pycom08g14860

eukaryotic translation initiation factor

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Forward (+)
14275158 .. 14276486
1329 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g14860.1

Sequence Viewer

Length: 1329 bp
ATGGCTCTACAAAACATTGGTGCTTCAAACCGTGATGATGCCTTCTACAGGTATAAGATGCCAAGGATGATCACTAAGATTGAAGGCAGAGGAAATGGCATCAAGACTAATGTGGTTAACATGGTCGATATTGCAAAGGCCTTGGCTAGACCTGCTTCCTACACTACAAAGTATTTTGGCTGTGAGCTTGGAGCCCAATCAAAATTTGATGAGAAGACTGGAACTTCCCATGTGAATGGTGCTCATGACACCGCTAAGCTTGCTGGACTTCTTGAGAACTTCATCAAGAAATATGTGCAGTGCTATGGTTGCGGAAACCCAGAAACCGAAATTATTATAACCAAGACGCAGATGCTAAATCTGAAATGTGCTGCATGTGGGTTTGTGTCTGATGTTGATATGAGGGACAAGCTCACAACTTTTATCCTTAAGAATCCTCCAGAGCAGAAGAAGGCGGCTAAAGGAAAGAAAGGCTTGAGGAGGGCCGACAAAGAACAACTTAAGGAAGGGGAGGCCGCTGACGAGGAGCAAAAGAAGCTTAAGAAGGAGGCAGCAAAGAAGAAGGGAACTTCGGGTTCAAGAGCATCAAGCAAGAAGAAAAGCAATGGTTCCGATGAGGATCGCTCCCCGGCTCACAGCCAGGGAGATGAGAACGACCAAGCTGCTGAGGAGGATGGGGACGATGATGTCGAGTGGCAGACGGACACTTCCGTGGAGGCTGCTAAGAAGCGAATCCAGGAGCAGTTGAGTGCTGTTACTGCTGATATGGTGATGCTTTCTACCATTGAAGAGAAAAAGTCACCAAAGCAGTCTCCTGATCGTGAAGTGAAGAAGCCTGAGACAAAGAGCCATCAGAACGGAGCTGATTGTTATACCCACGAAAGACTTGTTAATGAGATCAAACAATCCTTGCAAAAGGGGATGTCTGCAGCTCAGCTTAAATCCTTTTTGGGCACTCTTTCTGGCACACCCCAAGAGGTTATGGATGCCCTACTCGAGGCTCTCTTTGAAGGTGTGGGAAAGGGGTTCTCTAAGGAGGTTTCTAAGAAGAAAAACTACCTGGCTGCAGCAACCCAGAAGGAGGGATCTCAGACAGTTCTATTGCAAGCTATCGAGTCTTTCAGTGGGAAGGCAAACCCTGATGCTGGAAAGGAAGTGGCTCTGGTTCTAAAACTGTTGTACGATGTTGACATTCTGGAGGAGGAATACATTATGAAGTGGTACCAACGGGGCGTAGCTGGGAAGAGCAAGAGCTCCCCGATTTGGAAGAATGCCAAGCCGTTCATCGGGTGGCTCCAGAGCGCCGAGTCTGAAACGGAGGAAGAGTGA

Protein Analysis

443

Amino Acids

48.7

Weight (kDa)

8.25

Isoelectric Point (pI)

