Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0003413

Physical Location & Seq

Genomic Coordinates Forward (+)

50648780 .. 50649218

Gene Structure 439 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1405700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGCTTTCTAGATGTTGGTTTGCGCTTTTGTACACGCAGGCAGATCCTTACTTGAAAGGTGTTGTCATACCGGTGCACGACAGGGTTCCTGAAAGCGAGAGCGGATTAGACCCAAAAGTTATGCAAGTAAAGGAAGCTCTATATAGTTTAAATAGCTTGGAAATCAAGCTAAAGCAAGAGAAGTTAAGCGCAATGGAGCTCAAAGACACCGTCCAGAGGCTAGATAATTCCCTGGAATTTGTTAAAGATAATATCTCCATGGTTGCAGCCAAGCTCGCTATACAATCAGTGGAGATGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LON_substr_bdg

Protein Analysis

101

Amino Acids

11.36

Weight (kDa)

5.34

Isoelectric Point (pI)

25.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35340 AT1G35340 AT1G35340 AT1G35340 AT1G35340 AT1G35340 AT1G35340
fragaria_vesca	FvH4_5g26640 FvH4_5g31600 FvH4_5g31600 FvH4_5g31600
malus_domestica	MD04G1056900.v1.1 MD14G1036300.v1.1 MD15G1405700.v1.1
prunus_persica	Prupe.1G555700_v2.0.a1 Prupe.1G555700_v2.0.a1 Prupe.1G555700_v2.0.a1 Prupe.1G555700_v2.0.a1 Prupe.1G555700_v2.0.a1 Prupe.1G555700_v2.0.a1 Prupe.1G555700_v2.0.a1 Prupe.1G555700_v2.0.a1 Prupe.1G555700_v2.0.a1
pyrus_communis	pycom04g05060 pycom15g36250
rosa_chinensis	RchiOBHm_Chr7g0227131
rosa_laevigata	RLG00000001666
rosa_multiflora	Rmu_sc0003153.1_g000021
rosa_roxburghii	Rroxscaffold_3G00232290
rosa_rugosa	Rorug07G0240900
rosa_samantha	Rh7AG390700 Rh7BG375700 Rh7CG409700 Rh7DG388000
rosa_wichuraiana	Rw0G014520 Rw7G032680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	102
AciI	CCGC	1 cut(s)	102
AclWI	GGATC	1 cut(s)	38
AcsI	RAATTY	1 cut(s)	236
AfaI	GTAC	1 cut(s)	32
AfiI	CCNNNNNNNGG	1 cut(s)	216
AgeI	ACCGGT	1 cut(s)	70
AgsI	TTSAA	1 cut(s)	55
AjnI	CCWGG	1 cut(s)	231
AluBI	AGCT	5 cut(s)	137, 156, 169, 199, 274
AluI	AGCT	5 cut(s)	137, 156, 169, 199, 274
Alw21I	GWGCWC	2 cut(s)	78, 201
Alw44I	GTGCAC	1 cut(s)	74
AlwI	GGATC	1 cut(s)	38
ApaLI	GTGCAC	1 cut(s)	74
ApeKI	GCWGC	1 cut(s)	266
ApoI	RAATTY	1 cut(s)	236
ArsI	GACNNNNNNTTYG	2 cut(s)	195, 227
AsiGI	ACCGGT	1 cut(s)	70
AspLEI	GCGC	2 cut(s)	25, 191
BaeGI	GKGCMC	1 cut(s)	78
BanII	GRGCYC	1 cut(s)	201
Bbv12I	GWGCWC	2 cut(s)	78, 201
BbvI	GCAGC	1 cut(s)	278
BciT130I	CCWGG	1 cut(s)	233
