AT1G77840

eukaryotic translation initiation factor

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
29268336 .. 29270700
2365 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G77840.1

Sequence Viewer

Length: 1314 bp
ATGGCGCTGCAGAACATTGGTGCTTCCAACCGTAACGATGCCTTCTACAGGTACAAGATGCCTAAGATGGTTACCAAAACCGAAGGCAAAGGTAATGGCATTAAGACCAACATTATCAACAATGTTGAGATTGCCAAAGCCTTGGCTAGACCGCCTTCTTATACGACCAAGTACTTTGGTTGTGAGCTTGGAGCGCAGTCTAAGTTTGATGAGAAGACTGGGACGTCGCTTGTGAATGGAGCTCACAACACGTCTAAGCTTGCTGGGCTTTTGGAGAATTTTATTAAGAAGTTTGTTCAGTGTTATGGATGTGGTAACCCGGAGACTGAGATTATTATTACGAAGACGCAGATGGTGAATCTCAAGTGTGCTGCTTGTGGGTTTATCTCTGAGGTCGACATGAGGGATAAGTTGACTAATTTCATTCTCAAGAACCCACCTGAGCAGAAGAAGGTGTCAAAGGATAAGAAAGCAATGAGGAAAGCTGAGAAGGAGAGGCTTAAAGAAGGCGAGCTAGCTGATGAGGAGCAGAGAAAGCTGAAAGCTAAGAAGAAAGCATTGTCTAACGGCAAGGATTCTAAGACGTCTAAGAACCATTCTTCTGATGAGGATATAAGCCCGAAGCATGATGAGAATGCTCTAGAGGTGGATGAGGATGAAGATGATGATGATGGTGTCGAGTGGCAAACTGATACTTCCCGAGAAGCTGCTGAGAAAAGAATGATGGAACAGTTGAGTGCTAAAACTGCCGAAATGGTGATGCTCTCTGCAATGGAAGTAGAAGAGAAAAAGGCGCCCAAAAGCAAATCTAACGGGAACGTTGTGAAAACTGAGAATCCTCCTCCGCAAGAGAAGAATCTCGTGCAGGATATGAAAGAGTATCTGAAGAAAGGGTCACCAATAAGCGCGCTCAAAAGTTTCATCTCGTCTCTCTCTGAACCTCCTCAAGACATCATGGACGCACTCTTCAATGCTCTCTTTGATGGTGTGGGAAAGGGATTCGCCAAAGAAGTGACTAAGAAGAAGAATTACTTAGCGGCTGCTGCAACAATGCAAGAGGATGGATCACAGATGCATCTGCTCAATTCGATTGGGACATTCTGTGGAAAGAATGGAAACGAAGAAGCTTTGAAAGAGGTGGCTCTGGTTCTTAAAGCATTGTACGACCAAGACATCATTGAGGAAGAGGTAGTGTTGGATTGGTACGAAAAGGGTCTCACCGGAGCTGACAAAAGCTCGCCGGTTTGGAAGAATGTTAAGCCTTTTGTGGAGTGGCTTCAGAGCGCTGAGTCTGAGTCCGAAGAGGAGGATTGA

Protein Analysis

437

Amino Acids

48.64

Weight (kDa)

5.49

Isoelectric Point (pI)

