AT1G36730

Translation initiation factor

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
13898210 .. 13900831
2622 bp
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UTR
Exon/CDS
Intron
AT1G36730.1

Sequence Viewer

Length: 1320 bp
ATGGCTTTGCAAAACATTGGTGCCTCCAACCGCGATGATGCCTTTTATAGGTATAAGATGCCGAGGATGATGACCAAGATTGAAGGTAGAGGTAACGGTATCAAGACTAATGTGGTTAACATGGTTGAGATTGCTAAGGCCTTGGGGAGACCTGCTGCTTATACTACTAAGTATTTTGGTTGTGAGCTTGGTGCACAGTCTAAGTTTGATGAGAAGAATGGGACCTCGCTTGTGAATGGGGCTCATGACACTTCCAAACTTGCAGGATTATTGGAGAACTTTATTAAGAAGTATGTTCAGTGTTATGGATGTGGGAATCCTGAAACTGAGATACTTATCACTAAGACGCAGATGCTTCAGCTGAAATGTGCGGCTTGTGGGTTTCTCTCGGATGTTGATATGAGGGACAAGCTAACGTCGTTTATTTTGAAGAATCCTCCAGAGCAGAAGAAGTCGTCTAAGGACAAGAAGTCGATGAGGAGAGCTGAGAAGGAAAGACTCAGAGAAGGTGAAGCAGCTGATGAAGAGATGAGGAAGCTCAAGAAGGAGGCTGCTAGTAAGAAGAAAGCAGCGACCACGGGTACTTCGAAAGACAAAGTGTCGAAGAAGAAAGATCATTCTCCACCTCGAAGCCTGTCTGATGAAAATGACCAAGCAGACAGTGAAGAAGATGATGACGATGTCCAGTGGCAAACAGATACTTCCAGGGAGGCTGCTGAGAAACGTATGAAAGAACAGCTCAGCGCGGTAACAGCTGAAATGGTGATGCTGTCTACAGTTGAAGAAAAAAAGCCAGTAGCTGAGGTGAAGAAGGCACCAGAACAAGTGCATGAGAATGGCAATAGCAAGATCCCTGAAAATGCTCATGAAAAGCTTGTGAATGAGATAAAGGAGCTTCTGAGCAGTGGTTCATCTCCTACCCAACTCAAAACAGCCCTAGCTTCAAACTCAGCAAACCCCCAGGAGAAAATGGACGCCTTATTCTCTGCCCTCTTTGGAGGCACAGGCAAGGGATTCGCAAAAGAGGTGATCAAGAAGAAGAAATATCTCTTGGCCTTGATGATGATGCAAGAAGAAGCAGGAGCTCCTGCGCAGATGGGTTTGCTTAATGGAATTGAATCCTTTTGCATGAAGGCAAGCGCAGAGGCTGCCAAAGAAGTTGCTCTTGTTATCAAAGGTCTTTACGATGAAGACATTTTGGATGAGGATGTGATTGTTGAATGGTACAATAAAGGTGTCAAAAGCTCCCCGGTTTTGAAGAACGTGACTCCGTTCATCGAGTGGCTCCAGAATGCTGAGTCTGAGTCCGAGGAAGAGTGA

Protein Analysis

439

Amino Acids

48.62

Weight (kDa)

6.08

Isoelectric Point (pI)

