MD15G1359300.v1.1

eukaryotic translation initiation factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
43338265 .. 43341429
3165 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1359300.v1.1.491

Sequence Viewer

Length: 1461 bp
ATGGCTCTACAAAACATCGGTGCTTCAAACCGTGATGATGCCTTCTACAGGTATAAGATGCCAAGGATGATCACAAAGATTGAAGGCAGAGGAAATGGCATCAAGACGAATGTGGTTAATATGGTCGATATTGCAAAGGCCTTGGCTAGACCTGCTTCGTACACCACGAAGTATTTTGGCTGTGAGCTTGGAGCCCAATCAAAATTTGATGAGAAGACTGGAACTTCCCATGTGAATGGTGCTCATGACACTGCAAAGCTTGCTGGACTTCTTGAGAACTTCATTAAGAAATATGTGCAGTGCTATGGTTGCGGGAATCCAGAAACTGAAATTATTATAACCAAGACACAGATGCTAAATCTGAAATGTGCTGCATGTGGGTTTGTATCTGATGTTGATATGAGGGACAAGCTTACGACTTTTATCCTCAAGAATCCTCCAGAGCAGAAGAAGACAGCTAAAGAAAAGAAAGCCTTGAGGAGGGCTGACAAAGAACAACTTAAGGAAGGGGAGGCCGCTGACGAGGAGCAAAAGAAGCTTAAGAAGGAGGCAGCAAAGAAGAAAGGAACTTCTGGTTCAAAAGCATCAAGCAAGAAGAAAAACACTGGTTCCGATGAGGATCGCTCCCCAACTCACAGCCAGGGAGATGAGAATGACCAAGCTGCTGAGGAGGACGATGATGACGATGTCCAGTGGCAGACGGACACTTCCTTGGAGGCAGCTAAGAAGCGAATCCAGGAGCAGTTGAGTGCTGTTACTGCTGATATGGTGATGCTTTCTACCGTTGAAGAGGAGAAAAGGTCACCAAAGAAGTCTCCCGATCATGAAGCGAAGAAGCCTGAGACGAAGAGTCATCAGAACGGTGCTGATAATAATACCCATGAAAGACTTGTTAATGAGATCAAACAATCCTTGCAAAAGGGGACTTCTGCAGCTCGGCTTAAATCCTATTTGGGGACTCTTTCTGGCACACCCCAAGAAGTTATGGACGCCCTACTCGAGGCTCTCTTTGAAGGTGTTGGAAAGGGGTTCTCGAAAGTGGTTTCCAAGAAGAAAAACTACCTCGCTGCAGCCACCCAGACAGAGGGATCTCAGACGGTTCTATTGCAAGCTATCGAGTCCTTCAGTGGGAAGGCAAACCCTGATGCCGCAAAGGAAGTGGCTCTGGTTCTGAAATCATTGTATGATGTTGACATTCTGGAGGAGGAATACATTATGAAGTGGTACCAACAGGGCTTAGCTGGGAACAACAAGAGCTCCCCTATTTGGAAGAACTCCAAGCCGTTTATCGAATGGCTCCAGAGCGCCGAGTCGGAGTCAGAGCAAGAGCCTTCTGTTCACCCTTCAGCTGCGCTGTTGATGTCTTTGGTTTTAATGTCGAGTGCGAGTCATTTGGTGGTGGTGGTGGTGGTGGTCTGTGTGATTGTAAGTGACATTGGTTTTCTTTTGCATTTGCCTTAA

Protein Analysis

487

Amino Acids

53.41

Weight (kDa)

6.79

Isoelectric Point (pI)