37.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
eIF-5_eIF-2B PF01873 11 - 127 2.9e-34 Domain found in IF2B/IF5
W2 PF02020 356 - 436 1.1e-22 eIF4-gamma/eIF5/eIF2-epsilon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 223
AatII GACGTC 2 cut(s) 227, 587
AccB1I GGYRCC 1 cut(s) 793
AccI GTMKAC 1 cut(s) 396
AccII CGCG 1 cut(s) 908
AciI CCGC 3 cut(s) 152, 845, 1037
AclI AACGTT 1 cut(s) 819
AclWI GGATC 1 cut(s) 1072
AcsI RAATTY 1 cut(s) 277
AcuI CTGAAG 2 cut(s) 905, 1262
AcyI GRCGYC 3 cut(s) 224, 584, 794
AfaI GTAC 4 cut(s) 53, 173, 1163, 1205
AfeI AGCGCT 1 cut(s) 1285
AfiI CCNNNNNNNGG 1 cut(s) 48
AflIII ACRYGT 1 cut(s) 249
AgsI TTSAA 2 cut(s) 970, 1132
AjiI CACGTC 1 cut(s) 252
Alw21I GWGCWC 1 cut(s) 244
Alw26I GTCTC 3 cut(s) 317, 933, 1220
AlwI GGATC 1 cut(s) 1072
Ama87I CYCGRG 1 cut(s) 699
Aor51HI AGCGCT 1 cut(s) 1285
ApeKI GCWGC 5 cut(s) 7, 371, 707, 1040, 1043
ApoI RAATTY 1 cut(s) 277
AspLEI GCGC 6 cut(s) 7, 196, 796, 908, 910, 1286
AsuC2I CCSGG 1 cut(s) 320
AsuHPI GGTGA 4 cut(s) 367, 769, 888, 1210
AsuNHI GCTAGC 1 cut(s) 514
AvaI CYCGRG 1 cut(s) 699
BanI GGYRCC 1 cut(s) 793
BanII GRGCYC 1 cut(s) 244
BarI GAAGNNNNNNTAC 2 cut(s) 1013, 1045
BauI CACGAG 1 cut(s) 860
BbsI GAAGAC 2 cut(s) 221, 350
Bbv12I GWGCWC 1 cut(s) 244
BbvI GCAGC 4 cut(s) 358, 694, 1027, 1030
BccI CCATC 6 cut(s) 61, 346, 665, 718, 977, 1055
BceAI ACGGC 1 cut(s) 583
BcnI CCSGG 1 cut(s) 320
BcoDI GTCTC 3 cut(s) 317, 933, 1220
BfaI CTAG 3 cut(s) 147, 515, 641
BfmI CTRYAG 2 cut(s) 8, 46
BfoI RGCGCY 3 cut(s) 8, 797, 1287
BisI GCNGC 6 cut(s) 8, 372, 708, 1038, 1041, 1044
BlsI GCNGC 6 cut(s) 9, 373, 709, 1039, 1042, 1045
BmcAI AGTACT 1 cut(s) 173
Bme1390I CCNGG 1 cut(s) 320
BmeT110I CYCGRG 1 cut(s) 699
BmgBI CACGTC 1 cut(s) 252
BmiI GGNNCC 1 cut(s) 795
BmrFI CCNGG 1 cut(s) 320
BmrI ACTGGG 1 cut(s) 228
BmsI GCATC 5 cut(s) 28, 48, 750, 1062, 1084
BmtI GCTAGC 1 cut(s) 518
BmuI ACTGGG 1 cut(s) 228
BpiI GAAGAC 2 cut(s) 221, 350
Bpu10I CCTNAGC 1 cut(s) 441
BpuEI CTTGAG 3 cut(s) 347, 413, 930
BpuMI CCSGG 1 cut(s) 320
BsaHI GRCGYC 3 cut(s) 224, 584, 794
BsaI GGTCTC 1 cut(s) 1220
BsaJI CCNNGG 1 cut(s) 141
BsaWI WCCGGW 1 cut(s) 1220
Bsc4I CCNNNNNNNGG 1 cut(s) 48
Bse118I RCCGGY 1 cut(s) 1240
Bse1I ACTGG 1 cut(s) 223
Bse3DI GCAATG 2 cut(s) 480, 777
BseDI CCNNGG 1 cut(s) 141
BseGI GGATG 4 cut(s) 314, 655, 661, 1066
BseLI CCNNNNNNNGG 1 cut(s) 48
BseMI GCAATG 2 cut(s) 480, 777
BseMII CTCAG 8 cut(s) 318, 381, 432, 477, 702, 822, 1278, 1284
BseNI ACTGG 1 cut(s) 223
BsePI GCGCGC 1 cut(s) 906
BseRI GAGGAG 3 cut(s) 539, 831, 933
