Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009418

Physical Location & Seq

Genomic Coordinates Forward (+)

41840315 .. 41843685

Gene Structure 3371 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G506900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGGCTCTACAAAATATTGGTGCTTCAAACCGTGATGATGCCTTCTACAGGTATAAGATGCCACGGATGATTACTAAGATTGAAGGCAGAGGAAATGGCATCAAGACCAATGTGGTCAACATGGTTGATATTGCAAAGGCCTTGGCCAGACCTGCTTCTTATACTACTAAGTATTTTGGCTGTGAGCTTGGAGCTCAATCGAAATTTGATGAGAAGACTGGGACTTCCCATGTGAATGGTGCTCATGACACTGCGAAGCTTGCTGGACTTCTCGAGAACTTCATTAAGAAATATGTGCAATGCTATGGTTGTGGGAATCCTGAAACTGAAATAATTATCACTAAGACACAGATGCTCAATCTCAAATGTGCTGCATGTGGTTTTGTGTCTGATGTTGATATGAGGGACAAGCTTACAACTTTTATCCTCAAGAACCCTCCAGAGCAGAAGAAGACAGCTAAAGAAAAGAAAGCCTTGAGGAGGGCTGACAAAGAGCAGCTTAAGGAAGGGGAAGCTGCTGATGAGGAGCAAAAGAAGCTTAAGAAGGAGGCGGCAAAGAAGAAGGCAACAACTGGTTCTAAAGCATCAAGCAAGAAGAAACCCTCTGGTTCTGATGAGGATCGCTCCCCCACCCACAGCCAGGGAGATGAGAATGACCAAGCTGCTGAAGATGACGATGATGATGTCCAGTGGCAGACAGACACTTCCTTGGAGGCTGCTCGGAAGCGAATCCAGGAGCAGTTGAGTGCGGTTACTGCTGATATGGTCATGCTTTCTACCACTGCAGAGGAGAATCCTGAGACCAGGACCCATCAGAATGGTGCTGATAAAAATACACATGGAAGGCTTGTTAATGAGATAAAACAATGCCTGCAAAAGGGGATTTCTGCTGCCCAGTTTAAATCCTTTTTGGTTACTCTTTCTGGTACGCCTCAAGAAATTATGGATGCCTTGCTTGAAGCTCTTTTCGAAGGCCTTGGAAAAGGGTTTTCTAAGGAGGTTTCTAAGAAGAAAAACTACCTGGCTGCAGCAACCCAGGTGGAGGGGTCCCAGATGGTTCTATTGCAAGCTATTGAGTCTTTCATTGGGAAGGCAAACCCTGATGCTGCAAAGGAAGTGGCTTTGGTCCTGAAATCACTGTATGACGTTGATGTGCTGGAAGAGGAATTCATTATGAAGTGGTACCAGCAGGGCTTAGGCGGCATGAACAAAAGCTCTTTGATCTGGAAGAATGCCAAGCCCTTCATCGAATGGCTCCAGAGTGCTGAGTCGGAGACAGAGGAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03013 ko04214 map03013 map04214

Pfam Domains

Protein Families

W2 eIF-5_eIF-2B

Protein Analysis

430

Amino Acids

47.46

Weight (kDa)

6.13

Isoelectric Point (pI)

