Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0009418

Physical Location & Seq

Genomic Coordinates Forward (+)

2720974 .. 2722952

Gene Structure 1979 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000625

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGGCTCTACAGAACATTGGTGCTTCCAACCGTGATGATGCCTTCTACAGGTATAAGATGCCAAGGATGATAACTAAGATTGAAGGTAGAGGAAATGGCATCAAGACTAATGTGGTTAACATGGTGGAAATCGCAAAGGCCTTGGCTAGACCTGCTTCTTATACCACCAAGTATTTTGGCTGTGAGCTTGGAGCACAGTCAAAGTTCGATGAGAAGACTGGAACTTCCCATGTGAATGGTGCTCATGACACTGCAAAGCTTGCTGGACTTCTTGAGAACTTCATTAAGAAATATGTGCAGTGCTATGGTTGTGGGAACCCTGAAACTGAGATTATCATCACTAAGACGCAGATGCTCAATCTCAAATGTGCTGCATGTGGGTTTGTGTCTGATGTTGACATGAGGGACAAGCTTACAACTTTTATCCTCAAGAATCCTCCAGAGCAGAAGAAGTCTGCCAAAGAAAAGAAAGCCATGAGGAGGGCAGACAAAGAGCAGCTTAAGGAAGGGGAGGCTGCTGATGAGGAGCAAAAGAAGCTTAAGAAGGAGGCAGCAAGAAAGAAAGGCACTTCTGGCTCCAAAGTATCAAGCAAGAAGAAAACCACCGGTTCTGATGAGGATCACTCCCCTACTCGGAGCCATGGAGATGTGATTGACCAAGCCGCTGAAGACGATGATGATGATGTCCAGTGGCAGACAGACACATCCATAGAGGCAGCCAAGAAGCGAATTGAGGAGCAGTTGAGTGCTGCTACTGCTGATATGGTCATGCTTTCCACCACAGAAGAGAAGAAAAAATCTCCACCAAAGTCTCCAGAGCGTGAAAAGAAAGCTGAGGCCAAGAGTGAGAATGGTGCTGATAATGCCCATGGGAAGCTTGTTGATGAGATCAAACAATCCTTGAAAGCCGGGAGCAATAGCAGTCAGCTCAAAACCCTTTTGGGTACTCTTTCTGGTACTCCCCAAGAGAAAATGGATGCCTTACTTGAAGCCCTCTTTGAAGGTGTGGGAAAGGGGTTCTCCAAGGAGGTGACCAAGAAGATCAAGTACATTTCTGAAGCAACTATAGCTGAGGGCTCTCAGCTGACTCTGTTGCGTGGACTTGAGTCCTTCTGTGATAAGGCAAACCCTGATGCTACAAAGGAGGTGGCTTTGGTTTTGAAATCACTGTATGATGAAGATGTGCTGGAGGAAGAGTACATTATGAAGTGGTATCAGCAAGGCTTAAGCGGCAAGGCAAAAAGCTCCCAGATTTGGAAGAACATTAAGCCTTTCATTGAGTGGCTCCAGAGTGCTGAGTCGGAGACAGAAGAGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03013 ko04214 map03013 map04214

Pfam Domains

Protein Families

W2 eIF-5_eIF-2B

Protein Analysis

440

Amino Acids

48.56

Weight (kDa)

6.61

Isoelectric Point (pI)