36.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
eIF-5_eIF-2B PF01873 11 - 127 1.4e-34 Domain found in IF2B/IF5
W2 PF02020 365 - 439 3e-22 eIF4-gamma/eIF5/eIF2-epsilon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1092
Acc36I ACCTGC 1 cut(s) 160
AccB1I GGYRCC 2 cut(s) 20, 814
AccI GTMKAC 1 cut(s) 773
AccII CGCG 2 cut(s) 33, 746
AciI CCGC 3 cut(s) 31, 371, 746
AclWI GGATC 1 cut(s) 844
AcuI CTGAAG 1 cut(s) 341
AcyI GRCGYC 1 cut(s) 975
AfaI GTAC 2 cut(s) 583, 1226
AfiI CCNNNNNNNGG 1 cut(s) 48
AgsI TTSAA 7 cut(s) 83, 430, 782, 945, 1118, 1220, 1258
AhdI GACNNNNNGTC 2 cut(s) 469, 598
AjnI CCWGG 2 cut(s) 704, 960
AjuI GAANNNNNNNTTGG 2 cut(s) 1034, 1066
Alw21I GWGCWC 2 cut(s) 196, 1087
Alw26I GTCTC 1 cut(s) 142
Alw44I GTGCAC 1 cut(s) 192
AlwI GGATC 1 cut(s) 844
AlwNI CAGNNNCTG 2 cut(s) 800, 1148
AoxI GGCC 2 cut(s) 138, 1053
ApaLI GTGCAC 1 cut(s) 192
ApeKI GCWGC 6 cut(s) 155, 515, 551, 569, 713, 1148
AspLEI GCGC 3 cut(s) 746, 1093, 1142
AspS9I GGNCC 1 cut(s) 222
AsuC2I CCSGG 1 cut(s) 1250
AsuHPI GGTGA 4 cut(s) 521, 775, 817, 1039
AsuII TTCGAA 1 cut(s) 587
AvaII GGWCC 1 cut(s) 222
BaeGI GKGCMC 1 cut(s) 196
BanI GGYRCC 2 cut(s) 20, 814
BanII GRGCYC 2 cut(s) 244, 1087
BbsI GAAGAC 1 cut(s) 1197
Bbv12I GWGCWC 2 cut(s) 196, 1087
BbvCI CCTCAGC 1 cut(s) 801
BbvI GCAGC 6 cut(s) 142, 527, 538, 581, 700, 1135
BccI CCATC 1 cut(s) 1090
BcgI CGANNNNNNTGC 2 cut(s) 997, 1031
BciT130I CCWGG 2 cut(s) 706, 962
BclI TGATCA 1 cut(s) 1029
BcnI CCSGG 1 cut(s) 1250
BcoDI GTCTC 1 cut(s) 142
BfaI CTAG 2 cut(s) 555, 938
BfmI CTRYAG 1 cut(s) 774
BfuAI ACCTGC 1 cut(s) 160
BisI GCNGC 7 cut(s) 156, 372, 516, 552, 570, 714, 1149
BlpI GCTNAGC 1 cut(s) 740
BlsI GCNGC 7 cut(s) 157, 373, 517, 553, 571, 715, 1150
Bme1390I CCNGG 3 cut(s) 706, 962, 1250
Bme18I GGWCC 1 cut(s) 222
BmeRI GACNNNNNGTC 2 cut(s) 469, 598
BmgT120I GGNCC 1 cut(s) 222
BmiI GGNNCC 4 cut(s) 22, 223, 816, 1286
BmrFI CCNGG 3 cut(s) 706, 962, 1250
BmsI GCATC 5 cut(s) 28, 48, 342, 756, 1056
BpiI GAAGAC 1 cut(s) 1197
BpmI CTGGAG 2 cut(s) 423, 1271
Bpu10I CCTNAGC 2 cut(s) 135, 801
Bpu1102I GCTNAGC 1 cut(s) 740
Bpu14I TTCGAA 1 cut(s) 587
BpuEI CTTGAG 1 cut(s) 524