33.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36730 AT1G77840
fragaria_vesca	FvH4_5g38780
malus_domestica	MD00G1104000.v1.1 MD09G1259500.v1.1 MD15G1359300.v1.1
prunus_persica	Prupe.1G506900_v2.0.a1 Prupe.3G151100_v2.0.a1
pyrus_communis	pycom08g14860 pycom09g17420 pycom15g32170
rosa_chinensis	RchiOBHm_Chr7g0240701
rosa_laevigata	RLG00000000625
rosa_multiflora	Rmu_sc0004799.1_g000002
rosa_roxburghii	Rroxscaffold_3G00219650
rosa_rugosa	Rorug07G0338400 Rorug07G0338400
rosa_samantha	Rh7AG493000 Rh7BG465000 Rh7CG511400 Rh7DG478200
rosa_wichuraiana	Rw7G041700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	160
Acc65I	GGTACC	1 cut(s)	1182
AccB1I	GGYRCC	1 cut(s)	1182
AciI	CCGC	3 cut(s)	551, 749, 1200
AclWI	GGATC	1 cut(s)	627
AcoI	YGGCCR	1 cut(s)	144
AcsI	RAATTY	2 cut(s)	203, 1166
AcuI	CTGAAG	1 cut(s)	687
AfaI	GTAC	2 cut(s)	928, 1184
AfiI	CCNNNNNNNGG	5 cut(s)	48, 480, 640, 877, 1042
AflII	CTTAAG	2 cut(s)	500, 539
AgsI	TTSAA	3 cut(s)	27, 83, 959
AjnI	CCWGG	5 cut(s)	639, 732, 803, 1020, 1035
Alw21I	GWGCWC	2 cut(s)	196, 244
Alw26I	GTCTC	2 cut(s)	794, 1268
AlwI	GGATC	1 cut(s)	627
Ama87I	CYCGRG	1 cut(s)	272
AoxI	GGCC	3 cut(s)	138, 144, 973
ApeKI	GCWGC	9 cut(s)	371, 496, 515, 662, 716, 890, 1025, 1028, 1106
ApoI	RAATTY	2 cut(s)	203, 1166
Asp718I	GGTACC	1 cut(s)	1182
AspS9I	GGNCC	3 cut(s)	807, 1047, 1126
AsuII	TTCGAA	1 cut(s)	969
AvaI	CYCGRG	1 cut(s)	272
AvaII	GGWCC	3 cut(s)	807, 1047, 1126
BalI	TGGCCA	1 cut(s)	146
BanI	GGYRCC	1 cut(s)	1182
BanII	GRGCYC	1 cut(s)	196
BarI	GAAGNNNNNNTAC	2 cut(s)	1001, 1033
BbsI	GAAGAC	2 cut(s)	221, 458
Bbv12I	GWGCWC	2 cut(s)	196, 244
BbvI	GCAGC	9 cut(s)	358, 502, 508, 649, 703, 877, 1012, 1040, 1093
BccI	CCATC	2 cut(s)	819, 1048
BciT130I	CCWGG	5 cut(s)	641, 734, 805, 1022, 1037
BcoDI	GTCTC	2 cut(s)	794, 1268
BfmI	CTRYAG	3 cut(s)	46, 783, 1026
BfrI	CTTAAG	2 cut(s)	500, 539
BfuAI	ACCTGC	1 cut(s)	160
Bme1390I	CCNGG	5 cut(s)	641, 734, 805, 1022, 1037
Bme18I	GGWCC	3 cut(s)	807, 1047, 1126
BmeT110I	CYCGRG	1 cut(s)	272
BmgT120I	GGNCC	3 cut(s)	807, 1047, 1126
BmiI	GGNNCC	5 cut(s)	809, 1048, 1049, 1184, 1256
BmrFI	CCNGG	5 cut(s)	641, 734, 805, 1022, 1037