38.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
eIF-5_eIF-2B	PF01873	11 - 127	1.8e-34	Domain found in IF2B/IF5
W2	PF02020	360 - 439	2.7e-22	eIF4-gamma/eIF5/eIF2-epsilon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36730 AT1G77840
fragaria_vesca	FvH4_5g38780
malus_domestica	MD00G1104000.v1.1 MD09G1259500.v1.1 MD15G1359300.v1.1
prunus_persica	Prupe.1G506900_v2.0.a1 Prupe.3G151100_v2.0.a1
pyrus_communis	pycom08g14860 pycom09g17420 pycom15g32170
rosa_chinensis	RchiOBHm_Chr7g0240701
rosa_laevigata	RLG00000000625
rosa_multiflora	Rmu_sc0004799.1_g000002
rosa_roxburghii	Rroxscaffold_3G00219650
rosa_rugosa	Rorug07G0338400 Rorug07G0338400
rosa_samantha	Rh7AG493000 Rh7BG465000 Rh7CG511400 Rh7DG478200
rosa_wichuraiana	Rw7G041700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	160
AciI	CCGC	2 cut(s)	663, 1230
AclWI	GGATC	1 cut(s)	627
AcuI	CTGAAG	2 cut(s)	687, 1077
AfaI	GTAC	4 cut(s)	946, 958, 1049, 1199
AfiI	CCNNNNNNNGG	4 cut(s)	48, 480, 633, 1254
AflII	CTTAAG	3 cut(s)	500, 539, 1225
AgeI	ACCGGT	1 cut(s)	605
AgsI	TTSAA	5 cut(s)	83, 904, 989, 1001, 1162
Alw21I	GWGCWC	2 cut(s)	196, 244
Alw26I	GTCTC	2 cut(s)	816, 1298
AlwI	GGATC	1 cut(s)	627
AoxI	GGCC	2 cut(s)	138, 837
ApeKI	GCWGC	6 cut(s)	371, 496, 515, 551, 716, 749
AsiGI	ACCGGT	1 cut(s)	605
AsuC2I	CCSGG	1 cut(s)	910
AsuHPI	GGTGA	1 cut(s)	1042
BanII	GRGCYC	1 cut(s)	1079
BarI	GAAGNNNNNNTAC	2 cut(s)	1031, 1063
BbsI	GAAGAC	2 cut(s)	221, 675
Bbv12I	GWGCWC	2 cut(s)	196, 244
BbvCI	CCTCAGC	2 cut(s)	834, 1071
BbvI	GCAGC	6 cut(s)	358, 502, 508, 563, 728, 736
BcnI	CCSGG	1 cut(s)	910
BcoDI	GTCTC	2 cut(s)	816, 1298
BfaI	CTAG	1 cut(s)	147
BfmI	CTRYAG	3 cut(s)	8, 46, 1065
BfrI	CTTAAG	3 cut(s)	500, 539, 1225
BfuAI	ACCTGC	1 cut(s)	160
BisI	GCNGC	8 cut(s)	372, 497, 516, 552, 663, 717, 750, 1231
BlsI	GCNGC	8 cut(s)	373, 498, 517, 553, 664, 718, 751, 1232
Bme1390I	CCNGG	1 cut(s)	910
BmiI	GGNNCC	4 cut(s)	317, 577, 638, 1286
BmrFI	CCNGG	1 cut(s)	910
BmsI	GCATC	6 cut(s)	28, 48, 108, 342, 967, 1123
BoxI	GACNNNNGTC	1 cut(s)	1105
BpiI	GAAGAC	2 cut(s)	221, 675
BplI	GAGNNNNNCTC	2 cut(s)	608, 640
BpmI	CTGGAG	4 cut(s)	423, 798, 1208, 1271
Bpu10I	CCTNAGC	2 cut(s)	834, 1071
BpuEI	CTTGAG	3 cut(s)	293, 413, 1124
BpuMI	CCSGG	1 cut(s)	910
BsaBI	GATNNNNATC	2 cut(s)	335, 618
BsaJI	CCNNGG	5 cut(s)	62, 141, 640, 868, 1023
BsaWI	WCCGGW	1 cut(s)	605
BsaXI	ACNNNNNCTCC	2 cut(s)	1181, 1211
Bsc4I	CCNNNNNNNGG	4 cut(s)	48, 480, 633, 1254
Bse118I	RCCGGY	1 cut(s)	605