BseXI GCAGC 4 cut(s) 358, 694, 1027, 1030
BseYI CCCAGC 1 cut(s) 263
BsgI GTGCAG 1 cut(s) 884
Bsh1236I CGCG 1 cut(s) 908
BshNI GGYRCC 1 cut(s) 793
BsiHKAI GWGCWC 1 cut(s) 244
BsiHKCI CYCGRG 1 cut(s) 699
BsiSI CCGG 3 cut(s) 320, 1221, 1241
BslFI GGGAC 2 cut(s) 235, 1108
BslI CCNNNNNNNGG 1 cut(s) 48
BsmAI GTCTC 3 cut(s) 317, 933, 1220
BsmBI CGTCTC 1 cut(s) 933
BsmFI GGGAC 2 cut(s) 235, 1108
BsmI GAATGC 1 cut(s) 640
Bso31I GGTCTC 1 cut(s) 1220
BsoBI CYCGRG 1 cut(s) 699
Bsp1286I GDGCHC 1 cut(s) 244
Bsp143I GATC 1 cut(s) 1064
BspACI CCGC 3 cut(s) 152, 845, 1037
BspCNI CTCAG 8 cut(s) 319, 382, 433, 478, 703, 823, 1279, 1285
BspFNI CGCG 1 cut(s) 908
BspLI GGNNCC 1 cut(s) 795
BspMAI CTGCAG 1 cut(s) 12
BspOI GCTAGC 1 cut(s) 518
BspPI GGATC 1 cut(s) 1072
BspT107I GGYRCC 1 cut(s) 793
BspTNI GGTCTC 1 cut(s) 1220
BsrDI GCAATG 2 cut(s) 480, 777
BsrFI RCCGGY 1 cut(s) 1240
BsrI ACTGG 1 cut(s) 223
BssAI RCCGGY 1 cut(s) 1240
BssECI CCNNGG 1 cut(s) 141
BssHII GCGCGC 1 cut(s) 906
BssMI GATC 1 cut(s) 1064
BssNI GRCGYC 3 cut(s) 224, 584, 794
BssSI CACGAG 1 cut(s) 860
BssT1I CCWWGG 1 cut(s) 141
Bst2BI CACGAG 1 cut(s) 860
Bst4CI ACNGT 2 cut(s) 32, 732
Bst6I CTCTTC 4 cut(s) 777, 971, 1179, 1296
BstACI GRCGYC 3 cut(s) 224, 584, 794
BstC8I GCNNGC 5 cut(s) 261, 512, 516, 908, 1238
BstEII GGTNACC 3 cut(s) 70, 314, 894
BstENI CCTNNNNNAGG 1 cut(s) 46
BstF5I GGATG 4 cut(s) 314, 655, 661, 1066
BstFNI CGCG 1 cut(s) 908
BstH2I RGCGCY 3 cut(s) 8, 797, 1287
BstHHI GCGC 6 cut(s) 7, 196, 796, 908, 910, 1286
BstKTI GATC 1 cut(s) 1067
BstMAI GTCTC 3 cut(s) 317, 933, 1220
BstMBI GATC 1 cut(s) 1064
BstMWI GCNNNNNNNGC 5 cut(s) 193, 265, 535, 746, 1043
BstPI GGTNACC 3 cut(s) 70, 314, 894
BstSCI CCNGG 1 cut(s) 318
BstSFI CTRYAG 2 cut(s) 8, 46
BstUI CGCG 1 cut(s) 908
BstV1I GCAGC 4 cut(s) 358, 694, 1027, 1030
BstV2I GAAGAC 2 cut(s) 221, 350
BstXI CCANNNNNNTGG 1 cut(s) 142
BtrI CACGTC 1 cut(s) 252
BtsCI GGATG 4 cut(s) 314, 655, 661, 1066
BtsIMutI CAGTG 1 cut(s) 305
Cac8I GCNNGC 5 cut(s) 261, 512, 516, 908, 1238
CfoI GCGC 6 cut(s) 7, 196, 796, 908, 910, 1286
Cfr10I RCCGGY 1 cut(s) 1240
CseI GACGC 2 cut(s) 355, 968
Csp6I GTAC 4 cut(s) 52, 172, 1162, 1204
CviAII CATG 3 cut(s) 400, 626, 955
CviQI GTAC 4 cut(s) 52, 172, 1162, 1204
DinI GGCGCC 1 cut(s) 795
DpnI GATC 1 cut(s) 1066
DpnII GATC 1 cut(s) 1064
DrdI GACNNNNNNGTC 1 cut(s) 223
DseDI GACNNNNNNGTC 1 cut(s) 223
Eam1104I CTCTTC 4 cut(s) 777, 971, 1179, 1296
EarI CTCTTC 4 cut(s) 777, 971, 1179, 1296
Ecl136II GAGCTC 1 cut(s) 242
Eco130I CCWWGG 1 cut(s) 141
Eco24I GRGCYC 1 cut(s) 244
Eco31I GGTCTC 1 cut(s) 1220