BpuMI CCSGG 1 cut(s) 1250
BsaBI GATNNNNATC 1 cut(s) 335
BsaHI GRCGYC 1 cut(s) 975
BsaI GGTCTC 1 cut(s) 142
BsaJI CCNNGG 7 cut(s) 62, 141, 576, 705, 960, 1248, 1308
Bsc4I CCNNNNNNNGG 1 cut(s) 48
Bse1I ACTGG 2 cut(s) 685, 794
Bse8I GATNNNNATC 1 cut(s) 335
BseBI CCWGG 2 cut(s) 706, 962
BseDI CCNNGG 7 cut(s) 62, 141, 576, 705, 960, 1248, 1308
BseGI GGATG 5 cut(s) 72, 314, 397, 1207, 1213
BseJI GATNNNNATC 1 cut(s) 335
BseLI CCNNNNNNNGG 1 cut(s) 48
BseNI ACTGG 2 cut(s) 685, 794
BseRI GAGGAG 1 cut(s) 493
BseSI GKGCMC 1 cut(s) 196
BseXI GCAGC 6 cut(s) 142, 527, 538, 581, 700, 1135
Bsh1236I CGCG 2 cut(s) 33, 746
BshFI GGCC 2 cut(s) 140, 1055
BshNI GGYRCC 2 cut(s) 20, 814
BsiHKAI GWGCWC 2 cut(s) 196, 1087
BsiSI CCGG 1 cut(s) 1250
BslFI GGGAC 2 cut(s) 235, 419
BslI CCNNNNNNNGG 1 cut(s) 48
BsmAI GTCTC 1 cut(s) 142
BsmFI GGGAC 2 cut(s) 235, 419
BsmI GAATGC 1 cut(s) 1297
BsnI GGCC 2 cut(s) 140, 1055
Bso31I GGTCTC 1 cut(s) 142
Bsp119I TTCGAA 1 cut(s) 587
Bsp1286I GDGCHC 3 cut(s) 196, 244, 1087
Bsp143I GATC 3 cut(s) 613, 849, 1029
Bsp1720I GCTNAGC 1 cut(s) 740
BspACI CCGC 3 cut(s) 31, 371, 746
BspANI GGCC 2 cut(s) 140, 1055
BspFNI CGCG 2 cut(s) 33, 746
BspHI TCATGA 2 cut(s) 244, 865
BspLI GGNNCC 4 cut(s) 22, 223, 816, 1286
BspMI ACCTGC 1 cut(s) 160
BspPI GGATC 1 cut(s) 844
BspT104I TTCGAA 1 cut(s) 587
BspT107I GGYRCC 2 cut(s) 20, 814
BspTNI GGTCTC 1 cut(s) 142
BsrI ACTGG 2 cut(s) 685, 794
BssECI CCNNGG 7 cut(s) 62, 141, 576, 705, 960, 1248, 1308
BssMI GATC 3 cut(s) 613, 849, 1029
BssNI GRCGYC 1 cut(s) 975
BssT1I CCWWGG 1 cut(s) 141
Bst2UI CCWGG 2 cut(s) 706, 962
Bst4CI ACNGT 4 cut(s) 98, 198, 662, 778
Bst6I CTCTTC 2 cut(s) 519, 1308
BstACI GRCGYC 1 cut(s) 975
BstAPI GCANNNNNTGC 1 cut(s) 1148
BstBI TTCGAA 1 cut(s) 587
BstC8I GCNNGC 1 cut(s) 1138
BstDSI CCRYGG 1 cut(s) 576
BstENI CCTNNNNNAGG 1 cut(s) 46
BstF5I GGATG 5 cut(s) 72, 314, 397, 1207, 1213
BstFNI CGCG 2 cut(s) 33, 746
BstHHI GCGC 3 cut(s) 746, 1093, 1142
BstKTI GATC 3 cut(s) 616, 852, 1032
BstMAI GTCTC 1 cut(s) 142
BstMBI GATC 3 cut(s) 613, 849, 1029
BstMWI GCNNNNNNNGC 2 cut(s) 752, 1148
BstNI CCWGG 2 cut(s) 706, 962
BstSCI CCNGG 3 cut(s) 704, 960, 1248