Bse1I	ACTGG	2 cut(s)	223, 688
Bse8I	GATNNNNATC	2 cut(s)	335, 618
BseDI	CCNNGG	5 cut(s)	62, 141, 640, 868, 1023
BseGI	GGATG	3 cut(s)	72, 704, 982
BseJI	GATNNNNATC	2 cut(s)	335, 618
BseLI	CCNNNNNNNGG	4 cut(s)	48, 480, 633, 1254
BseMII	CTCAG	5 cut(s)	318, 825, 1062, 1094, 1287
BseNI	ACTGG	2 cut(s)	223, 688
BseRI	GAGGAG	3 cut(s)	493, 539, 749
BseXI	GCAGC	6 cut(s)	358, 502, 508, 563, 728, 736
BsgI	GTGCAG	1 cut(s)	317
BshFI	GGCC	2 cut(s)	140, 839
BshTI	ACCGGT	1 cut(s)	605
BsiHKAI	GWGCWC	2 cut(s)	196, 244
BsiSI	CCGG	2 cut(s)	606, 909
BslFI	GGGAC	1 cut(s)	419
BslI	CCNNNNNNNGG	4 cut(s)	48, 480, 633, 1254
BsmAI	GTCTC	2 cut(s)	816, 1298
BsmFI	GGGAC	1 cut(s)	419
BsnI	GGCC	2 cut(s)	140, 839
Bsp1286I	GDGCHC	3 cut(s)	196, 244, 1079
Bsp143I	GATC	3 cut(s)	619, 888, 1041
Bsp19I	CCATGG	2 cut(s)	640, 868
BspACI	CCGC	2 cut(s)	663, 1230
BspANI	GGCC	2 cut(s)	140, 839
BspCNI	CTCAG	5 cut(s)	319, 826, 1063, 1093, 1288
BspHI	TCATGA	1 cut(s)	244
BspLI	GGNNCC	4 cut(s)	317, 577, 638, 1286
BspMI	ACCTGC	1 cut(s)	160
BspPI	GGATC	1 cut(s)	627
BspTI	CTTAAG	3 cut(s)	500, 539, 1225
BsrFI	RCCGGY	1 cut(s)	605
BsrI	ACTGG	2 cut(s)	223, 688
BssAI	RCCGGY	1 cut(s)	605
BssECI	CCNNGG	5 cut(s)	62, 141, 640, 868, 1023
BssMI	GATC	3 cut(s)	619, 888, 1041
BssT1I	CCWWGG	5 cut(s)	62, 141, 640, 868, 1023
Bst4CI	ACNGT	3 cut(s)	32, 198, 1170
Bst6I	CTCTTC	3 cut(s)	780, 1188, 1305
BstAFI	CTTAAG	3 cut(s)	500, 539, 1225
BstAPI	GCANNNNNTGC	1 cut(s)	260
BstC8I	GCNNGC	1 cut(s)	261
BstDEI	CTNAG	7 cut(s)	75, 327, 342, 834, 1071, 1080, 1296
BstDSI	CCRYGG	2 cut(s)	640, 868
BstEII	GGTNACC	1 cut(s)	1030
BstENI	CCTNNNNNAGG	1 cut(s)	46
BstF5I	GGATG	3 cut(s)	72, 704, 982
BstKTI	GATC	3 cut(s)	622, 891, 1044
BstMAI	GTCTC	2 cut(s)	816, 1298
BstMBI	GATC	3 cut(s)	619, 888, 1041
BstMWI	GCNNNNNNNGC	8 cut(s)	152, 260, 535, 573, 755, 863, 1067, 1230
BstNSI	RCATGY	1 cut(s)	378
BstPAI	GACNNNNGTC	1 cut(s)	1105
BstPI	GGTNACC	1 cut(s)	1030
BstSCI	CCNGG	1 cut(s)	908
BstSFI	CTRYAG	3 cut(s)	8, 46, 1065
BstV1I	GCAGC	6 cut(s)	358, 502, 508, 563, 728, 736
BstV2I	GAAGAC	2 cut(s)	221, 675
BstXI	CCANNNNNNTGG	1 cut(s)	236
BsuRI	GGCC	2 cut(s)	140, 839
BtgI	CCRYGG	2 cut(s)	640, 868
BtsCI	GGATG	3 cut(s)	72, 704, 982
BtsI	GCAGTG	2 cut(s)	249, 305
BtsIMutI	CAGTG	4 cut(s)	249, 305, 695, 1166
BveI	ACCTGC	1 cut(s)	160
Cac8I	GCNNGC	1 cut(s)	261
CciI	TCATGA	1 cut(s)	244
Cfr10I	RCCGGY	1 cut(s)	605
CseI	GACGC	1 cut(s)	355
Csp6I	GTAC	4 cut(s)	945, 957, 1048, 1198
CspAI	ACCGGT	1 cut(s)	605