39.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
eIF-5_eIF-2B PF01873 11 - 127 2.2e-34 Domain found in IF2B/IF5
W2 PF02020 365 - 443 1.4e-19 eIF4-gamma/eIF5/eIF2-epsilon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 338
Acc36I ACCTGC 1 cut(s) 160
Acc65I GGTACC 1 cut(s) 1224
AccB1I GGYRCC 1 cut(s) 1224
AciI CCGC 3 cut(s) 312, 516, 1149
AclWI GGATC 2 cut(s) 627, 1096
AcsI RAATTY 1 cut(s) 203
AcuI CTGAAG 2 cut(s) 1108, 1329
AcyI GRCGYC 1 cut(s) 990
AfaI GTAC 2 cut(s) 161, 1226
AfiI CCNNNNNNNGG 7 cut(s) 48, 480, 954, 1000, 1084, 1128, 1266
AflII CTTAAG 2 cut(s) 500, 539
AgsI TTSAA 5 cut(s) 27, 83, 579, 788, 1013
AhdI GACNNNNNGTC 1 cut(s) 849
AjnI CCWGG 2 cut(s) 639, 735
Alw21I GWGCWC 2 cut(s) 244, 1259
Alw26I GTCTC 2 cut(s) 819, 836
AlwI GGATC 2 cut(s) 627, 1096
AlwNI CAGNNNCTG 1 cut(s) 326
Ama87I CYCGRG 1 cut(s) 998
AoxI GGCC 2 cut(s) 138, 513
ApeKI GCWGC 8 cut(s) 371, 551, 662, 719, 932, 1067, 1070, 1349
ApoI RAATTY 1 cut(s) 203
Asp718I GGTACC 1 cut(s) 1224
AspLEI GCGC 2 cut(s) 1307, 1354
AsuHPI GGTGA 3 cut(s) 781, 795, 1331
AvaI CYCGRG 1 cut(s) 998
BanI GGYRCC 1 cut(s) 1224
BanII GRGCYC 2 cut(s) 196, 1259
BarI GAAGNNNNNNTAC 2 cut(s) 1043, 1075
BbsI GAAGAC 2 cut(s) 221, 458
Bbv12I GWGCWC 2 cut(s) 244, 1259
BbvCI CCTCAGC 1 cut(s) 666
BbvI GCAGC 8 cut(s) 358, 563, 649, 731, 944, 1054, 1082, 1336
BceAI ACGGC 1 cut(s) 1267
BciT130I CCWGG 2 cut(s) 641, 737
BclI TGATCA 1 cut(s) 69
BcoDI GTCTC 2 cut(s) 819, 836
BfaI CTAG 1 cut(s) 147
BfmI CTRYAG 3 cut(s) 46, 930, 1068
BfoI RGCGCY 1 cut(s) 1308
BfrI CTTAAG 2 cut(s) 500, 539
BfuAI ACCTGC 1 cut(s) 160
BlpI GCTNAGC 1 cut(s) 1237
Bme1390I CCNGG 2 cut(s) 641, 737
BmeRI GACNNNNNGTC 1 cut(s) 849
BmeT110I CYCGRG 1 cut(s) 998
BmiI GGNNCC 4 cut(s) 193, 610, 1226, 1298
BmrFI CCNGG 2 cut(s) 641, 737
BmsI GCATC 7 cut(s) 28, 48, 108, 342, 593, 762, 1135
BpiI GAAGAC 2 cut(s) 221, 458
BplI GAGNNNNNCTC 2 cut(s) 608, 640
BpmI CTGGAG 3 cut(s) 423, 1220, 1283
Bpu10I CCTNAGC 1 cut(s) 666
Bpu1102I GCTNAGC 1 cut(s) 1237
BpuEI CTTGAG 3 cut(s) 293, 413, 496
BsaBI GATNNNNATC 1 cut(s) 618
BsaHI GRCGYC 1 cut(s) 990
BsaJI CCNNGG 4 cut(s) 62, 141, 640, 711