BmrI	ACTGGG	2 cut(s)	228, 889
BmsI	GCATC	7 cut(s)	28, 48, 108, 342, 593, 937, 1093
BmuI	ACTGGG	2 cut(s)	228, 889
BpiI	GAAGAC	2 cut(s)	221, 458
BplI	GAGNNNNNCTC	2 cut(s)	608, 640
BpmI	CTGGAG	2 cut(s)	423, 1241
Bpu10I	CCTNAGC	1 cut(s)	1195
Bpu14I	TTCGAA	1 cut(s)	969
BpuEI	CTTGAG	3 cut(s)	413, 496, 918
BsaBI	GATNNNNATC	1 cut(s)	618
BsaI	GGTCTC	1 cut(s)	794
BsaJI	CCNNGG	6 cut(s)	62, 141, 640, 708, 976, 1035
Bsc4I	CCNNNNNNNGG	5 cut(s)	48, 480, 640, 877, 1042
Bse1I	ACTGG	4 cut(s)	223, 577, 688, 895
Bse3DI	GCAATG	1 cut(s)	305
Bse8I	GATNNNNATC	1 cut(s)	618
BseBI	CCWGG	5 cut(s)	641, 734, 805, 1022, 1037
BseDI	CCNNGG	6 cut(s)	62, 141, 640, 708, 976, 1035
BseGI	GGATG	2 cut(s)	72, 952
BseJI	GATNNNNATC	1 cut(s)	618
BseLI	CCNNNNNNNGG	5 cut(s)	48, 480, 640, 877, 1042
BseMI	GCAATG	1 cut(s)	305
BseMII	CTCAG	2 cut(s)	789, 1257
BseNI	ACTGG	4 cut(s)	223, 577, 688, 895
BseRI	GAGGAG	3 cut(s)	493, 539, 803
BseXI	GCAGC	9 cut(s)	358, 502, 508, 649, 703, 877, 1012, 1040, 1093
BshFI	GGCC	3 cut(s)	140, 146, 975
BshNI	GGYRCC	1 cut(s)	1182
BsiHKAI	GWGCWC	2 cut(s)	196, 244
BsiHKCI	CYCGRG	1 cut(s)	272
BslFI	GGGAC	3 cut(s)	235, 419, 1033
BslI	CCNNNNNNNGG	5 cut(s)	48, 480, 640, 877, 1042
BsmAI	GTCTC	2 cut(s)	794, 1268
BsmFI	GGGAC	3 cut(s)	235, 419, 1033
BsmI	GAATGC	1 cut(s)	1237
BsnI	GGCC	3 cut(s)	140, 146, 975
Bso31I	GGTCTC	1 cut(s)	794
BsoBI	CYCGRG	1 cut(s)	272
Bsp119I	TTCGAA	1 cut(s)	969
Bsp1286I	GDGCHC	2 cut(s)	196, 244
Bsp143I	GATC	2 cut(s)	619, 1221
BspACI	CCGC	3 cut(s)	551, 749, 1200
BspANI	GGCC	3 cut(s)	140, 146, 975
BspCNI	CTCAG	2 cut(s)	790, 1258
BspHI	TCATGA	1 cut(s)	244
BspLI	GGNNCC	5 cut(s)	809, 1048, 1049, 1184, 1256
BspMAI	CTGCAG	2 cut(s)	787, 1030
BspMI	ACCTGC	1 cut(s)	160
BspPI	GGATC	1 cut(s)	627
BspT104I	TTCGAA	1 cut(s)	969
BspT107I	GGYRCC	1 cut(s)	1182
BspTI	CTTAAG	2 cut(s)	500, 539
BspTNI	GGTCTC	1 cut(s)	794
BsrDI	GCAATG	1 cut(s)	305
BsrI	ACTGG	4 cut(s)	223, 577, 688, 895
BssECI	CCNNGG	6 cut(s)	62, 141, 640, 708, 976, 1035
BssMI	GATC	2 cut(s)	619, 1221
BssT1I	CCWWGG	3 cut(s)	141, 708, 976
Bst2UI	CCWGG	5 cut(s)	641, 734, 805, 1022, 1037
Bst4CI	ACNGT	2 cut(s)	32, 1140
Bst6I	CTCTTC	2 cut(s)	1155, 1278