37.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
eIF-5_eIF-2B PF01873 11 - 127 1.9e-34 Domain found in IF2B/IF5
W2 PF02020 364 - 442 5e-19 eIF4-gamma/eIF5/eIF2-epsilon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 338
AasI GACNNNNNNGTC 1 cut(s) 686
Acc36I ACCTGC 1 cut(s) 160
Acc65I GGTACC 1 cut(s) 1221
AccB1I GGYRCC 1 cut(s) 1221
AciI CCGC 4 cut(s) 252, 312, 455, 516
AclWI GGATC 2 cut(s) 627, 1093
AcsI RAATTY 1 cut(s) 203
AfaI GTAC 2 cut(s) 1181, 1223
AfiI CCNNNNNNNGG 6 cut(s) 48, 997, 1081, 1145, 1263, 1286
AflII CTTAAG 3 cut(s) 428, 500, 539
AgsI TTSAA 5 cut(s) 27, 83, 579, 788, 1010
AjnI CCWGG 3 cut(s) 639, 735, 1059
AleI CACNNNNGTG 1 cut(s) 710
Alw21I GWGCWC 2 cut(s) 244, 1256
Alw26I GTCTC 2 cut(s) 816, 833
AlwI GGATC 2 cut(s) 627, 1093
Ama87I CYCGRG 1 cut(s) 995
AoxI GGCC 3 cut(s) 138, 483, 513
ApeKI GCWGC 7 cut(s) 371, 551, 662, 719, 929, 1064, 1067
ApoI RAATTY 1 cut(s) 203
Asp718I GGTACC 1 cut(s) 1221
AspLEI GCGC 1 cut(s) 1304
AspS9I GGNCC 1 cut(s) 483
AsuC2I CCSGG 1 cut(s) 629
AsuHPI GGTGA 2 cut(s) 781, 792
AvaI CYCGRG 1 cut(s) 995
BaeGI GKGCMC 1 cut(s) 956
BanI GGYRCC 1 cut(s) 1221
BanII GRGCYC 2 cut(s) 196, 1256
BarI GAAGNNNNNNTAC 2 cut(s) 1040, 1072
BbsI GAAGAC 1 cut(s) 221
Bbv12I GWGCWC 2 cut(s) 244, 1256
BbvCI CCTCAGC 1 cut(s) 666
BbvI GCAGC 7 cut(s) 358, 563, 649, 706, 941, 1051, 1079
BccI CCATC 2 cut(s) 668, 858
BceAI ACGGC 1 cut(s) 1264
BcgI CGANNNNNNTGC 2 cut(s) 644, 678
BciT130I CCWGG 3 cut(s) 641, 737, 1061
BclI TGATCA 1 cut(s) 69
BcnI CCSGG 1 cut(s) 629
BcoDI GTCTC 2 cut(s) 816, 833
BfaI CTAG 1 cut(s) 147
BfmI CTRYAG 3 cut(s) 46, 927, 1065
BfoI RGCGCY 1 cut(s) 1305
BfrI CTTAAG 3 cut(s) 428, 500, 539
BfuAI ACCTGC 1 cut(s) 160
BisI GCNGC 9 cut(s) 372, 456, 516, 552, 663, 720, 930, 1065, 1068
BlpI GCTNAGC 2 cut(s) 255, 933
BlsI GCNGC 9 cut(s) 373, 457, 517, 553, 664, 721, 931, 1066, 1069
Bme1390I CCNGG 4 cut(s) 629, 641, 737, 1061
BmeT110I CYCGRG 1 cut(s) 995
BmgT120I GGNCC 1 cut(s) 483
BmiI GGNNCC 4 cut(s) 193, 610, 1223, 1295
BmrFI CCNGG 4 cut(s) 629, 641, 737, 1061
BmsI GCATC 8 cut(s) 28, 48, 108, 342, 593, 762, 976, 1132
BpiI GAAGAC 1 cut(s) 221
BplI GAGNNNNNCTC 2 cut(s) 608, 640
BpmI CTGGAG 3 cut(s) 423, 1217, 1280
Bpu10I CCTNAGC 1 cut(s) 666