BsaXI ACNNNNNCTCC 4 cut(s) 785, 815, 1241, 1271
Bsc4I CCNNNNNNNGG 7 cut(s) 48, 480, 954, 1000, 1084, 1128, 1266
Bse1I ACTGG 3 cut(s) 223, 610, 691
Bse8I GATNNNNATC 1 cut(s) 618
BseBI CCWGG 2 cut(s) 641, 737
BseDI CCNNGG 4 cut(s) 62, 141, 640, 711
BseGI GGATG 1 cut(s) 72
BseJI GATNNNNATC 1 cut(s) 618
BseLI CCNNNNNNNGG 7 cut(s) 48, 480, 954, 1000, 1084, 1128, 1266
BseMII CTCAG 3 cut(s) 657, 831, 1106
BseNI ACTGG 3 cut(s) 223, 610, 691
BseRI GAGGAG 5 cut(s) 493, 539, 683, 806, 1217
BseXI GCAGC 8 cut(s) 358, 563, 649, 731, 944, 1054, 1082, 1336
BseYI CCCAGC 1 cut(s) 1241
BsgI GTGCAG 1 cut(s) 317
BshFI GGCC 2 cut(s) 140, 515
BshNI GGYRCC 1 cut(s) 1224
BsiHKAI GWGCWC 2 cut(s) 244, 1259
BsiHKCI CYCGRG 1 cut(s) 998
BslFI GGGAC 3 cut(s) 419, 937, 970
BslI CCNNNNNNNGG 7 cut(s) 48, 480, 954, 1000, 1084, 1128, 1266
BsmAI GTCTC 2 cut(s) 819, 836
BsmBI CGTCTC 1 cut(s) 836
BsmFI GGGAC 3 cut(s) 419, 937, 970
BsnI GGCC 2 cut(s) 140, 515
BsoBI CYCGRG 1 cut(s) 998
Bsp1286I GDGCHC 3 cut(s) 196, 244, 1259
Bsp143I GATC 5 cut(s) 69, 619, 820, 900, 1088
Bsp1720I GCTNAGC 1 cut(s) 1237
BspACI CCGC 3 cut(s) 312, 516, 1149
BspANI GGCC 2 cut(s) 140, 515
BspCNI CTCAG 3 cut(s) 658, 832, 1105
BspHI TCATGA 2 cut(s) 244, 823
BspLI GGNNCC 4 cut(s) 193, 610, 1226, 1298
BspMAI CTGCAG 2 cut(s) 934, 1072
BspMI ACCTGC 1 cut(s) 160
BspPI GGATC 2 cut(s) 627, 1096
BspT107I GGYRCC 1 cut(s) 1224
BspTI CTTAAG 2 cut(s) 500, 539
BsrI ACTGG 3 cut(s) 223, 610, 691
BssECI CCNNGG 4 cut(s) 62, 141, 640, 711
BssMI GATC 5 cut(s) 69, 619, 820, 900, 1088
BssNI GRCGYC 1 cut(s) 990
BssT1I CCWWGG 3 cut(s) 62, 141, 711
Bst2UI CCWGG 2 cut(s) 641, 737
Bst4CI ACNGT 4 cut(s) 32, 784, 863, 1099
Bst6I CTCTTC 2 cut(s) 783, 842
BstACI GRCGYC 1 cut(s) 990
BstAFI CTTAAG 2 cut(s) 500, 539
BstAPI GCANNNNNTGC 1 cut(s) 260
BstC8I GCNNGC 2 cut(s) 261, 1110
BstDEI CTNAG 5 cut(s) 666, 723, 840, 1092, 1237
BstEII GGTNACC 1 cut(s) 801
BstENI CCTNNNNNAGG 3 cut(s) 46, 478, 998
BstF5I GGATG 1 cut(s) 72
BstH2I RGCGCY 1 cut(s) 1308
BstHHI GCGC 2 cut(s) 1307, 1354
BstKTI GATC 5 cut(s) 72, 622, 823, 903, 1091
BstMAI GTCTC 2 cut(s) 819, 836
BstMBI GATC 5 cut(s) 69, 619, 820, 900, 1088