BstSFI CTRYAG 1 cut(s) 774
BstSLI GKGCMC 1 cut(s) 196
BstUI CGCG 2 cut(s) 33, 746
BstV1I GCAGC 6 cut(s) 142, 527, 538, 581, 700, 1135
BstV2I GAAGAC 1 cut(s) 1197
BstX2I RGATCY 1 cut(s) 849
BstYI RGATCY 1 cut(s) 849
BsuRI GGCC 2 cut(s) 140, 1055
BtgI CCRYGG 1 cut(s) 576
BtgZI GCGATG 1 cut(s) 48
BtsCI GGATG 5 cut(s) 72, 314, 397, 1207, 1213
BtsI GCAGTG 1 cut(s) 910
BtsIMutI CAGTG 4 cut(s) 305, 667, 692, 910
BveI ACCTGC 1 cut(s) 160
Cac8I GCNNGC 1 cut(s) 1138
CaiI CAGNNNCTG 2 cut(s) 800, 1148
CciI TCATGA 2 cut(s) 244, 865
CfoI GCGC 3 cut(s) 746, 1093, 1142
Cfr13I GGNCC 1 cut(s) 222
CseI GACGC 2 cut(s) 355, 983
Csp6I GTAC 2 cut(s) 582, 1225
CviAII CATG 5 cut(s) 121, 245, 830, 866, 1129
CviQI GTAC 2 cut(s) 582, 1225
DpnI GATC 3 cut(s) 615, 851, 1031
DpnII GATC 3 cut(s) 613, 849, 1029
DriI GACNNNNNGTC 2 cut(s) 469, 598
Eam1104I CTCTTC 2 cut(s) 519, 1308
Eam1105I GACNNNNNGTC 2 cut(s) 469, 598
EarI CTCTTC 2 cut(s) 519, 1308
Ecl136II GAGCTC 1 cut(s) 1085
Eco130I CCWWGG 1 cut(s) 141
Eco147I AGGCCT 1 cut(s) 140
Eco24I GRGCYC 2 cut(s) 244, 1087
Eco31I GGTCTC 1 cut(s) 142
Eco47I GGWCC 1 cut(s) 222
Eco53kI GAGCTC 1 cut(s) 1085
Eco57I CTGAAG 1 cut(s) 341
EcoICRI GAGCTC 1 cut(s) 1085
EcoNI CCTNNNNNAGG 1 cut(s) 46
EcoO109I RGGNCCY 1 cut(s) 222
EcoRII CCWGG 2 cut(s) 704, 960
EcoT14I CCWWGG 1 cut(s) 141
EcoT38I GRGCYC 2 cut(s) 244, 1087
ErhI CCWWGG 1 cut(s) 141
FaeI CATG 5 cut(s) 124, 248, 833, 869, 1132
FalI AAGNNNNNCTT 2 cut(s) 1149, 1181
FaqI GGGAC 2 cut(s) 235, 419
FatI CATG 5 cut(s) 120, 244, 829, 865, 1128
FbaI TGATCA 1 cut(s) 1029
FblI GTMKAC 1 cut(s) 773
Fnu4HI GCNGC 7 cut(s) 156, 372, 516, 552, 570, 714, 1149
FokI GGATG 5 cut(s) 79, 321, 404, 1214, 1220
FriOI GRGCYC 2 cut(s) 244, 1087
Fsp4HI GCNGC 7 cut(s) 156, 372, 516, 552, 570, 714, 1149
FspBI CTAG 2 cut(s) 555, 938
FspI TGCGCA 1 cut(s) 1092
GlaI GCGC 3 cut(s) 745, 1092, 1141
GluI GCNGC 7 cut(s) 156, 372, 516, 552, 570, 714, 1149
GsuI CTGGAG 2 cut(s) 423, 1271
HaeIII GGCC 2 cut(s) 140, 1055
HapII CCGG 1 cut(s) 1250
HgaI GACGC 2 cut(s) 355, 983
HhaI GCGC 3 cut(s) 746, 1093, 1142
Hin1I GRCGYC 1 cut(s) 975
Hin1II CATG 5 cut(s) 124, 248, 833, 869, 1132