Bpu1102I GCTNAGC 2 cut(s) 255, 933
BpuEI CTTGAG 2 cut(s) 293, 496
BpuMI CCSGG 1 cut(s) 629
BsaBI GATNNNNATC 1 cut(s) 618
BsaJI CCNNGG 5 cut(s) 62, 141, 627, 640, 711
BsaXI ACNNNNNCTCC 1 cut(s) 1310
Bsc4I CCNNNNNNNGG 6 cut(s) 48, 997, 1081, 1145, 1263, 1286
Bse1I ACTGG 1 cut(s) 223
Bse3DI GCAATG 1 cut(s) 610
Bse8I GATNNNNATC 1 cut(s) 618
BseBI CCWGG 3 cut(s) 641, 737, 1061
BseDI CCNNGG 5 cut(s) 62, 141, 627, 640, 711
BseGI GGATG 4 cut(s) 72, 679, 927, 991
BseJI GATNNNNATC 1 cut(s) 618
BseLI CCNNNNNNNGG 6 cut(s) 48, 997, 1081, 1145, 1263, 1286
BseMI GCAATG 1 cut(s) 610
BseMII CTCAG 4 cut(s) 657, 828, 947, 1103
BseNI ACTGG 1 cut(s) 223
BseRI GAGGAG 4 cut(s) 493, 539, 683, 1214
BseSI GKGCMC 1 cut(s) 956
BseXI GCAGC 7 cut(s) 358, 563, 649, 706, 941, 1051, 1079
BseYI CCCAGC 1 cut(s) 1238
BsgI GTGCAG 1 cut(s) 317
BshFI GGCC 3 cut(s) 140, 485, 515
BshNI GGYRCC 1 cut(s) 1221
BsiHKAI GWGCWC 2 cut(s) 244, 1256
BsiHKCI CYCGRG 1 cut(s) 995
BsiSI CCGG 1 cut(s) 629
BslFI GGGAC 2 cut(s) 419, 692
BslI CCNNNNNNNGG 6 cut(s) 48, 997, 1081, 1145, 1263, 1286
BsmAI GTCTC 2 cut(s) 816, 833
BsmFI GGGAC 2 cut(s) 419, 692
BsmI GAATGC 1 cut(s) 1276
BsnI GGCC 3 cut(s) 140, 485, 515
BsoBI CYCGRG 1 cut(s) 995
Bsp1286I GDGCHC 4 cut(s) 196, 244, 956, 1256
Bsp143I GATC 5 cut(s) 69, 619, 817, 897, 1085
Bsp1720I GCTNAGC 2 cut(s) 255, 933
BspACI CCGC 4 cut(s) 252, 312, 455, 516
BspANI GGCC 3 cut(s) 140, 485, 515
BspCNI CTCAG 4 cut(s) 658, 829, 946, 1102
BspHI TCATGA 1 cut(s) 244
BspLI GGNNCC 4 cut(s) 193, 610, 1223, 1295
BspMAI CTGCAG 2 cut(s) 931, 1069
BspMI ACCTGC 1 cut(s) 160
BspPI GGATC 2 cut(s) 627, 1093
BspQI GCTCTTC 1 cut(s) 1238
BspT107I GGYRCC 1 cut(s) 1221
BspTI CTTAAG 3 cut(s) 428, 500, 539
BsrDI GCAATG 1 cut(s) 610
BsrI ACTGG 1 cut(s) 223
BssECI CCNNGG 5 cut(s) 62, 141, 627, 640, 711
BssMI GATC 5 cut(s) 69, 619, 817, 897, 1085
BssT1I CCWWGG 2 cut(s) 62, 141
Bst2UI CCWGG 3 cut(s) 641, 737, 1061
Bst4CI ACNGT 3 cut(s) 32, 1096, 1176
Bst6I CTCTTC 3 cut(s) 783, 1238, 1317
BstAFI CTTAAG 3 cut(s) 428, 500, 539
BstC8I GCNNGC 2 cut(s) 261, 1107
BstDEI CTNAG 9 cut(s) 75, 255, 666, 723, 837, 933, 1032, 1044, 1089
BstDSI CCRYGG 1 cut(s) 711
BstENI CCTNNNNNAGG 2 cut(s) 46, 995
BstF5I GGATG 4 cut(s) 72, 679, 927, 991