BfaI	CTAG	2 cut(s)	9, 221
BisI	GCNGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	268
Bme1390I	CCNGG	1 cut(s)	233
BmiI	GGNNCC	1 cut(s)	87
BmrFI	CCNGG	1 cut(s)	233
BmsI	GCATC	1 cut(s)	285
BsaJI	CCNNGG	2 cut(s)	231, 258
BsaWI	WCCGGW	1 cut(s)	70
BsaXI	ACNNNNNCTCC	1 cut(s)	284
Bsc4I	CCNNNNNNNGG	1 cut(s)	216
Bse118I	RCCGGY	1 cut(s)	70
Bse3DI	GCAATG	1 cut(s)	198
BseBI	CCWGG	1 cut(s)	233
BseDI	CCNNGG	2 cut(s)	231, 258
BseLI	CCNNNNNNNGG	1 cut(s)	216
BseMI	GCAATG	1 cut(s)	198
BseSI	GKGCMC	1 cut(s)	78
BseXI	GCAGC	1 cut(s)	278
BshTI	ACCGGT	1 cut(s)	70
BsiHKAI	GWGCWC	2 cut(s)	78, 201
BsiSI	CCGG	1 cut(s)	71
BslI	CCNNNNNNNGG	1 cut(s)	216
Bsp1286I	GDGCHC	2 cut(s)	78, 201
Bsp1407I	TGTACA	1 cut(s)	30
Bsp143I	GATC	1 cut(s)	43
Bsp19I	CCATGG	1 cut(s)	258
BspACI	CCGC	1 cut(s)	102
BspLI	GGNNCC	1 cut(s)	87
BspPI	GGATC	1 cut(s)	38
BsrBI	CCGCTC	1 cut(s)	102
BsrDI	GCAATG	1 cut(s)	198
BsrFI	RCCGGY	1 cut(s)	70
BsrGI	TGTACA	1 cut(s)	30
BssAI	RCCGGY	1 cut(s)	70
BssECI	CCNNGG	2 cut(s)	231, 258
BssMI	GATC	1 cut(s)	43
BssT1I	CCWWGG	1 cut(s)	258
Bst2UI	CCWGG	1 cut(s)	233
Bst4CI	ACNGT	1 cut(s)	211
BstAUI	TGTACA	1 cut(s)	30
BstC8I	GCNNGC	2 cut(s)	39, 276
BstDSI	CCRYGG	1 cut(s)	258
BstHHI	GCGC	2 cut(s)	25, 191
BstKTI	GATC	1 cut(s)	46
BstMBI	GATC	1 cut(s)	43
BstMWI	GCNNNNNNNGC	1 cut(s)	275
BstNI	CCWGG	1 cut(s)	233
BstSCI	CCNGG	1 cut(s)	231
BstSLI	GKGCMC	1 cut(s)	78
BstV1I	GCAGC	1 cut(s)	278
BstX2I	RGATCY	1 cut(s)	43
BstYI	RGATCY	1 cut(s)	43
BtgI	CCRYGG	1 cut(s)	258
BtsIMutI	CAGTG	1 cut(s)	294
Cac8I	GCNNGC	2 cut(s)	39, 276
CfoI	GCGC	2 cut(s)	25, 191
Cfr10I	RCCGGY	1 cut(s)	70
Csp6I	GTAC	1 cut(s)	31
CspAI	ACCGGT	1 cut(s)	70
CviAII	CATG	1 cut(s)	259
CviJI	RGCY	7 cut(s)	137, 156, 169, 199, 220, 269, 274
CviKI_1	RGCY	7 cut(s)	137, 156, 169, 199, 220, 269, 274
CviQI	GTAC	1 cut(s)	31
DpnI	GATC	1 cut(s)	45
DpnII	GATC	1 cut(s)	43
DraI	TTTAAA	1 cut(s)	150
Ecl136II	GAGCTC	1 cut(s)	199
Eco130I	CCWWGG	1 cut(s)	258
Eco24I	GRGCYC	1 cut(s)	201
Eco53kI	GAGCTC	1 cut(s)	199
EcoICRI	GAGCTC	1 cut(s)	199
EcoRII	CCWGG	1 cut(s)	231
EcoT14I	CCWWGG	1 cut(s)	258
EcoT38I	GRGCYC	1 cut(s)	201
ErhI	CCWWGG	1 cut(s)	258
FaeI	CATG	1 cut(s)	262
FaiI	YATR	6 cut(s)	68, 122, 142, 144, 260, 281
FatI	CATG	1 cut(s)	258
Fnu4HI	GCNGC	1 cut(s)	267
FriOI	GRGCYC	1 cut(s)	201