Hin6I GCGC 3 cut(s) 744, 1091, 1140
HinP1I GCGC 3 cut(s) 744, 1091, 1140
HincII GTYRAC 1 cut(s) 118
HindII GTYRAC 1 cut(s) 118
HindIII AAGCTT 1 cut(s) 872
HinfI GANTC 8 cut(s) 316, 433, 498, 1014, 1118, 1267, 1298, 1304
HpaI GTTAAC 1 cut(s) 118
HpaII CCGG 1 cut(s) 1250
HphI GGTGA 4 cut(s) 521, 775, 817, 1039
Hpy166II GTNNAC 3 cut(s) 118, 194, 774
Hpy188I TCNGA 6 cut(s) 391, 503, 640, 900, 1303, 1309
Hpy188III TCNNGA 8 cut(s) 103, 245, 320, 440, 541, 866, 1033, 1288
Hpy8I GTNNAC 3 cut(s) 118, 194, 774
Hpy99I CGWCG 1 cut(s) 421
HpyAV CCTTC 6 cut(s) 77, 484, 500, 538, 805, 1126
HpyCH4III ACNGT 4 cut(s) 98, 198, 662, 778
HpyCH4IV ACGT 3 cut(s) 416, 724, 1263
HpyCH4V TGCA 6 cut(s) 10, 194, 263, 829, 1069, 1128
HpyF10VI GCNNNNNNNGC 2 cut(s) 752, 1148
HpySE526I ACGT 3 cut(s) 416, 724, 1263
Hsp92I GRCGYC 1 cut(s) 975
Hsp92II CATG 5 cut(s) 124, 248, 833, 869, 1132
HspAI GCGC 3 cut(s) 744, 1091, 1140
Ksp22I TGATCA 1 cut(s) 1029
KspAI GTTAAC 1 cut(s) 118
Kzo9I GATC 3 cut(s) 613, 849, 1029
LmnI GCTCC 5 cut(s) 892, 1082, 1090, 1250, 1290
Lsp1109I GCAGC 6 cut(s) 142, 527, 538, 581, 700, 1135
LweI GCATC 5 cut(s) 28, 48, 342, 756, 1056
MaeI CTAG 2 cut(s) 555, 938
MaeII ACGT 3 cut(s) 416, 724, 1263
MaeIII GTNAC 3 cut(s) 92, 748, 1264
MalI GATC 3 cut(s) 615, 851, 1031
MboI GATC 3 cut(s) 613, 849, 1029
MflI RGATCY 1 cut(s) 849
MhlI GDGCHC 3 cut(s) 196, 244, 1087
MluCI AATT 1 cut(s) 1113
MlyI GAGTC 4 cut(s) 492, 1261, 1307, 1313
MmeI TCCRAC 1 cut(s) 51
MseI TTAA 3 cut(s) 117, 285, 1107
MslI CAYNNNNRTG 1 cut(s) 834
MspA1I CMGCKG 3 cut(s) 361, 518, 755
MspI CCGG 1 cut(s) 1250
MspR9I CCNGG 3 cut(s) 706, 962, 1250
Mva1269I GAATGC 1 cut(s) 1297
MvaI CCWGG 2 cut(s) 706, 962
MvnI CGCG 2 cut(s) 33, 746
MwoI GCNNNNNNNGC 2 cut(s) 752, 1148
NciI CCSGG 1 cut(s) 1250
NdeII GATC 3 cut(s) 613, 849, 1029
NlaIII CATG 5 cut(s) 124, 248, 833, 869, 1132
NlaIV GGNNCC 4 cut(s) 22, 223, 816, 1286
NmeAIII GCCGAG 1 cut(s) 87
NmuCI GTSAC 1 cut(s) 1264
NsbI TGCGCA 1 cut(s) 1092
NspV TTCGAA 1 cut(s) 587
PagI TCATGA 2 cut(s) 244, 865
PceI AGGCCT 1 cut(s) 140
PcsI WCGNNNNNNNCGW 1 cut(s) 584
PctI GAATGC 1 cut(s) 1297