BstH2I RGCGCY 1 cut(s) 1305
BstHHI GCGC 1 cut(s) 1304
BstKTI GATC 5 cut(s) 72, 622, 820, 900, 1088
BstMAI GTCTC 2 cut(s) 816, 833
BstMBI GATC 5 cut(s) 69, 619, 817, 897, 1085
BstMWI GCNNNNNNNGC 5 cut(s) 152, 260, 309, 535, 758
BstNI CCWGG 3 cut(s) 641, 737, 1061
BstNSI RCATGY 1 cut(s) 378
BstSCI CCNGG 4 cut(s) 627, 639, 735, 1059
BstSFI CTRYAG 3 cut(s) 46, 927, 1065
BstSLI GKGCMC 1 cut(s) 956
BstV1I GCAGC 7 cut(s) 358, 563, 649, 706, 941, 1051, 1079
BstV2I GAAGAC 1 cut(s) 221
BstX2I RGATCY 1 cut(s) 1085
BstXI CCANNNNNNTGG 1 cut(s) 236
BstYI RGATCY 1 cut(s) 1085
BsuRI GGCC 3 cut(s) 140, 485, 515
BtgI CCRYGG 1 cut(s) 711
BtsCI GGATG 4 cut(s) 72, 679, 927, 991
BtsI GCAGTG 1 cut(s) 305
BtsIMutI CAGTG 2 cut(s) 305, 1129
BveI ACCTGC 1 cut(s) 160
Cac8I GCNNGC 2 cut(s) 261, 1107
CciI TCATGA 1 cut(s) 244
CfoI GCGC 1 cut(s) 1304
Cfr13I GGNCC 1 cut(s) 483
CseI GACGC 1 cut(s) 355
Csp6I GTAC 2 cut(s) 1180, 1222
CviAII CATG 4 cut(s) 121, 230, 245, 375
CviQI GTAC 2 cut(s) 1180, 1222
DdeI CTNAG 9 cut(s) 75, 255, 666, 723, 837, 933, 1032, 1044, 1089
DpnI GATC 5 cut(s) 71, 621, 819, 899, 1087
DpnII GATC 5 cut(s) 69, 619, 817, 897, 1085
DrdI GACNNNNNNGTC 1 cut(s) 686
DseDI GACNNNNNNGTC 1 cut(s) 686
Eam1104I CTCTTC 3 cut(s) 783, 1238, 1317
EarI CTCTTC 3 cut(s) 783, 1238, 1317
Ecl136II GAGCTC 1 cut(s) 1254
Eco130I CCWWGG 2 cut(s) 62, 141
Eco147I AGGCCT 1 cut(s) 140
Eco24I GRGCYC 2 cut(s) 196, 1256
Eco53kI GAGCTC 1 cut(s) 1254
Eco88I CYCGRG 1 cut(s) 995
EcoICRI GAGCTC 1 cut(s) 1254
EcoNI CCTNNNNNAGG 2 cut(s) 46, 995
EcoRII CCWGG 3 cut(s) 639, 735, 1059
EcoT14I CCWWGG 2 cut(s) 62, 141
EcoT38I GRGCYC 2 cut(s) 196, 1256
ErhI CCWWGG 2 cut(s) 62, 141
FaeI CATG 4 cut(s) 124, 233, 248, 378
FalI AAGNNNNNCTT 4 cut(s) 458, 490, 483, 515
FaqI GGGAC 2 cut(s) 419, 692
FatI CATG 4 cut(s) 120, 229, 244, 374
FbaI TGATCA 1 cut(s) 69
Fnu4HI GCNGC 9 cut(s) 372, 456, 516, 552, 663, 720, 930, 1065, 1068
FokI GGATG 4 cut(s) 79, 686, 934, 998
FriOI GRGCYC 2 cut(s) 196, 1256
Fsp4HI GCNGC 9 cut(s) 372, 456, 516, 552, 663, 720, 930, 1065, 1068
FspBI CTAG 1 cut(s) 147
GlaI GCGC 1 cut(s) 1303
GluI GCNGC 9 cut(s) 372, 456, 516, 552, 663, 720, 930, 1065, 1068
GsaI CCCAGC 1 cut(s) 1242
GsuI CTGGAG 3 cut(s) 423, 1217, 1280
HaeII RGCGCY 1 cut(s) 1305