BstAFI	CTTAAG	2 cut(s)	500, 539
BstBI	TTCGAA	1 cut(s)	969
BstC8I	GCNNGC	3 cut(s)	261, 872, 1068
BstDEI	CTNAG	8 cut(s)	75, 168, 342, 798, 993, 1005, 1195, 1266
BstDSI	CCRYGG	1 cut(s)	62
BstENI	CCTNNNNNAGG	3 cut(s)	46, 478, 875
BstF5I	GGATG	2 cut(s)	72, 952
BstKTI	GATC	2 cut(s)	622, 1224
BstMAI	GTCTC	2 cut(s)	794, 1268
BstMBI	GATC	2 cut(s)	619, 1221
BstMWI	GCNNNNNNNGC	5 cut(s)	152, 260, 535, 755, 1200
BstNI	CCWGG	5 cut(s)	641, 734, 805, 1022, 1037
BstNSI	RCATGY	1 cut(s)	378
BstSCI	CCNGG	5 cut(s)	639, 732, 803, 1020, 1035
BstSFI	CTRYAG	3 cut(s)	46, 783, 1026
BstV1I	GCAGC	9 cut(s)	358, 502, 508, 649, 703, 877, 1012, 1040, 1093
BstV2I	GAAGAC	2 cut(s)	221, 458
BstXI	CCANNNNNNTGG	2 cut(s)	236, 818
BsuRI	GGCC	3 cut(s)	140, 146, 975
BtgI	CCRYGG	1 cut(s)	62
BtsCI	GGATG	2 cut(s)	72, 952
BtsI	GCAGTG	2 cut(s)	249, 780
BtsIMutI	CAGTG	4 cut(s)	249, 695, 780, 1136
BveI	ACCTGC	1 cut(s)	160
Cac8I	GCNNGC	3 cut(s)	261, 872, 1068
CciI	TCATGA	1 cut(s)	244
Cfr13I	GGNCC	3 cut(s)	807, 1047, 1126
Csp6I	GTAC	2 cut(s)	927, 1183
CspCI	CAANNNNNGTGG	4 cut(s)	1020, 1055, 1098, 1133
CviAII	CATG	7 cut(s)	121, 230, 245, 375, 769, 839, 1204
CviQI	GTAC	2 cut(s)	927, 1183
DdeI	CTNAG	8 cut(s)	75, 168, 342, 798, 993, 1005, 1195, 1266
DpnI	GATC	2 cut(s)	621, 1223
DpnII	GATC	2 cut(s)	619, 1221
DraI	TTTAAA	1 cut(s)	901
EaeI	YGGCCR	1 cut(s)	144
Eam1104I	CTCTTC	2 cut(s)	1155, 1278
EarI	CTCTTC	2 cut(s)	1155, 1278
Ecl136II	GAGCTC	1 cut(s)	194
Eco130I	CCWWGG	3 cut(s)	141, 708, 976
Eco147I	AGGCCT	2 cut(s)	140, 975
Eco24I	GRGCYC	1 cut(s)	196
Eco31I	GGTCTC	1 cut(s)	794
Eco47I	GGWCC	3 cut(s)	807, 1047, 1126
Eco53kI	GAGCTC	1 cut(s)	194
Eco57I	CTGAAG	1 cut(s)	687
Eco88I	CYCGRG	1 cut(s)	272
EcoICRI	GAGCTC	1 cut(s)	194
EcoNI	CCTNNNNNAGG	3 cut(s)	46, 478, 875
EcoO109I	RGGNCCY	2 cut(s)	807, 1047
EcoRI	GAATTC	1 cut(s)	1166
EcoRII	CCWGG	5 cut(s)	639, 732, 803, 1020, 1035
EcoT14I	CCWWGG	3 cut(s)	141, 708, 976
EcoT38I	GRGCYC	1 cut(s)	196
ErhI	CCWWGG	3 cut(s)	141, 708, 976
FaeI	CATG	7 cut(s)	124, 233, 248, 378, 772, 842, 1207
FalI	AAGNNNNNCTT	4 cut(s)	458, 490, 483, 515
FaqI	GGGAC	3 cut(s)	235, 419, 1033
FatI	CATG	7 cut(s)	120, 229, 244, 374, 768, 838, 1203