CspCI	CAANNNNNGTGG	2 cut(s)	1128, 1163
CviAII	CATG	9 cut(s)	121, 230, 245, 375, 400, 475, 641, 769, 869
CviQI	GTAC	4 cut(s)	945, 957, 1048, 1198
DdeI	CTNAG	7 cut(s)	75, 327, 342, 834, 1071, 1080, 1296
DpnI	GATC	3 cut(s)	621, 890, 1043
DpnII	GATC	3 cut(s)	619, 888, 1041
Eam1104I	CTCTTC	3 cut(s)	780, 1188, 1305
EarI	CTCTTC	3 cut(s)	780, 1188, 1305
Eco130I	CCWWGG	5 cut(s)	62, 141, 640, 868, 1023
Eco147I	AGGCCT	1 cut(s)	140
Eco24I	GRGCYC	1 cut(s)	1079
Eco57I	CTGAAG	2 cut(s)	687, 1077
Eco91I	GGTNACC	1 cut(s)	1030
EcoNI	CCTNNNNNAGG	1 cut(s)	46
EcoO65I	GGTNACC	1 cut(s)	1030
EcoT14I	CCWWGG	5 cut(s)	62, 141, 640, 868, 1023
EcoT38I	GRGCYC	1 cut(s)	1079
ErhI	CCWWGG	5 cut(s)	62, 141, 640, 868, 1023
FaeI	CATG	9 cut(s)	124, 233, 248, 378, 403, 478, 644, 772, 872
FalI	AAGNNNNNCTT	2 cut(s)	483, 515
FaqI	GGGAC	1 cut(s)	419
FatI	CATG	9 cut(s)	120, 229, 244, 374, 399, 474, 640, 768, 868
Fnu4HI	GCNGC	8 cut(s)	372, 497, 516, 552, 663, 717, 750, 1231
FokI	GGATG	3 cut(s)	79, 691, 989
FriOI	GRGCYC	1 cut(s)	1079
Fsp4HI	GCNGC	8 cut(s)	372, 497, 516, 552, 663, 717, 750, 1231
FspBI	CTAG	1 cut(s)	147
GluI	GCNGC	8 cut(s)	372, 497, 516, 552, 663, 717, 750, 1231
GsuI	CTGGAG	4 cut(s)	423, 798, 1208, 1271
HaeIII	GGCC	2 cut(s)	140, 839
HapII	CCGG	2 cut(s)	606, 909
HgaI	GACGC	1 cut(s)	355
Hin1II	CATG	9 cut(s)	124, 233, 248, 378, 403, 478, 644, 772, 872
HincII	GTYRAC	2 cut(s)	118, 397
HindII	GTYRAC	2 cut(s)	118, 397
HindIII	AAGCTT	4 cut(s)	257, 410, 536, 875
HinfI	GANTC	4 cut(s)	433, 1087, 1106, 1298
HpaI	GTTAAC	1 cut(s)	118
HpaII	CCGG	2 cut(s)	606, 909
HphI	GGTGA	1 cut(s)	1042
Hpy166II	GTNNAC	3 cut(s)	118, 397, 1100
Hpy188I	TCNGA	5 cut(s)	391, 613, 636, 1057, 1303
Hpy188III	TCNNGA	7 cut(s)	103, 245, 272, 430, 440, 815, 1288
Hpy8I	GTNNAC	3 cut(s)	118, 397, 1100
HpyAV	CCTTC	6 cut(s)	52, 77, 500, 538, 995, 1120
HpyCH4III	ACNGT	3 cut(s)	32, 198, 1170
HpyCH4V	TGCA	3 cut(s)	254, 298, 374
HpyF10VI	GCNNNNNNNGC	8 cut(s)	152, 260, 535, 573, 755, 863, 1067, 1230
HpyF3I	CTNAG	7 cut(s)	75, 327, 342, 834, 1071, 1080, 1296
Hsp92II	CATG	9 cut(s)	124, 233, 248, 378, 403, 478, 644, 772, 872
KspAI	GTTAAC	1 cut(s)	118
Kzo9I	GATC	3 cut(s)	619, 888, 1041
LmnI	GCTCC	8 cut(s)	191, 526, 581, 636, 736, 912, 1250, 1290
Lsp1109I	GCAGC	6 cut(s)	358, 502, 508, 563, 728, 736
LweI	GCATC	6 cut(s)	28, 48, 108, 342, 967, 1123
MaeI	CTAG	1 cut(s)	147
MaeIII	GTNAC	1 cut(s)	1030
MalI	GATC	3 cut(s)	621, 890, 1043
MboI	GATC	3 cut(s)	619, 888, 1041
MhlI	GDGCHC	3 cut(s)	196, 244, 1079