HaeIII GGCC 3 cut(s) 140, 485, 515
HapII CCGG 1 cut(s) 629
HgaI GACGC 1 cut(s) 355
HhaI GCGC 1 cut(s) 1304
Hin1II CATG 4 cut(s) 124, 233, 248, 378
Hin6I GCGC 1 cut(s) 1302
HinP1I GCGC 1 cut(s) 1302
HincII GTYRAC 2 cut(s) 118, 1189
HindII GTYRAC 2 cut(s) 118, 1189
HindIII AAGCTT 2 cut(s) 257, 536
HinfI GANTC 4 cut(s) 433, 732, 1115, 1307
HpaI GTTAAC 1 cut(s) 118
HpaII CCGG 1 cut(s) 629
HphI GGTGA 2 cut(s) 781, 792
Hpy166II GTNNAC 2 cut(s) 118, 1189
Hpy188I TCNGA 6 cut(s) 363, 391, 613, 855, 1092, 1312
Hpy8I GTNNAC 2 cut(s) 118, 1189
HpyAV CCTTC 9 cut(s) 52, 77, 445, 500, 538, 556, 1004, 1072, 1123
HpyCH4III ACNGT 3 cut(s) 32, 1096, 1176
HpyCH4V TGCA 7 cut(s) 134, 298, 374, 913, 929, 1067, 1105
HpyF10VI GCNNNNNNNGC 5 cut(s) 152, 260, 309, 535, 758
HpyF3I CTNAG 9 cut(s) 75, 255, 666, 723, 837, 933, 1032, 1044, 1089
Hsp92II CATG 4 cut(s) 124, 233, 248, 378
HspAI GCGC 1 cut(s) 1302
KpnI GGTACC 1 cut(s) 1225
Ksp22I TGATCA 1 cut(s) 69
KspAI GTTAAC 1 cut(s) 118
Kzo9I GATC 5 cut(s) 69, 619, 817, 897, 1085
LguI GCTCTTC 1 cut(s) 1238
LmnI GCTCC 7 cut(s) 191, 526, 629, 739, 860, 1259, 1299
Lsp1109I GCAGC 7 cut(s) 358, 563, 649, 706, 941, 1051, 1079
LweI GCATC 8 cut(s) 28, 48, 108, 342, 593, 762, 976, 1132
MaeI CTAG 1 cut(s) 147
MaeIII GTNAC 2 cut(s) 754, 798
MalI GATC 5 cut(s) 71, 621, 819, 899, 1087
MboI GATC 5 cut(s) 69, 619, 817, 897, 1085
MboII GAAGA 9 cut(s) 226, 460, 571, 607, 800, 841, 1060, 1255, 1279
MflI RGATCY 1 cut(s) 1085
MhlI GDGCHC 4 cut(s) 196, 244, 956, 1256
MluCI AATT 2 cut(s) 203, 330
MlyI GAGTC 2 cut(s) 1124, 1316
MseI TTAA 6 cut(s) 117, 429, 501, 540, 891, 939
MslI CAYNNNNRTG 2 cut(s) 234, 710
MspA1I CMGCKG 1 cut(s) 518
MspCI CTTAAG 3 cut(s) 428, 500, 539
MspI CCGG 1 cut(s) 629
MspR9I CCNGG 4 cut(s) 629, 641, 737, 1061
Mva1269I GAATGC 1 cut(s) 1276
MvaI CCWGG 3 cut(s) 641, 737, 1061
MwoI GCNNNNNNNGC 5 cut(s) 152, 260, 309, 535, 758
NciI CCSGG 1 cut(s) 629
NdeII GATC 5 cut(s) 69, 619, 817, 897, 1085
NlaIII CATG 4 cut(s) 124, 233, 248, 378
NlaIV GGNNCC 4 cut(s) 193, 610, 1223, 1295
NmuCI GTSAC 1 cut(s) 798
NspI RCATGY 1 cut(s) 378
OliI CACNNNNGTG 1 cut(s) 710
PaeR7I CTCGAG 1 cut(s) 995
PagI TCATGA 1 cut(s) 244
PceI AGGCCT 1 cut(s) 140
PciSI GCTCTTC 1 cut(s) 1238