BstMWI GCNNNNNNNGC 5 cut(s) 152, 260, 309, 535, 758
BstNI CCWGG 2 cut(s) 641, 737
BstNSI RCATGY 1 cut(s) 378
BstPI GGTNACC 1 cut(s) 801
BstSCI CCNGG 2 cut(s) 639, 735
BstSFI CTRYAG 3 cut(s) 46, 930, 1068
BstV1I GCAGC 8 cut(s) 358, 563, 649, 731, 944, 1054, 1082, 1336
BstV2I GAAGAC 2 cut(s) 221, 458
BstX2I RGATCY 1 cut(s) 1088
BstXI CCANNNNNNTGG 1 cut(s) 236
BstYI RGATCY 1 cut(s) 1088
BsuRI GGCC 2 cut(s) 140, 515
BtsCI GGATG 1 cut(s) 72
BtsI GCAGTG 2 cut(s) 249, 305
BtsIMutI CAGTG 5 cut(s) 249, 305, 603, 698, 1132
BveI ACCTGC 1 cut(s) 160
Cac8I GCNNGC 2 cut(s) 261, 1110
CaiI CAGNNNCTG 1 cut(s) 326
CciI TCATGA 2 cut(s) 244, 823
CfoI GCGC 2 cut(s) 1307, 1354
CseI GACGC 1 cut(s) 998
Csp6I GTAC 2 cut(s) 160, 1225
CspCI CAANNNNNGTGG 2 cut(s) 1140, 1175
CviAII CATG 5 cut(s) 230, 245, 375, 824, 881
CviQI GTAC 2 cut(s) 160, 1225
DdeI CTNAG 5 cut(s) 666, 723, 840, 1092, 1237
DpnI GATC 5 cut(s) 71, 621, 822, 902, 1090
DpnII GATC 5 cut(s) 69, 619, 820, 900, 1088
DriI GACNNNNNGTC 1 cut(s) 849
Eam1104I CTCTTC 2 cut(s) 783, 842
Eam1105I GACNNNNNGTC 1 cut(s) 849
EarI CTCTTC 2 cut(s) 783, 842
Ecl136II GAGCTC 1 cut(s) 1257
Eco130I CCWWGG 3 cut(s) 62, 141, 711
Eco147I AGGCCT 1 cut(s) 140
Eco24I GRGCYC 2 cut(s) 196, 1259
Eco53kI GAGCTC 1 cut(s) 1257
Eco57I CTGAAG 2 cut(s) 1108, 1329
Eco88I CYCGRG 1 cut(s) 998
Eco91I GGTNACC 1 cut(s) 801
EcoICRI GAGCTC 1 cut(s) 1257
EcoNI CCTNNNNNAGG 3 cut(s) 46, 478, 998
EcoO65I GGTNACC 1 cut(s) 801
EcoRII CCWGG 2 cut(s) 639, 735
EcoT14I CCWWGG 3 cut(s) 62, 141, 711
EcoT38I GRGCYC 2 cut(s) 196, 1259
ErhI CCWWGG 3 cut(s) 62, 141, 711
Esp3I CGTCTC 1 cut(s) 836
FaeI CATG 5 cut(s) 233, 248, 378, 827, 884
FalI AAGNNNNNCTT 4 cut(s) 458, 490, 483, 515
FaqI GGGAC 3 cut(s) 419, 937, 970
FatI CATG 5 cut(s) 229, 244, 374, 823, 880
FauI CCCGC 1 cut(s) 305
FbaI TGATCA 1 cut(s) 69
FokI GGATG 1 cut(s) 79
FriOI GRGCYC 2 cut(s) 196, 1259
FspBI CTAG 1 cut(s) 147
GlaI GCGC 2 cut(s) 1306, 1353
GsaI CCCAGC 1 cut(s) 1245
GsuI CTGGAG 3 cut(s) 423, 1220, 1283
HaeII RGCGCY 1 cut(s) 1308
HaeIII GGCC 2 cut(s) 140, 515
HgaI GACGC 1 cut(s) 998
HhaI GCGC 2 cut(s) 1307, 1354
Hin1I GRCGYC 1 cut(s) 990