FokI	GGATG	2 cut(s)	79, 959
FriOI	GRGCYC	1 cut(s)	196
GsuI	CTGGAG	2 cut(s)	423, 1241
HaeIII	GGCC	3 cut(s)	140, 146, 975
Hin1II	CATG	7 cut(s)	124, 233, 248, 378, 772, 842, 1207
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HindIII	AAGCTT	3 cut(s)	257, 410, 536
HinfI	GANTC	5 cut(s)	316, 729, 793, 1076, 1268
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188I	TCNGA	5 cut(s)	391, 613, 723, 816, 1273
Hpy8I	GTNNAC	1 cut(s)	118
HpyAV	CCTTC	9 cut(s)	52, 77, 500, 538, 556, 837, 965, 1084, 1252
HpyCH4III	ACNGT	2 cut(s)	32, 1140
HpyCH4IV	ACGT	1 cut(s)	1146
HpyCH4V	TGCA	8 cut(s)	134, 298, 374, 785, 874, 1028, 1066, 1109
HpyF10VI	GCNNNNNNNGC	5 cut(s)	152, 260, 535, 755, 1200
HpyF3I	CTNAG	8 cut(s)	75, 168, 342, 798, 993, 1005, 1195, 1266
HpySE526I	ACGT	1 cut(s)	1146
Hsp92II	CATG	7 cut(s)	124, 233, 248, 378, 772, 842, 1207
KflI	GGGWCCC	1 cut(s)	1047
KpnI	GGTACC	1 cut(s)	1186
Kzo9I	GATC	2 cut(s)	619, 1221
LmnI	GCTCC	5 cut(s)	191, 526, 629, 736, 1260
Lsp1109I	GCAGC	9 cut(s)	358, 502, 508, 649, 703, 877, 1012, 1040, 1093
LweI	GCATC	7 cut(s)	28, 48, 108, 342, 593, 937, 1093
MaeII	ACGT	1 cut(s)	1146
MaeIII	GTNAC	2 cut(s)	751, 913
MalI	GATC	2 cut(s)	621, 1223
MboI	GATC	2 cut(s)	619, 1221
MboII	GAAGA	9 cut(s)	226, 460, 463, 571, 607, 680, 1021, 1172, 1240
MhlI	GDGCHC	2 cut(s)	196, 244
MlsI	TGGCCA	1 cut(s)	146
MluCI	AATT	4 cut(s)	203, 333, 939, 1166
MluNI	TGGCCA	1 cut(s)	146
MlyI	GAGTC	2 cut(s)	1085, 1277
MmeI	TCCRAC	1 cut(s)	1251
Mox20I	TGGCCA	1 cut(s)	146
MscI	TGGCCA	1 cut(s)	146
MseI	TTAA	5 cut(s)	285, 501, 540, 852, 900
MslI	CAYNNNNRTG	2 cut(s)	234, 816
Msp20I	TGGCCA	1 cut(s)	146
MspCI	CTTAAG	2 cut(s)	500, 539
MspR9I	CCNGG	5 cut(s)	641, 734, 805, 1022, 1037
Mva1269I	GAATGC	1 cut(s)	1237
MvaI	CCWGG	5 cut(s)	641, 734, 805, 1022, 1037
MwoI	GCNNNNNNNGC	5 cut(s)	152, 260, 535, 755, 1200
NdeII	GATC	2 cut(s)	619, 1221
NlaIII	CATG	7 cut(s)	124, 233, 248, 378, 772, 842, 1207
NlaIV	GGNNCC	5 cut(s)	809, 1048, 1049, 1184, 1256
NspI	RCATGY	1 cut(s)	378
NspV	TTCGAA	1 cut(s)	969
PaeR7I	CTCGAG	1 cut(s)	272
PagI	TCATGA	1 cut(s)	244
PceI	AGGCCT	2 cut(s)	140, 975
PctI	GAATGC	1 cut(s)	1237
PfeI	GAWTC	3 cut(s)	316, 729, 793
