsp4HI GCNGC 7 cut(s) 149, 179, 357, 723, 770, 773, 867
FspBI CTAG 1 cut(s) 360
GluI GCNGC 7 cut(s) 149, 179, 357, 723, 770, 773, 867
GsuI CTGGAG 2 cut(s) 71, 188
HaeIII GGCC 1 cut(s) 14
Hin1II CATG 1 cut(s) 862
HindIII AAGCTT 2 cut(s) 684, 872
HinfI GANTC 4 cut(s) 63, 269, 332, 625
HphI GGTGA 2 cut(s) 106, 181
Hpy166II GTNNAC 2 cut(s) 651, 673
Hpy188I TCNGA 4 cut(s) 68, 645, 757, 765
Hpy188III TCNNGA 1 cut(s) 741
Hpy8I GTNNAC 2 cut(s) 651, 673
Hpy99I CGWCG 1 cut(s) 58
HpyAV CCTTC 4 cut(s) 25, 50, 196, 705
HpyCH4III ACNGT 3 cut(s) 95, 677, 837
HpyF10VI GCNNNNNNNGC 5 cut(s) 178, 307, 353, 534, 875
HpyF3I CTNAG 2 cut(s) 216, 705
Hsp92II CATG 1 cut(s) 862
KpnI GGTACC 1 cut(s) 515
Kzo9I GATC 3 cut(s) 313, 469, 743
LmnI GCTCC 5 cut(s) 169, 177, 186, 410, 607
Lsp1109I GCAGC 5 cut(s) 165, 368, 756, 784, 878
LweI GCATC 2 cut(s) 125, 356
MaeI CTAG 1 cut(s) 360
MalI GATC 3 cut(s) 315, 471, 745
MboI GATC 3 cut(s) 313, 469, 743
MboII GAAGA 3 cut(s) 278, 286, 353
MflI RGATCY 2 cut(s) 313, 469
MhlI GDGCHC 1 cut(s) 174
MluCI AATT 5 cut(s) 432, 455, 630, 782, 826
MlyI GAGTC 2 cut(s) 278, 619
MmeI TCCRAC 2 cut(s) 236, 388
MnlI CCTC 8 cut(s) 95, 110, 172, 193, 273, 422, 553, 604
Mph1103I ATGCAT 1 cut(s) 816
MroXI GAANNNNTTC 1 cut(s) 293
MseI TTAA 3 cut(s) 533, 575, 785
MslI CAYNNNNRTG 2 cut(s) 237, 497
MspA1I CMGCKG 1 cut(s) 178
MspR9I CCNGG 1 cut(s) 167
MvaI CCWGG 1 cut(s) 167
MwoI GCNNNNNNNGC 5 cut(s) 178, 307, 353, 534, 875
NcoI CCATGG 1 cut(s) 858
NdeII GATC 3 cut(s) 313, 469, 743
NlaIII CATG 1 cut(s) 862
NlaIV GGNNCC 5 cut(s) 210, 315, 513, 603, 615
NsiI ATGCAT 1 cut(s) 816
PdmI GAANNNNTTC 1 cut(s) 293
PfeI GAWTC 2 cut(s) 63, 332
PkrI GCNGC 7 cut(s) 150, 180, 358, 724, 771, 774, 868
PleI GAGTC 2 cut(s) 277, 619
PpsI GAGTC 2 cut(s) 277, 619
Psp124BI GAGCTC 1 cut(s) 174
Psp6I CCWGG 1 cut(s) 165
PspGI CCWGG 1 cut(s) 165
PspN4I GGNNCC 5 cut(s) 210, 315, 513, 603, 615
PstI CTGCAG 2 cut(s) 465, 774
PsuI RGATCY 2 cut(s) 313, 469
RsaI GTAC 2 cut(s) 10, 513
RsaNI GTAC 2 cut(s) 9, 512
RseI CAYNNNNRTG 2 cut(s) 237, 497
SacI GAGCTC 1 cut(s) 174
SaqAI TTAA 3 cut(s) 533, 575, 785
SatI GCNGC 7 cut(s) 149, 179, 357, 723, 770, 773, 867
Sau3AI GATC 3 cut(s) 313, 469, 743
SchI GAGTC 2 cut(s) 278, 619
ScrFI CCNGG 1 cut(s) 167
SduI GDGCHC 1 cut(s) 174
SfaNI GCATC 2 cut(s) 125, 356
SfcI CTRYAG 2 cut(s) 461, 770
SmiMI CAYNNNNRTG 2 cut(s) 237, 497
Sse9I AATT 5 cut(s) 432, 455, 630, 782, 826
SsiI CCGC 5 cut(s) 74, 118, 149, 176, 722
SspMI CTAG 1 cut(s) 360
SstI GAGCTC 1 cut(s) 174
StyD4I CCNGG 1 cut(s) 165
StyI CCWWGG 2 cut(s) 699, 858
TaaI ACNGT 3 cut(s) 95, 677, 837
TaqI TCGA 1 cut(s) 264
TaqII GACCGA 1 cut(s) 212
TasI AATT 5 cut(s) 432, 455, 630, 782, 826
TauI GCSGC 2 cut(s) 151, 725
TfiI GAWTC 2 cut(s) 63, 332
Tru1I TTAA 3 cut(s) 533, 575, 785
Tru9I TTAA 3 cut(s) 533, 575, 785
TscAI CASTG 1 cut(s) 234
TseI GCWGC 5 cut(s) 178, 356, 769, 772, 866
TspDTI ATGAA 4 cut(s) 255, 324, 696, 819
TspGWI ACGGA 1 cut(s) 668
TspRI CASTG 1 cut(s) 234
XagI CCTNNNNNAGG 1 cut(s) 738
XapI RAATTY 1 cut(s) 455
XmnI GAANNNNTTC 1 cut(s) 293
XspI CTAG 1 cut(s) 360
Zsp2I ATGCAT 1 cut(s) 816
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.