Hin1II CATG 5 cut(s) 233, 248, 378, 827, 884
Hin6I GCGC 2 cut(s) 1305, 1352
HinP1I GCGC 2 cut(s) 1305, 1352
HincII GTYRAC 1 cut(s) 1192
HindII GTYRAC 1 cut(s) 1192
HindIII AAGCTT 3 cut(s) 257, 410, 536
HinfI GANTC 9 cut(s) 316, 433, 732, 850, 958, 1118, 1310, 1316, 1387
HphI GGTGA 3 cut(s) 781, 795, 1331
Hpy166II GTNNAC 3 cut(s) 162, 1192, 1339
Hpy188I TCNGA 8 cut(s) 363, 391, 613, 858, 1095, 1173, 1315, 1321
Hpy8I GTNNAC 3 cut(s) 162, 1192, 1339
HpyAV CCTTC 9 cut(s) 52, 77, 500, 538, 1007, 1126, 1132, 1341, 1353
HpyCH4III ACNGT 4 cut(s) 32, 784, 863, 1099
HpyCH4V TGCA 9 cut(s) 134, 254, 298, 374, 916, 932, 1070, 1108, 1450
HpyF10VI GCNNNNNNNGC 5 cut(s) 152, 260, 309, 535, 758
HpyF3I CTNAG 5 cut(s) 666, 723, 840, 1092, 1237
Hsp92I GRCGYC 1 cut(s) 990
Hsp92II CATG 5 cut(s) 233, 248, 378, 827, 884
HspAI GCGC 2 cut(s) 1305, 1352
KpnI GGTACC 1 cut(s) 1228
Ksp22I TGATCA 1 cut(s) 69
Kzo9I GATC 5 cut(s) 69, 619, 820, 900, 1088
LmnI GCTCC 6 cut(s) 191, 526, 629, 739, 1262, 1302
Lsp1109I GCAGC 8 cut(s) 358, 563, 649, 731, 944, 1054, 1082, 1336
LweI GCATC 7 cut(s) 28, 48, 108, 342, 593, 762, 1135
MaeI CTAG 1 cut(s) 147
MaeIII GTNAC 3 cut(s) 754, 801, 1430
MalI GATC 5 cut(s) 71, 621, 822, 902, 1090
MboI GATC 5 cut(s) 69, 619, 820, 900, 1088
MflI RGATCY 1 cut(s) 1088
MhlI GDGCHC 3 cut(s) 196, 244, 1259
MluCI AATT 2 cut(s) 203, 330
MlyI GAGTC 6 cut(s) 859, 952, 1127, 1319, 1325, 1396
MmeI TCCRAC 2 cut(s) 1000, 1293
MseI TTAA 8 cut(s) 117, 285, 501, 540, 894, 942, 1373, 1459
MslI CAYNNNNRTG 1 cut(s) 234
MspA1I CMGCKG 2 cut(s) 518, 1349
MspCI CTTAAG 2 cut(s) 500, 539
MspR9I CCNGG 2 cut(s) 641, 737
MvaI CCWGG 2 cut(s) 641, 737
MwoI GCNNNNNNNGC 5 cut(s) 152, 260, 309, 535, 758
NdeII GATC 5 cut(s) 69, 619, 820, 900, 1088
NlaIII CATG 5 cut(s) 233, 248, 378, 827, 884
NlaIV GGNNCC 4 cut(s) 193, 610, 1226, 1298
NmeAIII GCCGAG 2 cut(s) 916, 1333
NmuCI GTSAC 2 cut(s) 801, 1430
NspI RCATGY 1 cut(s) 378
PaeR7I CTCGAG 1 cut(s) 998
PagI TCATGA 2 cut(s) 244, 823
PceI AGGCCT 1 cut(s) 140
PcsI WCGNNNNNNNCGW 3 cut(s) 164, 681, 996
PfeI GAWTC 3 cut(s) 316, 433, 732
PflFI GACNNNGTC 1 cut(s) 686
PfoI TCCNGGA 1 cut(s) 735
PleI GAGTC 6 cut(s) 858, 952, 1126, 1318, 1324, 1395