Fsp4HI	GCNGC	1 cut(s)	267
FspBI	CTAG	2 cut(s)	9, 221
GlaI	GCGC	2 cut(s)	24, 190
GluI	GCNGC	1 cut(s)	267
HapII	CCGG	1 cut(s)	71
HhaI	GCGC	2 cut(s)	25, 191
Hin1II	CATG	1 cut(s)	262
Hin6I	GCGC	2 cut(s)	23, 189
HinP1I	GCGC	2 cut(s)	23, 189
HpaII	CCGG	1 cut(s)	71
Hpy166II	GTNNAC	2 cut(s)	33, 76
Hpy188III	TCNNGA	3 cut(s)	9, 89, 214
Hpy8I	GTNNAC	2 cut(s)	33, 76
HpyCH4III	ACNGT	1 cut(s)	211
HpyCH4V	TGCA	4 cut(s)	76, 124, 266, 298
HpyF10VI	GCNNNNNNNGC	1 cut(s)	275
Hsp92II	CATG	1 cut(s)	262
HspAI	GCGC	2 cut(s)	23, 189
Kzo9I	GATC	1 cut(s)	43
LmnI	GCTCC	1 cut(s)	196
LpnPI	CCDG	7 cut(s)	23, 67, 84, 102, 218, 227, 245
Lsp1109I	GCAGC	1 cut(s)	278
LweI	GCATC	1 cut(s)	285
MaeI	CTAG	2 cut(s)	9, 221
MalI	GATC	1 cut(s)	45
MbiI	CCGCTC	1 cut(s)	102
MboI	GATC	1 cut(s)	43
MflI	RGATCY	1 cut(s)	43
MhlI	GDGCHC	2 cut(s)	78, 201
MluCI	AATT	2 cut(s)	226, 236
MnlI	CCTC	1 cut(s)	210
MseI	TTAA	3 cut(s)	149, 185, 243
MslI	CAYNNNNRTG	1 cut(s)	71
MspI	CCGG	1 cut(s)	71
MspR9I	CCNGG	1 cut(s)	233
MvaI	CCWGG	1 cut(s)	233
MwoI	GCNNNNNNNGC	1 cut(s)	275
NcoI	CCATGG	1 cut(s)	258
NdeII	GATC	1 cut(s)	43
NlaIII	CATG	1 cut(s)	262
NlaIV	GGNNCC	1 cut(s)	87
PflFI	GACNNNGTC	1 cut(s)	209
PinAI	ACCGGT	1 cut(s)	70
PkrI	GCNGC	1 cut(s)	268
Psp124BI	GAGCTC	1 cut(s)	201
Psp6I	CCWGG	1 cut(s)	231
PspGI	CCWGG	1 cut(s)	231
PspN4I	GGNNCC	1 cut(s)	87
PsuI	RGATCY	1 cut(s)	43
PsyI	GACNNNGTC	1 cut(s)	209
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
RseI	CAYNNNNRTG	1 cut(s)	71
SacI	GAGCTC	1 cut(s)	201
SaqAI	TTAA	3 cut(s)	149, 185, 243
SatI	GCNGC	1 cut(s)	267
Sau3AI	GATC	1 cut(s)	43
ScrFI	CCNGG	1 cut(s)	233
SduI	GDGCHC	2 cut(s)	78, 201
SetI	ASST	6 cut(s)	61, 139, 158, 171, 201, 276
SfaNI	GCATC	1 cut(s)	285
SmiMI	CAYNNNNRTG	1 cut(s)	71
Sse9I	AATT	2 cut(s)	226, 236
SsiI	CCGC	1 cut(s)	102
SspMI	CTAG	2 cut(s)	9, 221
SstI	GAGCTC	1 cut(s)	201
StyD4I	CCNGG	1 cut(s)	231
StyI	CCWWGG	1 cut(s)	258
TaaI	ACNGT	1 cut(s)	211
TasI	AATT	2 cut(s)	226, 236
TatI	WGTACW	1 cut(s)	30
Tru1I	TTAA	3 cut(s)	149, 185, 243
Tru9I	TTAA	3 cut(s)	149, 185, 243
TscAI	CASTG	1 cut(s)	294
TseI	GCWGC	1 cut(s)	266
TspRI	CASTG	1 cut(s)	294
Tth111I	GACNNNGTC	1 cut(s)	209
VneI	GTGCAC	1 cut(s)	74
XapI	RAATTY	1 cut(s)	236
XbaI	TCTAGA	1 cut(s)	8
XspI	CTAG	2 cut(s)	9, 221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.