PcsI WCGNNNNNNNCGW 1 cut(s) 687
PctI GAATGC 1 cut(s) 1276
PfeI GAWTC 2 cut(s) 433, 732
PfoI TCCNGGA 1 cut(s) 735
PkrI GCNGC 9 cut(s) 373, 457, 517, 553, 664, 721, 931, 1066, 1069
PleI GAGTC 2 cut(s) 1123, 1315
PpsI GAGTC 2 cut(s) 1123, 1315
PsiI TTATAA 1 cut(s) 338
Psp124BI GAGCTC 1 cut(s) 1256
Psp6I CCWGG 3 cut(s) 639, 735, 1059
PspFI CCCAGC 1 cut(s) 1238
PspGI CCWGG 3 cut(s) 639, 735, 1059
PspN4I GGNNCC 4 cut(s) 193, 610, 1223, 1295
PspPI GGNCC 1 cut(s) 483
PspXI VCTCGAGB 1 cut(s) 995
PstI CTGCAG 2 cut(s) 931, 1069
PsuI RGATCY 1 cut(s) 1085
RsaI GTAC 2 cut(s) 1181, 1223
RsaNI GTAC 2 cut(s) 1180, 1222
RseI CAYNNNNRTG 2 cut(s) 234, 710
SacI GAGCTC 1 cut(s) 1256
SapI GCTCTTC 1 cut(s) 1238
SaqAI TTAA 6 cut(s) 117, 429, 501, 540, 891, 939
SatI GCNGC 9 cut(s) 372, 456, 516, 552, 663, 720, 930, 1065, 1068
Sau3AI GATC 5 cut(s) 69, 619, 817, 897, 1085
Sau96I GGNCC 1 cut(s) 483
SchI GAGTC 2 cut(s) 1124, 1316
ScrFI CCNGG 4 cut(s) 629, 641, 737, 1061
SduI GDGCHC 4 cut(s) 196, 244, 956, 1256
SfaNI GCATC 8 cut(s) 28, 48, 108, 342, 593, 762, 976, 1132
SfcI CTRYAG 3 cut(s) 46, 927, 1065
Sfr274I CTCGAG 1 cut(s) 995
SlaI CTCGAG 1 cut(s) 995
SmiMI CAYNNNNRTG 2 cut(s) 234, 710
SmlI CTYRAG 6 cut(s) 272, 428, 475, 500, 539, 995
SmoI CTYRAG 6 cut(s) 272, 428, 475, 500, 539, 995
Sse9I AATT 2 cut(s) 203, 330
SseBI AGGCCT 1 cut(s) 140
SsiI CCGC 4 cut(s) 252, 312, 455, 516
SspMI CTAG 1 cut(s) 147
SstI GAGCTC 1 cut(s) 1256
StuI AGGCCT 1 cut(s) 140
StyD4I CCNGG 4 cut(s) 627, 639, 735, 1059
StyI CCWWGG 2 cut(s) 62, 141
TaaI ACNGT 3 cut(s) 32, 1096, 1176
TaqI TCGA 4 cut(s) 126, 690, 996, 1113
TasI AATT 2 cut(s) 203, 330
TauI GCSGC 2 cut(s) 458, 518
TfiI GAWTC 2 cut(s) 433, 732
Tru1I TTAA 6 cut(s) 117, 429, 501, 540, 891, 939
Tru9I TTAA 6 cut(s) 117, 429, 501, 540, 891, 939
TscAI CASTG 2 cut(s) 305, 1129
TseFI GTSAC 1 cut(s) 798
TseI GCWGC 7 cut(s) 371, 551, 662, 719, 929, 1064, 1067
Tsp45I GTSAC 1 cut(s) 798
TspDTI ATGAA 3 cut(s) 271, 1229, 1273
TspGWI ACGGA 3 cut(s) 700, 716, 873
TspRI CASTG 2 cut(s) 305, 1129
Vha464I CTTAAG 3 cut(s) 428, 500, 539
XagI CCTNNNNNAGG 2 cut(s) 46, 995
XapI RAATTY 1 cut(s) 203
XceI RCATGY 1 cut(s) 378
XhoI CTCGAG 1 cut(s) 995
XspI CTAG 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.