PpsI GAGTC 6 cut(s) 858, 952, 1126, 1318, 1324, 1395
PsiI TTATAA 1 cut(s) 338
Psp124BI GAGCTC 1 cut(s) 1259
Psp6I CCWGG 2 cut(s) 639, 735
PspEI GGTNACC 1 cut(s) 801
PspFI CCCAGC 1 cut(s) 1241
PspGI CCWGG 2 cut(s) 639, 735
PspN4I GGNNCC 4 cut(s) 193, 610, 1226, 1298
PspXI VCTCGAGB 1 cut(s) 998
PstI CTGCAG 2 cut(s) 934, 1072
PstNI CAGNNNCTG 1 cut(s) 326
PsuI RGATCY 1 cut(s) 1088
PsyI GACNNNGTC 1 cut(s) 686
PvuII CAGCTG 1 cut(s) 1349
RsaI GTAC 2 cut(s) 161, 1226
RsaNI GTAC 2 cut(s) 160, 1225
RseI CAYNNNNRTG 1 cut(s) 234
SacI GAGCTC 1 cut(s) 1259
SaqAI TTAA 8 cut(s) 117, 285, 501, 540, 894, 942, 1373, 1459
Sau3AI GATC 5 cut(s) 69, 619, 820, 900, 1088
SchI GAGTC 6 cut(s) 859, 952, 1127, 1319, 1325, 1396
ScrFI CCNGG 2 cut(s) 641, 737
SduI GDGCHC 3 cut(s) 196, 244, 1259
SfaNI GCATC 7 cut(s) 28, 48, 108, 342, 593, 762, 1135
SfcI CTRYAG 3 cut(s) 46, 930, 1068
Sfr274I CTCGAG 1 cut(s) 998
SlaI CTCGAG 1 cut(s) 998
SmiMI CAYNNNNRTG 1 cut(s) 234
SmlI CTYRAG 6 cut(s) 272, 428, 475, 500, 539, 998
SmoI CTYRAG 6 cut(s) 272, 428, 475, 500, 539, 998
Sse9I AATT 2 cut(s) 203, 330
SseBI AGGCCT 1 cut(s) 140
SsiI CCGC 3 cut(s) 312, 516, 1149
SspMI CTAG 1 cut(s) 147
SstI GAGCTC 1 cut(s) 1259
StuI AGGCCT 1 cut(s) 140
StyD4I CCNGG 2 cut(s) 639, 735
StyI CCWWGG 3 cut(s) 62, 141, 711
TaaI ACNGT 4 cut(s) 32, 784, 863, 1099
TaqI TCGA 6 cut(s) 126, 999, 1034, 1116, 1290, 1379
TasI AATT 2 cut(s) 203, 330
TauI GCSGC 2 cut(s) 518, 1151
TfiI GAWTC 3 cut(s) 316, 433, 732
Tru1I TTAA 8 cut(s) 117, 285, 501, 540, 894, 942, 1373, 1459
Tru9I TTAA 8 cut(s) 117, 285, 501, 540, 894, 942, 1373, 1459
TscAI CASTG 5 cut(s) 256, 305, 610, 698, 1132
TseFI GTSAC 2 cut(s) 801, 1430
TseI GCWGC 8 cut(s) 371, 551, 662, 719, 932, 1067, 1070, 1349
Tsp45I GTSAC 2 cut(s) 801, 1430
TspDTI ATGAA 4 cut(s) 271, 840, 897, 1232
TspGWI ACGGA 1 cut(s) 716
TspRI CASTG 5 cut(s) 256, 305, 610, 698, 1132
Tth111I GACNNNGTC 1 cut(s) 686
Vha464I CTTAAG 2 cut(s) 500, 539
XagI CCTNNNNNAGG 3 cut(s) 46, 478, 998
XapI RAATTY 1 cut(s) 203
XceI RCATGY 1 cut(s) 378
XhoI CTCGAG 1 cut(s) 998
XspI CTAG 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.