PfeI GAWTC 4 cut(s) 316, 433, 1014, 1118
PflFI GACNNNGTC 1 cut(s) 680
PkrI GCNGC 7 cut(s) 157, 373, 517, 553, 571, 715, 1150
PleI GAGTC 4 cut(s) 492, 1261, 1306, 1312
PpsI GAGTC 4 cut(s) 492, 1261, 1306, 1312
PpuMI RGGWCCY 1 cut(s) 222
Psp124BI GAGCTC 1 cut(s) 1087
Psp5II RGGWCCY 1 cut(s) 222
Psp6I CCWGG 2 cut(s) 704, 960
PspGI CCWGG 2 cut(s) 704, 960
PspN4I GGNNCC 4 cut(s) 22, 223, 816, 1286
PspPI GGNCC 1 cut(s) 222
PspPPI RGGWCCY 1 cut(s) 222
PstNI CAGNNNCTG 2 cut(s) 800, 1148
PsuI RGATCY 1 cut(s) 849
PsyI GACNNNGTC 1 cut(s) 680
PvuII CAGCTG 3 cut(s) 361, 518, 755
RsaI GTAC 2 cut(s) 583, 1226
RsaNI GTAC 2 cut(s) 582, 1225
RseI CAYNNNNRTG 1 cut(s) 834
SacI GAGCTC 1 cut(s) 1087
SaqAI TTAA 3 cut(s) 117, 285, 1107
SatI GCNGC 7 cut(s) 156, 372, 516, 552, 570, 714, 1149
Sau3AI GATC 3 cut(s) 613, 849, 1029
Sau96I GGNCC 1 cut(s) 222
SchI GAGTC 4 cut(s) 492, 1261, 1307, 1313
ScrFI CCNGG 3 cut(s) 706, 962, 1250
SduI GDGCHC 3 cut(s) 196, 244, 1087
SfaNI GCATC 5 cut(s) 28, 48, 342, 756, 1056
SfcI CTRYAG 1 cut(s) 774
SfuI TTCGAA 1 cut(s) 587
SinI GGWCC 1 cut(s) 222
SmiMI CAYNNNNRTG 1 cut(s) 834
SmlI CTYRAG 1 cut(s) 539
SmoI CTYRAG 1 cut(s) 539
Sse9I AATT 1 cut(s) 1113
SseBI AGGCCT 1 cut(s) 140
SsiI CCGC 3 cut(s) 31, 371, 746
SspMI CTAG 2 cut(s) 555, 938
SstI GAGCTC 1 cut(s) 1087
StuI AGGCCT 1 cut(s) 140
StyD4I CCNGG 3 cut(s) 704, 960, 1248
StyI CCWWGG 1 cut(s) 141
TaaI ACNGT 4 cut(s) 98, 198, 662, 778
TaiI ACGT 3 cut(s) 419, 727, 1266
TaqI TCGA 5 cut(s) 473, 587, 602, 628, 1278
TasI AATT 1 cut(s) 1113
TauI GCSGC 1 cut(s) 374
TfiI GAWTC 4 cut(s) 316, 433, 1014, 1118
Tru1I TTAA 3 cut(s) 117, 285, 1107
Tru9I TTAA 3 cut(s) 117, 285, 1107
TscAI CASTG 4 cut(s) 305, 667, 692, 910
TseFI GTSAC 1 cut(s) 1264
TseI GCWGC 6 cut(s) 155, 515, 551, 569, 713, 1148
Tsp45I GTSAC 1 cut(s) 1264
TspDTI ATGAA 8 cut(s) 537, 657, 743, 882, 900, 1145, 1203, 1264
TspGWI ACGGA 1 cut(s) 1260
TspRI CASTG 4 cut(s) 305, 667, 692, 910
Tth111I GACNNNGTC 1 cut(s) 680
VneI GTGCAC 1 cut(s) 192
VpaK11BI GGWCC 1 cut(s) 222
XagI CCTNNNNNAGG 1 cut(s) 46
XmiI GTMKAC 1 cut(s) 773
XspI CTAG 2 cut(s) 555, 938
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.