PfoI	TCCNGGA	1 cut(s)	732
PleI	GAGTC	2 cut(s)	1084, 1276
PpsI	GAGTC	2 cut(s)	1084, 1276
PpuMI	RGGWCCY	2 cut(s)	807, 1047
Psp124BI	GAGCTC	1 cut(s)	196
Psp5II	RGGWCCY	2 cut(s)	807, 1047
Psp6I	CCWGG	5 cut(s)	639, 732, 803, 1020, 1035
PspGI	CCWGG	5 cut(s)	639, 732, 803, 1020, 1035
PspN4I	GGNNCC	5 cut(s)	809, 1048, 1049, 1184, 1256
PspPI	GGNCC	3 cut(s)	807, 1047, 1126
PspPPI	RGGWCCY	2 cut(s)	807, 1047
PstI	CTGCAG	2 cut(s)	787, 1030
RsaI	GTAC	2 cut(s)	928, 1184
RsaNI	GTAC	2 cut(s)	927, 1183
RseI	CAYNNNNRTG	2 cut(s)	234, 816
SacI	GAGCTC	1 cut(s)	196
SaqAI	TTAA	5 cut(s)	285, 501, 540, 852, 900
Sau3AI	GATC	2 cut(s)	619, 1221
Sau96I	GGNCC	3 cut(s)	807, 1047, 1126
SchI	GAGTC	2 cut(s)	1085, 1277
ScrFI	CCNGG	5 cut(s)	641, 734, 805, 1022, 1037
SduI	GDGCHC	2 cut(s)	196, 244
SfaNI	GCATC	7 cut(s)	28, 48, 108, 342, 593, 937, 1093
SfcI	CTRYAG	3 cut(s)	46, 783, 1026
Sfr274I	CTCGAG	1 cut(s)	272
SfuI	TTCGAA	1 cut(s)	969
SinI	GGWCC	3 cut(s)	807, 1047, 1126
SlaI	CTCGAG	1 cut(s)	272
SmiMI	CAYNNNNRTG	2 cut(s)	234, 816
SmlI	CTYRAG	6 cut(s)	272, 428, 475, 500, 539, 933
SmoI	CTYRAG	6 cut(s)	272, 428, 475, 500, 539, 933
Sse9I	AATT	4 cut(s)	203, 333, 939, 1166
SseBI	AGGCCT	2 cut(s)	140, 975
SsiI	CCGC	3 cut(s)	551, 749, 1200
SspI	AATATT	1 cut(s)	16
SstI	GAGCTC	1 cut(s)	196
StuI	AGGCCT	2 cut(s)	140, 975
StyD4I	CCNGG	5 cut(s)	639, 732, 803, 1020, 1035
StyI	CCWWGG	3 cut(s)	141, 708, 976
TaaI	ACNGT	2 cut(s)	32, 1140
TaiI	ACGT	1 cut(s)	1149
TaqI	TCGA	4 cut(s)	200, 273, 969, 1248
TasI	AATT	4 cut(s)	203, 333, 939, 1166
TauI	GCSGC	2 cut(s)	554, 1203
TfiI	GAWTC	3 cut(s)	316, 729, 793
Tru1I	TTAA	5 cut(s)	285, 501, 540, 852, 900
Tru9I	TTAA	5 cut(s)	285, 501, 540, 852, 900
TscAI	CASTG	4 cut(s)	256, 695, 787, 1143
TseI	GCWGC	9 cut(s)	371, 496, 515, 662, 716, 890, 1025, 1028, 1106
TspDTI	ATGAA	6 cut(s)	271, 1072, 1159, 1190, 1220, 1234
TspGWI	ACGGA	1 cut(s)	79
TspRI	CASTG	4 cut(s)	256, 695, 787, 1143
Vha464I	CTTAAG	2 cut(s)	500, 539
VpaK11BI	GGWCC	3 cut(s)	807, 1047, 1126
XagI	CCTNNNNNAGG	3 cut(s)	46, 478, 875
XapI	RAATTY	2 cut(s)	203, 1166
XceI	RCATGY	1 cut(s)	378
XhoI	CTCGAG	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.