Eco47III AGCGCT 1 cut(s) 1285
Eco53kI GAGCTC 1 cut(s) 242
Eco57I CTGAAG 2 cut(s) 905, 1262
Eco88I CYCGRG 1 cut(s) 699
Eco91I GGTNACC 3 cut(s) 70, 314, 894
EcoICRI GAGCTC 1 cut(s) 242
EcoNI CCTNNNNNAGG 1 cut(s) 46
EcoO65I GGTNACC 3 cut(s) 70, 314, 894
EcoT14I CCWWGG 1 cut(s) 141
EcoT22I ATGCAT 1 cut(s) 1077
EcoT38I GRGCYC 1 cut(s) 244
EgeI GGCGCC 1 cut(s) 795
EheI GGCGCC 1 cut(s) 795
ErhI CCWWGG 1 cut(s) 141
Esp3I CGTCTC 1 cut(s) 933
FaeI CATG 3 cut(s) 403, 629, 958
FaiI YATR 7 cut(s) 162, 306, 401, 614, 627, 872, 956
FalI AAGNNNNNCTT 2 cut(s) 1016, 1048
FaqI GGGAC 2 cut(s) 235, 1108
FatI CATG 3 cut(s) 399, 625, 954
FblI GTMKAC 1 cut(s) 396
Fnu4HI GCNGC 6 cut(s) 8, 372, 708, 1038, 1041, 1044
FokI GGATG 4 cut(s) 321, 662, 668, 1073
FriOI GRGCYC 1 cut(s) 244
Fsp4HI GCNGC 6 cut(s) 8, 372, 708, 1038, 1041, 1044
FspBI CTAG 3 cut(s) 147, 515, 641
GlaI GCGC 6 cut(s) 6, 195, 795, 907, 909, 1285
GluI GCNGC 6 cut(s) 8, 372, 708, 1038, 1041, 1044
GsaI CCCAGC 1 cut(s) 267
HaeII RGCGCY 3 cut(s) 8, 797, 1287
HapII CCGG 3 cut(s) 320, 1221, 1241
HgaI GACGC 2 cut(s) 355, 968
HhaI GCGC 6 cut(s) 7, 196, 796, 908, 910, 1286
Hin1I GRCGYC 3 cut(s) 224, 584, 794
Hin1II CATG 3 cut(s) 403, 629, 958
Hin6I GCGC 6 cut(s) 5, 194, 794, 906, 908, 1284
HinP1I GCGC 6 cut(s) 5, 194, 794, 906, 908, 1284
HincII GTYRAC 2 cut(s) 397, 414
HindII GTYRAC 2 cut(s) 397, 414
HindIII AAGCTT 2 cut(s) 257, 1125
HinfI GANTC 7 cut(s) 358, 575, 835, 856, 999, 1289, 1295
HpaII CCGG 3 cut(s) 320, 1221, 1241
HphI GGTGA 4 cut(s) 367, 769, 888, 1210
Hpy166II GTNNAC 2 cut(s) 397, 414
Hpy188I TCNGA 7 cut(s) 391, 604, 885, 937, 1281, 1294, 1300
Hpy188III TCNNGA 4 cut(s) 430, 641, 699, 947
Hpy8I GTNNAC 2 cut(s) 397, 414
Hpy99I CGWCG 1 cut(s) 229
HpyAV CCTTC 6 cut(s) 52, 77, 165, 445, 484, 500
HpyCH4III ACNGT 2 cut(s) 32, 732
HpyCH4IV ACGT 4 cut(s) 224, 251, 584, 819
HpyCH4V TGCA 6 cut(s) 10, 770, 865, 1046, 1054, 1075
HpyF10VI GCNNNNNNNGC 5 cut(s) 193, 265, 535, 746, 1043
HpySE526I ACGT 4 cut(s) 224, 251, 584, 819
Hsp92I GRCGYC 3 cut(s) 224, 584, 794
Hsp92II CATG 3 cut(s) 403, 629, 958
HspAI GCGC 6 cut(s) 5, 194, 794, 906, 908, 1284
KasI GGCGCC 1 cut(s) 793
Kzo9I GATC 1 cut(s) 1064
LmnI GCTCC 4 cut(s) 191, 239, 526, 1223
LpnPI CCDG 9 cut(s) 34, 204, 249, 333, 453, 851, 1130, 1234, 1254
Lsp1109I GCAGC 4 cut(s) 358, 694, 1027, 1030
LweI GCATC 5 cut(s) 28, 48, 750, 1062, 1084
MaeI CTAG 3 cut(s) 147, 515, 641
MaeII ACGT 4 cut(s) 224, 251, 584, 819
MaeIII GTNAC 5 cut(s) 32, 70, 314, 894, 1012
MalI GATC 1 cut(s) 1066
MboI GATC 1 cut(s) 1064
MhlI GDGCHC 1 cut(s) 244