MluCI	AATT	1 cut(s)	729
MlyI	GAGTC	3 cut(s)	1081, 1115, 1307
MmeI	TCCRAC	2 cut(s)	51, 1281
MseI	TTAA	6 cut(s)	117, 285, 501, 540, 1226, 1266
MslI	CAYNNNNRTG	2 cut(s)	234, 645
MspA1I	CMGCKG	2 cut(s)	665, 1084
MspCI	CTTAAG	3 cut(s)	500, 539, 1225
MspI	CCGG	2 cut(s)	606, 909
MspR9I	CCNGG	1 cut(s)	910
MwoI	GCNNNNNNNGC	8 cut(s)	152, 260, 535, 573, 755, 863, 1067, 1230
NciI	CCSGG	1 cut(s)	910
NcoI	CCATGG	2 cut(s)	640, 868
NdeII	GATC	3 cut(s)	619, 888, 1041
NlaIII	CATG	9 cut(s)	124, 233, 248, 378, 403, 478, 644, 772, 872
NlaIV	GGNNCC	4 cut(s)	317, 577, 638, 1286
NmuCI	GTSAC	1 cut(s)	1030
NspI	RCATGY	1 cut(s)	378
PagI	TCATGA	1 cut(s)	244
PceI	AGGCCT	1 cut(s)	140
PfeI	GAWTC	1 cut(s)	433
PinAI	ACCGGT	1 cut(s)	605
PkrI	GCNGC	8 cut(s)	373, 498, 517, 553, 664, 718, 751, 1232
PleI	GAGTC	3 cut(s)	1081, 1114, 1306
PpsI	GAGTC	3 cut(s)	1081, 1114, 1306
PshAI	GACNNNNGTC	1 cut(s)	1105
PspEI	GGTNACC	1 cut(s)	1030
PspN4I	GGNNCC	4 cut(s)	317, 577, 638, 1286
PvuII	CAGCTG	1 cut(s)	1084
RsaI	GTAC	4 cut(s)	946, 958, 1049, 1199
RsaNI	GTAC	4 cut(s)	945, 957, 1048, 1198
RseI	CAYNNNNRTG	2 cut(s)	234, 645
SaqAI	TTAA	6 cut(s)	117, 285, 501, 540, 1226, 1266
SatI	GCNGC	8 cut(s)	372, 497, 516, 552, 663, 717, 750, 1231
Sau3AI	GATC	3 cut(s)	619, 888, 1041
SchI	GAGTC	3 cut(s)	1081, 1115, 1307
ScrFI	CCNGG	1 cut(s)	910
SduI	GDGCHC	3 cut(s)	196, 244, 1079
SfaNI	GCATC	6 cut(s)	28, 48, 108, 342, 967, 1123
SfcI	CTRYAG	3 cut(s)	8, 46, 1065
SmiMI	CAYNNNNRTG	2 cut(s)	234, 645
SmlI	CTYRAG	6 cut(s)	272, 428, 500, 539, 1103, 1225
SmoI	CTYRAG	6 cut(s)	272, 428, 500, 539, 1103, 1225
Sse9I	AATT	1 cut(s)	729
SseBI	AGGCCT	1 cut(s)	140
SsiI	CCGC	2 cut(s)	663, 1230
SspMI	CTAG	1 cut(s)	147
StuI	AGGCCT	1 cut(s)	140
StyD4I	CCNGG	1 cut(s)	908
StyI	CCWWGG	5 cut(s)	62, 141, 640, 868, 1023
TaaI	ACNGT	3 cut(s)	32, 198, 1170
TaqI	TCGA	1 cut(s)	207
TasI	AATT	1 cut(s)	729
TatI	WGTACW	2 cut(s)	1047, 1197
TauI	GCSGC	2 cut(s)	665, 1233
TfiI	GAWTC	1 cut(s)	433
Tru1I	TTAA	6 cut(s)	117, 285, 501, 540, 1226, 1266
Tru9I	TTAA	6 cut(s)	117, 285, 501, 540, 1226, 1266
TscAI	CASTG	4 cut(s)	256, 305, 695, 1173
TseFI	GTSAC	1 cut(s)	1030
TseI	GCWGC	6 cut(s)	371, 496, 515, 551, 716, 749
Tsp45I	GTSAC	1 cut(s)	1030
TspDTI	ATGAA	4 cut(s)	271, 1191, 1220, 1264
TspRI	CASTG	4 cut(s)	256, 305, 695, 1173
Vha464I	CTTAAG	3 cut(s)	500, 539, 1225
XagI	CCTNNNNNAGG	1 cut(s)	46
XceI	RCATGY	1 cut(s)	378
XspI	CTAG	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.