MluCI AATT 4 cut(s) 277, 418, 1027, 1084
Mly113I GGCGCC 1 cut(s) 794
MlyI GAGTC 2 cut(s) 1298, 1304
MmeI TCCRAC 2 cut(s) 51, 1176
Mph1103I ATGCAT 1 cut(s) 1077
MseI TTAA 5 cut(s) 102, 285, 501, 1152, 1257
MspI CCGG 3 cut(s) 320, 1221, 1241
MspR9I CCNGG 1 cut(s) 320
Mva1269I GAATGC 1 cut(s) 640
MvnI CGCG 1 cut(s) 908
MwoI GCNNNNNNNGC 5 cut(s) 193, 265, 535, 746, 1043
NarI GGCGCC 1 cut(s) 794
NciI CCSGG 1 cut(s) 320
NdeII GATC 1 cut(s) 1064
NheI GCTAGC 1 cut(s) 514
NlaIII CATG 3 cut(s) 403, 629, 958
NlaIV GGNNCC 1 cut(s) 795
NmuCI GTSAC 2 cut(s) 894, 1012
NsiI ATGCAT 1 cut(s) 1077
PauI GCGCGC 1 cut(s) 906
PctI GAATGC 1 cut(s) 640
PfeI GAWTC 5 cut(s) 358, 575, 835, 856, 999
PkrI GCNGC 6 cut(s) 9, 373, 709, 1039, 1042, 1045
PleI GAGTC 2 cut(s) 1297, 1303
PluTI GGCGCC 1 cut(s) 797
PpsI GAGTC 2 cut(s) 1297, 1303
Psp124BI GAGCTC 1 cut(s) 244
Psp1406I AACGTT 1 cut(s) 819
PspEI GGTNACC 3 cut(s) 70, 314, 894
PspFI CCCAGC 1 cut(s) 263
PspN4I GGNNCC 1 cut(s) 795
PstI CTGCAG 1 cut(s) 12
PteI GCGCGC 1 cut(s) 906
RsaI GTAC 4 cut(s) 53, 173, 1163, 1205
RsaNI GTAC 4 cut(s) 52, 172, 1162, 1204
SacI GAGCTC 1 cut(s) 244
SalI GTCGAC 1 cut(s) 395
SaqAI TTAA 5 cut(s) 102, 285, 501, 1152, 1257
SatI GCNGC 6 cut(s) 8, 372, 708, 1038, 1041, 1044
Sau3AI GATC 1 cut(s) 1064
ScaI AGTACT 1 cut(s) 173
SchI GAGTC 2 cut(s) 1298, 1304
ScrFI CCNGG 1 cut(s) 320
SduI GDGCHC 1 cut(s) 244
SfaNI GCATC 5 cut(s) 28, 48, 750, 1062, 1084
SfcI CTRYAG 2 cut(s) 8, 46
SfoI GGCGCC 1 cut(s) 795
SmlI CTYRAG 3 cut(s) 362, 428, 945
SmoI CTYRAG 3 cut(s) 362, 428, 945
Sse9I AATT 4 cut(s) 277, 418, 1027, 1084
SsiI CCGC 3 cut(s) 152, 845, 1037
SspDI GGCGCC 1 cut(s) 793
SspMI CTAG 3 cut(s) 147, 515, 641
SstI GAGCTC 1 cut(s) 244
StyD4I CCNGG 1 cut(s) 318
StyI CCWWGG 1 cut(s) 141
TaaI ACNGT 2 cut(s) 32, 732
TaiI ACGT 4 cut(s) 227, 254, 587, 822
TaqI TCGA 3 cut(s) 396, 678, 1088
TasI AATT 4 cut(s) 277, 418, 1027, 1084
TatI WGTACW 1 cut(s) 171
TauI GCSGC 1 cut(s) 1040
TfiI GAWTC 5 cut(s) 358, 575, 835, 856, 999
Tru1I TTAA 5 cut(s) 102, 285, 501, 1152, 1257
Tru9I TTAA 5 cut(s) 102, 285, 501, 1152, 1257
TscAI CASTG 1 cut(s) 305
TseFI GTSAC 2 cut(s) 894, 1012
TseI GCWGC 5 cut(s) 7, 371, 707, 1040, 1043
Tsp45I GTSAC 2 cut(s) 894, 1012
TspDTI ATGAA 4 cut(s) 412, 672, 887, 910
TspRI CASTG 1 cut(s) 305
XagI CCTNNNNNAGG 1 cut(s) 46
XapI RAATTY 1 cut(s) 277
XbaI TCTAGA 1 cut(s) 640
XmiI GTMKAC 1 cut(s) 396
XspI CTAG 3 cut(s) 147, 515, 641
ZraI GACGTC 2 cut(s) 225, 585
ZrmI AGTACT 1 cut(s) 173
Zsp2I ATGCAT 1 cut(s) 1077
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.